Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04410

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04405 and LRK55_RS04410 are separated by 103 nucleotidesLRK55_RS04410 and LRK55_RS04415 are separated by 24 nucleotidesLRK55_RS04415 and LRK55_RS04420 are separated by 37 nucleotides LRK55_RS04405: LRK55_RS04405 - energy-dependent translational throttle protein EttA, at 940,545 to 942,212 _RS04405 LRK55_RS04410: LRK55_RS04410 - orotidine-5'-phosphate decarboxylase, at 942,316 to 943,134 _RS04410 LRK55_RS04415: LRK55_RS04415 - hypothetical protein, at 943,159 to 943,416 _RS04415 LRK55_RS04420: LRK55_RS04420 - acyltransferase, at 943,454 to 944,647 _RS04420 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 942.195 kb on + strandat 942.195 kb on + strandat 942.196 kb on - strandat 942.196 kb on - strandat 942.196 kb on - strandat 942.196 kb on - strandat 942.196 kb on - strandat 942.196 kb on - strandat 942.656 kb on - strand, within LRK55_RS04410at 942.686 kb on - strand, within LRK55_RS04410at 942.812 kb on - strand, within LRK55_RS04410at 942.971 kb on + strand, within LRK55_RS04410at 942.971 kb on + strand, within LRK55_RS04410at 942.972 kb on - strand, within LRK55_RS04410at 942.972 kb on - strand, within LRK55_RS04410at 943.045 kb on + strand, within LRK55_RS04410at 943.046 kb on - strand, within LRK55_RS04410at 943.046 kb on - strand, within LRK55_RS04410at 943.046 kb on - strand, within LRK55_RS04410at 943.271 kb on + strand, within LRK55_RS04415at 943.271 kb on + strand, within LRK55_RS04415at 943.271 kb on + strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.272 kb on - strand, within LRK55_RS04415at 943.455 kb on + strandat 943.455 kb on + strandat 943.455 kb on + strandat 943.455 kb on + strandat 943.456 kb on - strandat 943.456 kb on - strandat 943.456 kb on - strandat 943.456 kb on - strandat 943.456 kb on - strandat 943.456 kb on - strandat 943.461 kb on - strandat 943.599 kb on + strand, within LRK55_RS04420at 943.600 kb on - strand, within LRK55_RS04420at 943.600 kb on - strand, within LRK55_RS04420at 943.600 kb on - strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.683 kb on + strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.684 kb on - strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.685 kb on + strand, within LRK55_RS04420at 943.686 kb on - strand, within LRK55_RS04420at 943.686 kb on - strand, within LRK55_RS04420at 943.686 kb on - strand, within LRK55_RS04420at 943.686 kb on - strand, within LRK55_RS04420at 943.692 kb on + strand, within LRK55_RS04420at 943.692 kb on + strand, within LRK55_RS04420at 943.692 kb on + strand, within LRK55_RS04420at 943.693 kb on - strand, within LRK55_RS04420at 943.693 kb on - strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.815 kb on + strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.816 kb on - strand, within LRK55_RS04420at 943.906 kb on + strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.907 kb on - strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.983 kb on + strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 943.984 kb on - strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.077 kb on + strand, within LRK55_RS04420at 944.078 kb on - strand, within LRK55_RS04420at 944.078 kb on - strand, within LRK55_RS04420at 944.118 kb on + strand, within LRK55_RS04420at 944.118 kb on + strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420at 944.119 kb on - strand, within LRK55_RS04420

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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942,195 + +0.2
942,195 + +1.6
942,196 - -1.7
942,196 - +1.1
942,196 - +0.1
942,196 - +1.5
942,196 - -1.2
942,196 - +0.3
942,656 - LRK55_RS04410 0.42 +0.7
942,686 - LRK55_RS04410 0.45 -2.4
942,812 - LRK55_RS04410 0.61 -1.6
942,971 + LRK55_RS04410 0.80 -1.4
942,971 + LRK55_RS04410 0.80 -1.1
942,972 - LRK55_RS04410 0.80 -1.7
942,972 - LRK55_RS04410 0.80 -1.0
943,045 + LRK55_RS04410 0.89 +0.5
943,046 - LRK55_RS04410 0.89 +0.5
943,046 - LRK55_RS04410 0.89 -1.1
943,046 - LRK55_RS04410 0.89 -2.5
943,271 + LRK55_RS04415 0.43 +0.6
943,271 + LRK55_RS04415 0.43 +1.0
943,271 + LRK55_RS04415 0.43 -0.1
943,272 - LRK55_RS04415 0.44 +0.2
943,272 - LRK55_RS04415 0.44 +0.6
943,272 - LRK55_RS04415 0.44 +0.3
943,272 - LRK55_RS04415 0.44 +0.2
943,272 - LRK55_RS04415 0.44 +0.5
943,272 - LRK55_RS04415 0.44 +0.9
943,272 - LRK55_RS04415 0.44 +0.6
943,272 - LRK55_RS04415 0.44 +0.5
943,455 + +0.3
943,455 + +0.3
943,455 + -1.4
943,455 + -0.7
943,456 - -0.1
943,456 - -1.1
943,456 - -0.2
943,456 - -1.0
943,456 - -0.5
943,456 - +0.4
943,461 - +0.1
943,599 + LRK55_RS04420 0.12 -0.5
943,600 - LRK55_RS04420 0.12 +0.0
943,600 - LRK55_RS04420 0.12 -2.4
943,600 - LRK55_RS04420 0.12 +0.5
943,683 + LRK55_RS04420 0.19 +0.6
943,683 + LRK55_RS04420 0.19 -0.4
943,683 + LRK55_RS04420 0.19 -0.4
943,683 + LRK55_RS04420 0.19 +0.3
943,683 + LRK55_RS04420 0.19 -1.2
943,683 + LRK55_RS04420 0.19 +0.2
943,683 + LRK55_RS04420 0.19 +0.3
943,683 + LRK55_RS04420 0.19 +1.0
943,683 + LRK55_RS04420 0.19 -0.9
943,683 + LRK55_RS04420 0.19 -0.2
943,684 - LRK55_RS04420 0.19 +0.1
943,684 - LRK55_RS04420 0.19 +0.6
943,684 - LRK55_RS04420 0.19 +0.5
943,684 - LRK55_RS04420 0.19 -0.1
943,684 - LRK55_RS04420 0.19 -0.1
943,684 - LRK55_RS04420 0.19 -0.1
943,684 - LRK55_RS04420 0.19 +0.2
943,684 - LRK55_RS04420 0.19 -0.3
943,684 - LRK55_RS04420 0.19 +1.6
943,684 - LRK55_RS04420 0.19 +1.0
943,684 - LRK55_RS04420 0.19 +0.3
943,684 - LRK55_RS04420 0.19 +0.1
943,684 - LRK55_RS04420 0.19 +0.6
943,684 - LRK55_RS04420 0.19 +0.1
943,684 - LRK55_RS04420 0.19 +0.7
943,684 - LRK55_RS04420 0.19 +1.0
943,685 + LRK55_RS04420 0.19 +0.3
943,685 + LRK55_RS04420 0.19 -0.3
943,685 + LRK55_RS04420 0.19 -0.1
943,685 + LRK55_RS04420 0.19 -0.5
943,685 + LRK55_RS04420 0.19 -1.0
943,685 + LRK55_RS04420 0.19 +0.4
943,686 - LRK55_RS04420 0.19 +1.6
943,686 - LRK55_RS04420 0.19 -0.7
943,686 - LRK55_RS04420 0.19 -0.0
943,686 - LRK55_RS04420 0.19 +0.5
943,692 + LRK55_RS04420 0.20 +0.5
943,692 + LRK55_RS04420 0.20 -3.3
943,692 + LRK55_RS04420 0.20 +0.9
943,693 - LRK55_RS04420 0.20 -0.2
943,693 - LRK55_RS04420 0.20 -0.5
943,815 + LRK55_RS04420 0.30 +0.9
943,815 + LRK55_RS04420 0.30 +1.0
943,815 + LRK55_RS04420 0.30 +0.3
943,815 + LRK55_RS04420 0.30 -1.5
943,815 + LRK55_RS04420 0.30 +0.1
943,816 - LRK55_RS04420 0.30 -0.5
943,816 - LRK55_RS04420 0.30 -1.1
943,816 - LRK55_RS04420 0.30 +0.5
943,816 - LRK55_RS04420 0.30 +1.1
943,906 + LRK55_RS04420 0.38 -1.1
943,907 - LRK55_RS04420 0.38 +3.1
943,907 - LRK55_RS04420 0.38 +0.7
943,907 - LRK55_RS04420 0.38 +0.5
943,983 + LRK55_RS04420 0.44 -0.2
943,983 + LRK55_RS04420 0.44 -0.5
943,983 + LRK55_RS04420 0.44 -0.5
943,983 + LRK55_RS04420 0.44 -1.8
943,984 - LRK55_RS04420 0.44 +1.1
943,984 - LRK55_RS04420 0.44 -0.3
943,984 - LRK55_RS04420 0.44 +0.2
943,984 - LRK55_RS04420 0.44 +0.6
943,984 - LRK55_RS04420 0.44 +0.5
944,077 + LRK55_RS04420 0.52 +0.3
944,077 + LRK55_RS04420 0.52 +0.0
944,077 + LRK55_RS04420 0.52 -0.7
944,078 - LRK55_RS04420 0.52 -1.9
944,078 - LRK55_RS04420 0.52 -0.2
944,118 + LRK55_RS04420 0.56 +0.1
944,118 + LRK55_RS04420 0.56 -0.9
944,119 - LRK55_RS04420 0.56 -1.0
944,119 - LRK55_RS04420 0.56 +0.1
944,119 - LRK55_RS04420 0.56 -0.5

Or see this region's nucleotide sequence