Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01795

Experiment: R2A with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01790 and LRK55_RS01795 are separated by 53 nucleotidesLRK55_RS01795 and LRK55_RS01800 are separated by 4 nucleotidesLRK55_RS01800 and LRK55_RS01805 overlap by 4 nucleotidesLRK55_RS01805 and LRK55_RS01810 are separated by 197 nucleotides LRK55_RS01790: LRK55_RS01790 - cation diffusion facilitator family transporter, at 377,243 to 378,145 _RS01790 LRK55_RS01795: LRK55_RS01795 - DUF2058 domain-containing protein, at 378,199 to 378,738 _RS01795 LRK55_RS01800: LRK55_RS01800 - VOC family protein, at 378,743 to 379,135 _RS01800 LRK55_RS01805: LRK55_RS01805 - MmcQ/YjbR family DNA-binding protein, at 379,132 to 379,530 _RS01805 LRK55_RS01810: LRK55_RS01810 - GNAT family N-acetyltransferase, at 379,728 to 380,333 _RS01810 Position (kb) 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 377.210 kb on + strandat 377.210 kb on + strandat 377.210 kb on + strandat 377.210 kb on + strandat 377.211 kb on - strandat 377.211 kb on - strandat 377.477 kb on + strand, within LRK55_RS01790at 377.477 kb on + strand, within LRK55_RS01790at 377.478 kb on - strand, within LRK55_RS01790at 377.503 kb on - strand, within LRK55_RS01790at 377.537 kb on + strand, within LRK55_RS01790at 377.537 kb on + strand, within LRK55_RS01790at 377.537 kb on + strand, within LRK55_RS01790at 377.538 kb on - strand, within LRK55_RS01790at 377.538 kb on - strand, within LRK55_RS01790at 377.538 kb on - strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.658 kb on + strand, within LRK55_RS01790at 377.659 kb on - strand, within LRK55_RS01790at 377.659 kb on - strand, within LRK55_RS01790at 377.659 kb on - strand, within LRK55_RS01790at 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.158 kb on + strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.159 kb on - strandat 378.479 kb on - strand, within LRK55_RS01795at 378.583 kb on + strand, within LRK55_RS01795at 378.583 kb on + strand, within LRK55_RS01795at 378.584 kb on - strand, within LRK55_RS01795at 378.697 kb on + strandat 378.697 kb on + strandat 378.697 kb on + strandat 378.697 kb on + strandat 378.697 kb on + strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.698 kb on - strandat 378.700 kb on + strandat 378.701 kb on - strandat 378.780 kb on + strandat 378.780 kb on + strandat 378.780 kb on + strandat 378.810 kb on + strand, within LRK55_RS01800at 378.811 kb on - strand, within LRK55_RS01800at 378.953 kb on - strand, within LRK55_RS01800at 378.953 kb on - strand, within LRK55_RS01800at 379.071 kb on + strand, within LRK55_RS01800at 379.071 kb on + strand, within LRK55_RS01800at 379.071 kb on + strand, within LRK55_RS01800at 379.071 kb on + strand, within LRK55_RS01800at 379.072 kb on - strand, within LRK55_RS01800at 379.072 kb on - strand, within LRK55_RS01800at 379.072 kb on - strand, within LRK55_RS01800at 379.092 kb on + strand, within LRK55_RS01800at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.209 kb on + strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.210 kb on - strand, within LRK55_RS01805at 379.211 kb on + strand, within LRK55_RS01805at 379.211 kb on + strand, within LRK55_RS01805at 379.211 kb on + strand, within LRK55_RS01805at 379.211 kb on + strand, within LRK55_RS01805at 379.212 kb on - strand, within LRK55_RS01805at 379.212 kb on - strand, within LRK55_RS01805at 379.212 kb on - strand, within LRK55_RS01805at 379.212 kb on - strand, within LRK55_RS01805at 379.212 kb on - strand, within LRK55_RS01805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x
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377,210 + -1.3
377,210 + -0.1
377,210 + +0.0
377,210 + +0.9
377,211 - -0.1
377,211 - +0.3
377,477 + LRK55_RS01790 0.26 +1.3
377,477 + LRK55_RS01790 0.26 +1.0
377,478 - LRK55_RS01790 0.26 -1.2
377,503 - LRK55_RS01790 0.29 -0.0
377,537 + LRK55_RS01790 0.33 -0.1
377,537 + LRK55_RS01790 0.33 +0.6
377,537 + LRK55_RS01790 0.33 -0.0
377,538 - LRK55_RS01790 0.33 -0.4
377,538 - LRK55_RS01790 0.33 +0.5
377,538 - LRK55_RS01790 0.33 +1.4
377,658 + LRK55_RS01790 0.46 -1.2
377,658 + LRK55_RS01790 0.46 -0.3
377,658 + LRK55_RS01790 0.46 -0.3
377,658 + LRK55_RS01790 0.46 -0.3
377,658 + LRK55_RS01790 0.46 -0.8
377,658 + LRK55_RS01790 0.46 -0.1
377,658 + LRK55_RS01790 0.46 -0.4
377,659 - LRK55_RS01790 0.46 +0.6
377,659 - LRK55_RS01790 0.46 -0.2
377,659 - LRK55_RS01790 0.46 -0.8
378,158 + +0.1
378,158 + +0.3
378,158 + +0.7
378,158 + +0.7
378,158 + +0.1
378,158 + +0.8
378,158 + +0.6
378,158 + -0.9
378,158 + -1.5
378,159 - +0.3
378,159 - +0.7
378,159 - +0.9
378,159 - +0.4
378,159 - +0.8
378,159 - -0.5
378,159 - -0.4
378,159 - +0.4
378,479 - LRK55_RS01795 0.52 +0.5
378,583 + LRK55_RS01795 0.71 +0.9
378,583 + LRK55_RS01795 0.71 -0.6
378,584 - LRK55_RS01795 0.71 -0.3
378,697 + +0.0
378,697 + -1.5
378,697 + +0.3
378,697 + -0.7
378,697 + -3.1
378,698 - +0.3
378,698 - +0.3
378,698 - -0.5
378,698 - -0.6
378,698 - -1.5
378,698 - -1.7
378,698 - -2.7
378,700 + -0.5
378,701 - +0.1
378,780 + -1.2
378,780 + -2.0
378,780 + +0.8
378,810 + LRK55_RS01800 0.17 -0.6
378,811 - LRK55_RS01800 0.17 +2.6
378,953 - LRK55_RS01800 0.53 +0.8
378,953 - LRK55_RS01800 0.53 -0.9
379,071 + LRK55_RS01800 0.83 -2.3
379,071 + LRK55_RS01800 0.83 -1.0
379,071 + LRK55_RS01800 0.83 -0.3
379,071 + LRK55_RS01800 0.83 -0.1
379,072 - LRK55_RS01800 0.84 +1.3
379,072 - LRK55_RS01800 0.84 -0.8
379,072 - LRK55_RS01800 0.84 -0.5
379,092 + LRK55_RS01800 0.89 +0.3
379,209 + LRK55_RS01805 0.19 -0.9
379,209 + LRK55_RS01805 0.19 -0.0
379,209 + LRK55_RS01805 0.19 +0.3
379,209 + LRK55_RS01805 0.19 -2.8
379,209 + LRK55_RS01805 0.19 +0.3
379,209 + LRK55_RS01805 0.19 +0.0
379,209 + LRK55_RS01805 0.19 +0.7
379,210 - LRK55_RS01805 0.20 -1.2
379,210 - LRK55_RS01805 0.20 -0.3
379,210 - LRK55_RS01805 0.20 -0.1
379,210 - LRK55_RS01805 0.20 +0.1
379,210 - LRK55_RS01805 0.20 -0.1
379,210 - LRK55_RS01805 0.20 -0.6
379,211 + LRK55_RS01805 0.20 -0.5
379,211 + LRK55_RS01805 0.20 -0.0
379,211 + LRK55_RS01805 0.20 +2.3
379,211 + LRK55_RS01805 0.20 -1.7
379,212 - LRK55_RS01805 0.20 +1.0
379,212 - LRK55_RS01805 0.20 +0.6
379,212 - LRK55_RS01805 0.20 +1.5
379,212 - LRK55_RS01805 0.20 +1.1
379,212 - LRK55_RS01805 0.20 +0.3

Or see this region's nucleotide sequence