Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS08195

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS08185 and LRK55_RS08190 are separated by 97 nucleotidesLRK55_RS08190 and LRK55_RS08195 are separated by 123 nucleotidesLRK55_RS08195 and LRK55_RS08200 are separated by 88 nucleotidesLRK55_RS08200 and LRK55_RS08205 are separated by 84 nucleotides LRK55_RS08185: LRK55_RS08185 - acetate--CoA ligase, at 1,789,970 to 1,791,910 _RS08185 LRK55_RS08190: LRK55_RS08190 - response regulator transcription factor, at 1,792,008 to 1,792,682 _RS08190 LRK55_RS08195: LRK55_RS08195 - PAS domain-containing hybrid sensor histidine kinase/response regulator, at 1,792,806 to 1,796,294 _RS08195 LRK55_RS08200: LRK55_RS08200 - 4'-phosphopantetheinyl transferase superfamily protein, at 1,796,383 to 1,797,027 _RS08200 LRK55_RS08205: LRK55_RS08205 - pyridoxine 5'-phosphate synthase, at 1,797,112 to 1,797,855 _RS08205 Position (kb) 1792 1793 1794 1795 1796 1797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1792.101 kb on - strand, within LRK55_RS08190at 1792.159 kb on + strand, within LRK55_RS08190at 1792.159 kb on + strand, within LRK55_RS08190at 1792.160 kb on - strand, within LRK55_RS08190at 1792.160 kb on - strand, within LRK55_RS08190at 1792.160 kb on - strand, within LRK55_RS08190at 1792.160 kb on - strand, within LRK55_RS08190at 1792.197 kb on + strand, within LRK55_RS08190at 1792.198 kb on - strand, within LRK55_RS08190at 1792.198 kb on - strand, within LRK55_RS08190at 1792.227 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.311 kb on + strand, within LRK55_RS08190at 1792.312 kb on - strand, within LRK55_RS08190at 1792.312 kb on - strand, within LRK55_RS08190at 1792.312 kb on - strand, within LRK55_RS08190at 1792.312 kb on - strand, within LRK55_RS08190at 1792.843 kb on - strandat 1792.843 kb on - strandat 1792.843 kb on - strandat 1793.038 kb on + strandat 1793.039 kb on - strandat 1793.039 kb on - strandat 1793.039 kb on - strandat 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.463 kb on + strand, within LRK55_RS08195at 1793.464 kb on - strand, within LRK55_RS08195at 1793.464 kb on - strand, within LRK55_RS08195at 1793.464 kb on - strand, within LRK55_RS08195at 1793.511 kb on + strand, within LRK55_RS08195at 1793.511 kb on + strand, within LRK55_RS08195at 1793.511 kb on + strand, within LRK55_RS08195at 1793.512 kb on - strand, within LRK55_RS08195at 1793.512 kb on - strand, within LRK55_RS08195at 1793.512 kb on - strand, within LRK55_RS08195at 1793.512 kb on - strand, within LRK55_RS08195at 1793.530 kb on + strand, within LRK55_RS08195at 1793.530 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.713 kb on + strand, within LRK55_RS08195at 1793.714 kb on - strand, within LRK55_RS08195at 1793.714 kb on - strand, within LRK55_RS08195at 1794.052 kb on + strand, within LRK55_RS08195at 1794.052 kb on + strand, within LRK55_RS08195at 1794.053 kb on - strand, within LRK55_RS08195at 1794.069 kb on - strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.070 kb on + strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.071 kb on - strand, within LRK55_RS08195at 1794.082 kb on + strand, within LRK55_RS08195at 1794.083 kb on - strand, within LRK55_RS08195at 1794.175 kb on + strand, within LRK55_RS08195at 1794.175 kb on + strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.176 kb on - strand, within LRK55_RS08195at 1794.310 kb on + strand, within LRK55_RS08195at 1794.310 kb on + strand, within LRK55_RS08195at 1794.541 kb on + strand, within LRK55_RS08195at 1794.541 kb on + strand, within LRK55_RS08195at 1794.541 kb on + strand, within LRK55_RS08195at 1794.541 kb on + strand, within LRK55_RS08195at 1794.541 kb on + strand, within LRK55_RS08195at 1794.542 kb on - strand, within LRK55_RS08195at 1794.542 kb on - strand, within LRK55_RS08195at 1794.542 kb on - strand, within LRK55_RS08195at 1794.542 kb on - strand, within LRK55_RS08195at 1794.604 kb on + strand, within LRK55_RS08195at 1794.604 kb on + strand, within LRK55_RS08195at 1794.605 kb on - strand, within LRK55_RS08195at 1794.605 kb on - strand, within LRK55_RS08195at 1794.952 kb on + strand, within LRK55_RS08195at 1794.952 kb on + strand, within LRK55_RS08195at 1794.952 kb on + strand, within LRK55_RS08195at 1794.952 kb on + strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1794.953 kb on - strand, within LRK55_RS08195at 1795.018 kb on + strand, within LRK55_RS08195at 1795.019 kb on - strand, within LRK55_RS08195at 1795.019 kb on - strand, within LRK55_RS08195at 1795.115 kb on - strand, within LRK55_RS08195at 1795.117 kb on + strand, within LRK55_RS08195at 1795.118 kb on - strand, within LRK55_RS08195at 1795.123 kb on + strand, within LRK55_RS08195at 1795.123 kb on + strand, within LRK55_RS08195at 1795.123 kb on + strand, within LRK55_RS08195at 1795.123 kb on + strand, within LRK55_RS08195at 1795.123 kb on + strand, within LRK55_RS08195at 1795.124 kb on - strand, within LRK55_RS08195at 1795.124 kb on - strand, within LRK55_RS08195at 1795.124 kb on - strand, within LRK55_RS08195at 1795.459 kb on + strand, within LRK55_RS08195at 1795.459 kb on + strand, within LRK55_RS08195at 1795.459 kb on + strand, within LRK55_RS08195at 1795.459 kb on + strand, within LRK55_RS08195at 1795.460 kb on - strand, within LRK55_RS08195at 1795.867 kb on + strand, within LRK55_RS08195at 1795.867 kb on + strand, within LRK55_RS08195at 1795.867 kb on + strand, within LRK55_RS08195at 1795.867 kb on + strand, within LRK55_RS08195at 1795.868 kb on - strand, within LRK55_RS08195at 1795.868 kb on - strand, within LRK55_RS08195at 1795.868 kb on - strand, within LRK55_RS08195at 1795.903 kb on + strand, within LRK55_RS08195at 1795.903 kb on + strand, within LRK55_RS08195at 1795.903 kb on + strand, within LRK55_RS08195at 1795.903 kb on + strand, within LRK55_RS08195at 1795.903 kb on + strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1795.904 kb on - strand, within LRK55_RS08195at 1796.077 kb on + strandat 1796.077 kb on + strandat 1796.077 kb on + strandat 1796.077 kb on + strandat 1796.078 kb on - strandat 1796.078 kb on - strandat 1796.078 kb on - strandat 1796.078 kb on - strandat 1796.078 kb on - strandat 1796.078 kb on - strandat 1796.090 kb on - strandat 1796.129 kb on - strandat 1796.129 kb on - strandat 1796.149 kb on + strandat 1796.149 kb on + strandat 1796.149 kb on + strandat 1796.149 kb on + strandat 1796.150 kb on - strandat 1796.150 kb on - strandat 1796.150 kb on - strandat 1796.150 kb on - strandat 1796.170 kb on + strandat 1796.171 kb on - strandat 1796.171 kb on - strandat 1796.171 kb on - strandat 1796.171 kb on - strandat 1796.203 kb on + strandat 1796.203 kb on + strandat 1796.203 kb on + strandat 1796.204 kb on + strandat 1796.227 kb on + strandat 1796.227 kb on + strandat 1796.254 kb on + strandat 1796.254 kb on + strandat 1796.255 kb on - strandat 1796.255 kb on - strandat 1796.255 kb on - strandat 1796.255 kb on - strandat 1796.255 kb on - strandat 1796.255 kb on - strandat 1796.417 kb on + strandat 1796.417 kb on + strandat 1796.418 kb on - strandat 1796.418 kb on - strandat 1796.418 kb on - strandat 1796.418 kb on - strandat 1796.418 kb on - strandat 1796.418 kb on - strandat 1796.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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1,792,101 - LRK55_RS08190 0.14 +0.7
1,792,159 + LRK55_RS08190 0.22 +1.1
1,792,159 + LRK55_RS08190 0.22 -0.1
1,792,160 - LRK55_RS08190 0.23 +1.0
1,792,160 - LRK55_RS08190 0.23 +0.3
1,792,160 - LRK55_RS08190 0.23 +0.6
1,792,160 - LRK55_RS08190 0.23 +0.1
1,792,197 + LRK55_RS08190 0.28 +0.7
1,792,198 - LRK55_RS08190 0.28 -0.6
1,792,198 - LRK55_RS08190 0.28 -0.7
1,792,227 + LRK55_RS08190 0.32 +1.5
1,792,311 + LRK55_RS08190 0.45 +1.3
1,792,311 + LRK55_RS08190 0.45 -1.1
1,792,311 + LRK55_RS08190 0.45 +1.7
1,792,311 + LRK55_RS08190 0.45 -0.0
1,792,311 + LRK55_RS08190 0.45 +0.3
1,792,311 + LRK55_RS08190 0.45 -0.1
1,792,311 + LRK55_RS08190 0.45 +1.3
1,792,312 - LRK55_RS08190 0.45 -0.2
1,792,312 - LRK55_RS08190 0.45 -0.2
1,792,312 - LRK55_RS08190 0.45 -0.2
1,792,312 - LRK55_RS08190 0.45 -0.2
1,792,843 - +1.3
1,792,843 - -0.3
1,792,843 - +1.3
1,793,038 + -1.2
1,793,039 - -1.2
1,793,039 - +0.6
1,793,039 - -0.2
1,793,463 + LRK55_RS08195 0.19 +1.4
1,793,463 + LRK55_RS08195 0.19 +0.3
1,793,463 + LRK55_RS08195 0.19 -2.1
1,793,463 + LRK55_RS08195 0.19 +1.8
1,793,463 + LRK55_RS08195 0.19 +0.4
1,793,463 + LRK55_RS08195 0.19 -1.3
1,793,463 + LRK55_RS08195 0.19 +0.4
1,793,464 - LRK55_RS08195 0.19 -0.0
1,793,464 - LRK55_RS08195 0.19 -0.2
1,793,464 - LRK55_RS08195 0.19 -0.1
1,793,511 + LRK55_RS08195 0.20 +0.5
1,793,511 + LRK55_RS08195 0.20 +0.4
1,793,511 + LRK55_RS08195 0.20 -0.8
1,793,512 - LRK55_RS08195 0.20 +1.8
1,793,512 - LRK55_RS08195 0.20 +0.7
1,793,512 - LRK55_RS08195 0.20 +0.3
1,793,512 - LRK55_RS08195 0.20 +0.1
1,793,530 + LRK55_RS08195 0.21 -0.0
1,793,530 + LRK55_RS08195 0.21 -0.7
1,793,713 + LRK55_RS08195 0.26 -1.1
1,793,713 + LRK55_RS08195 0.26 -0.7
1,793,713 + LRK55_RS08195 0.26 +0.3
1,793,713 + LRK55_RS08195 0.26 +0.7
1,793,713 + LRK55_RS08195 0.26 +0.8
1,793,713 + LRK55_RS08195 0.26 -0.5
1,793,714 - LRK55_RS08195 0.26 -0.3
1,793,714 - LRK55_RS08195 0.26 -1.1
1,794,052 + LRK55_RS08195 0.36 +0.3
1,794,052 + LRK55_RS08195 0.36 +0.5
1,794,053 - LRK55_RS08195 0.36 -1.1
1,794,069 - LRK55_RS08195 0.36 +1.9
1,794,070 + LRK55_RS08195 0.36 -1.4
1,794,070 + LRK55_RS08195 0.36 +0.9
1,794,070 + LRK55_RS08195 0.36 -0.5
1,794,070 + LRK55_RS08195 0.36 -0.2
1,794,070 + LRK55_RS08195 0.36 +0.4
1,794,070 + LRK55_RS08195 0.36 +0.2
1,794,070 + LRK55_RS08195 0.36 +0.4
1,794,070 + LRK55_RS08195 0.36 +0.2
1,794,070 + LRK55_RS08195 0.36 +0.5
1,794,070 + LRK55_RS08195 0.36 +1.2
1,794,070 + LRK55_RS08195 0.36 +1.0
1,794,070 + LRK55_RS08195 0.36 +0.5
1,794,071 - LRK55_RS08195 0.36 +0.2
1,794,071 - LRK55_RS08195 0.36 +1.3
1,794,071 - LRK55_RS08195 0.36 -0.9
1,794,071 - LRK55_RS08195 0.36 +0.7
1,794,071 - LRK55_RS08195 0.36 +0.4
1,794,071 - LRK55_RS08195 0.36 +0.3
1,794,071 - LRK55_RS08195 0.36 -0.8
1,794,071 - LRK55_RS08195 0.36 -1.7
1,794,071 - LRK55_RS08195 0.36 +0.3
1,794,071 - LRK55_RS08195 0.36 +0.1
1,794,071 - LRK55_RS08195 0.36 +0.5
1,794,082 + LRK55_RS08195 0.37 +0.3
1,794,083 - LRK55_RS08195 0.37 +0.3
1,794,175 + LRK55_RS08195 0.39 -0.9
1,794,175 + LRK55_RS08195 0.39 +0.1
1,794,176 - LRK55_RS08195 0.39 -0.0
1,794,176 - LRK55_RS08195 0.39 +1.1
1,794,176 - LRK55_RS08195 0.39 +0.3
1,794,176 - LRK55_RS08195 0.39 -0.4
1,794,176 - LRK55_RS08195 0.39 -3.8
1,794,176 - LRK55_RS08195 0.39 +0.1
1,794,176 - LRK55_RS08195 0.39 -0.5
1,794,310 + LRK55_RS08195 0.43 +0.2
1,794,310 + LRK55_RS08195 0.43 +1.4
1,794,541 + LRK55_RS08195 0.50 +0.1
1,794,541 + LRK55_RS08195 0.50 +0.0
1,794,541 + LRK55_RS08195 0.50 -1.5
1,794,541 + LRK55_RS08195 0.50 +0.9
1,794,541 + LRK55_RS08195 0.50 -0.6
1,794,542 - LRK55_RS08195 0.50 +0.8
1,794,542 - LRK55_RS08195 0.50 +0.1
1,794,542 - LRK55_RS08195 0.50 +0.5
1,794,542 - LRK55_RS08195 0.50 +0.5
1,794,604 + LRK55_RS08195 0.52 -1.5
1,794,604 + LRK55_RS08195 0.52 -0.4
1,794,605 - LRK55_RS08195 0.52 -0.7
1,794,605 - LRK55_RS08195 0.52 +0.2
1,794,952 + LRK55_RS08195 0.62 -1.1
1,794,952 + LRK55_RS08195 0.62 +0.4
1,794,952 + LRK55_RS08195 0.62 -0.1
1,794,952 + LRK55_RS08195 0.62 +0.1
1,794,953 - LRK55_RS08195 0.62 +0.3
1,794,953 - LRK55_RS08195 0.62 +0.4
1,794,953 - LRK55_RS08195 0.62 +1.3
1,794,953 - LRK55_RS08195 0.62 -0.3
1,794,953 - LRK55_RS08195 0.62 +0.3
1,794,953 - LRK55_RS08195 0.62 -0.6
1,794,953 - LRK55_RS08195 0.62 +2.4
1,794,953 - LRK55_RS08195 0.62 -0.4
1,794,953 - LRK55_RS08195 0.62 +0.4
1,795,018 + LRK55_RS08195 0.63 +0.3
1,795,019 - LRK55_RS08195 0.63 +0.6
1,795,019 - LRK55_RS08195 0.63 -0.4
1,795,115 - LRK55_RS08195 0.66 -0.2
1,795,117 + LRK55_RS08195 0.66 +0.2
1,795,118 - LRK55_RS08195 0.66 +0.2
1,795,123 + LRK55_RS08195 0.66 +0.6
1,795,123 + LRK55_RS08195 0.66 +0.5
1,795,123 + LRK55_RS08195 0.66 +2.7
1,795,123 + LRK55_RS08195 0.66 +0.6
1,795,123 + LRK55_RS08195 0.66 -1.6
1,795,124 - LRK55_RS08195 0.66 -1.1
1,795,124 - LRK55_RS08195 0.66 +0.7
1,795,124 - LRK55_RS08195 0.66 +1.2
1,795,459 + LRK55_RS08195 0.76 -0.2
1,795,459 + LRK55_RS08195 0.76 +0.3
1,795,459 + LRK55_RS08195 0.76 -1.1
1,795,459 + LRK55_RS08195 0.76 +2.3
1,795,460 - LRK55_RS08195 0.76 -0.3
1,795,867 + LRK55_RS08195 0.88 +0.2
1,795,867 + LRK55_RS08195 0.88 -0.4
1,795,867 + LRK55_RS08195 0.88 -0.3
1,795,867 + LRK55_RS08195 0.88 +2.5
1,795,868 - LRK55_RS08195 0.88 +0.1
1,795,868 - LRK55_RS08195 0.88 -0.2
1,795,868 - LRK55_RS08195 0.88 +0.6
1,795,903 + LRK55_RS08195 0.89 -0.1
1,795,903 + LRK55_RS08195 0.89 -0.1
1,795,903 + LRK55_RS08195 0.89 +0.1
1,795,903 + LRK55_RS08195 0.89 -0.1
1,795,903 + LRK55_RS08195 0.89 +1.0
1,795,904 - LRK55_RS08195 0.89 -0.1
1,795,904 - LRK55_RS08195 0.89 +1.1
1,795,904 - LRK55_RS08195 0.89 -0.1
1,795,904 - LRK55_RS08195 0.89 -0.8
1,795,904 - LRK55_RS08195 0.89 -0.3
1,795,904 - LRK55_RS08195 0.89 -1.3
1,796,077 + -1.4
1,796,077 + +1.0
1,796,077 + +1.2
1,796,077 + -0.8
1,796,078 - -0.2
1,796,078 - +0.1
1,796,078 - +2.1
1,796,078 - -0.2
1,796,078 - -1.7
1,796,078 - -0.5
1,796,090 - -0.9
1,796,129 - +0.9
1,796,129 - -0.8
1,796,149 + +0.3
1,796,149 + +0.7
1,796,149 + +1.2
1,796,149 + -0.9
1,796,150 - -0.5
1,796,150 - +0.5
1,796,150 - -0.3
1,796,150 - +0.6
1,796,170 + -0.1
1,796,171 - +0.2
1,796,171 - +0.7
1,796,171 - +0.1
1,796,171 - +0.4
1,796,203 + -1.2
1,796,203 + -0.1
1,796,203 + +0.3
1,796,204 + +0.2
1,796,227 + -0.6
1,796,227 + -0.1
1,796,254 + +0.1
1,796,254 + -0.8
1,796,255 - +0.2
1,796,255 - +1.5
1,796,255 - +0.7
1,796,255 - -0.5
1,796,255 - -1.3
1,796,255 - -2.3
1,796,417 + -0.6
1,796,417 + -0.0
1,796,418 - +1.2
1,796,418 - +0.0
1,796,418 - -0.7
1,796,418 - -0.4
1,796,418 - +0.8
1,796,418 - -0.4
1,796,418 - -0.1

Or see this region's nucleotide sequence