Experiment: R2A with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00350 and LRK55_RS00355 are separated by 128 nucleotides LRK55_RS00355 and LRK55_RS00360 overlap by 1 nucleotides
LRK55_RS00350: LRK55_RS00350 - HD domain-containing protein, at 68,710 to 69,342
_RS00350
LRK55_RS00355: LRK55_RS00355 - alanine racemase, at 69,471 to 70,544
_RS00355
LRK55_RS00360: LRK55_RS00360 - D-amino acid dehydrogenase, at 70,544 to 71,824
_RS00360
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 68.483 kb on - strand at 68.489 kb on + strand at 68.489 kb on + strand at 68.490 kb on - strand at 68.490 kb on - strand at 68.490 kb on - strand at 68.514 kb on + strand at 68.514 kb on + strand at 68.514 kb on + strand at 68.514 kb on + strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.515 kb on - strand at 68.546 kb on + strand at 68.546 kb on + strand at 68.546 kb on + strand at 68.546 kb on + strand at 68.546 kb on + strand at 68.546 kb on + strand at 68.547 kb on - strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.578 kb on + strand at 68.579 kb on - strand at 68.604 kb on - strand at 68.611 kb on + strand at 68.611 kb on + strand at 68.611 kb on + strand at 68.622 kb on + strand at 68.625 kb on + strand at 68.702 kb on - strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.713 kb on + strand at 68.714 kb on - strand at 68.714 kb on - strand at 68.714 kb on - strand at 68.714 kb on - strand at 68.714 kb on - strand at 68.714 kb on - strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.715 kb on + strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.716 kb on - strand at 68.733 kb on + strand at 68.733 kb on + strand at 68.733 kb on + strand at 68.734 kb on - strand at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.837 kb on + strand, within LRK55_RS00350 at 68.838 kb on - strand, within LRK55_RS00350 at 68.840 kb on + strand, within LRK55_RS00350 at 68.840 kb on + strand, within LRK55_RS00350 at 68.840 kb on + strand, within LRK55_RS00350 at 68.841 kb on - strand, within LRK55_RS00350 at 68.999 kb on + strand, within LRK55_RS00350 at 68.999 kb on + strand, within LRK55_RS00350 at 68.999 kb on + strand, within LRK55_RS00350 at 69.245 kb on + strand, within LRK55_RS00350 at 69.245 kb on + strand, within LRK55_RS00350 at 69.246 kb on - strand, within LRK55_RS00350 at 69.246 kb on - strand, within LRK55_RS00350 at 69.251 kb on + strand, within LRK55_RS00350 at 69.252 kb on - strand, within LRK55_RS00350 at 69.252 kb on - strand, within LRK55_RS00350 at 69.437 kb on + strand at 69.437 kb on + strand at 69.437 kb on + strand at 69.437 kb on + strand at 69.437 kb on + strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 69.438 kb on - strand at 70.574 kb on - strand at 70.574 kb on - strand at 70.578 kb on + strand at 70.578 kb on + strand at 70.578 kb on + strand at 70.579 kb on - strand at 70.579 kb on - strand at 70.579 kb on - strand at 70.644 kb on + strand at 70.644 kb on + strand at 70.645 kb on - strand at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.701 kb on + strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.702 kb on - strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.932 kb on + strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.933 kb on - strand, within LRK55_RS00360 at 70.998 kb on + strand, within LRK55_RS00360 at 70.998 kb on + strand, within LRK55_RS00360 at 70.999 kb on - strand, within LRK55_RS00360 at 71.013 kb on + strand, within LRK55_RS00360 at 71.013 kb on + strand, within LRK55_RS00360 at 71.013 kb on + strand, within LRK55_RS00360 at 71.014 kb on - strand, within LRK55_RS00360 at 71.014 kb on - strand, within LRK55_RS00360 at 71.014 kb on - strand, within LRK55_RS00360 at 71.058 kb on + strand, within LRK55_RS00360 at 71.058 kb on + strand, within LRK55_RS00360 at 71.058 kb on + strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.059 kb on - strand, within LRK55_RS00360 at 71.079 kb on + strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.080 kb on - strand, within LRK55_RS00360 at 71.334 kb on + strand, within LRK55_RS00360 at 71.346 kb on + strand, within LRK55_RS00360 at 71.346 kb on + strand, within LRK55_RS00360 at 71.346 kb on + strand, within LRK55_RS00360 at 71.347 kb on - strand, within LRK55_RS00360 at 71.347 kb on - strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.436 kb on + strand, within LRK55_RS00360 at 71.437 kb on - strand, within LRK55_RS00360 at 71.484 kb on + strand, within LRK55_RS00360 at 71.485 kb on - strand, within LRK55_RS00360 at 71.485 kb on - strand, within LRK55_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Metal_ion_mix_sitestressplate 2 x remove 68,483 - -2.6 68,489 + +0.1 68,489 + -0.1 68,490 - -1.4 68,490 - +0.7 68,490 - +0.3 68,514 + +1.0 68,514 + +0.1 68,514 + -0.6 68,514 + -0.5 68,515 - +0.7 68,515 - -0.9 68,515 - -0.7 68,515 - +0.5 68,515 - -0.9 68,515 - -0.5 68,515 - -1.5 68,515 - -0.1 68,546 + -1.9 68,546 + -2.8 68,546 + -0.2 68,546 + +0.3 68,546 + -0.5 68,546 + -1.7 68,547 - -0.7 68,578 + +2.1 68,578 + -1.5 68,578 + +0.7 68,578 + +0.4 68,578 + -0.4 68,578 + +0.1 68,578 + -0.3 68,579 - -2.1 68,604 - +0.2 68,611 + +0.1 68,611 + -2.4 68,611 + +0.7 68,622 + +1.5 68,625 + +0.1 68,702 - -0.3 68,713 + -1.5 68,713 + +1.5 68,713 + -0.0 68,713 + -0.5 68,713 + +1.4 68,713 + +0.5 68,713 + -0.5 68,714 - +0.6 68,714 - -1.3 68,714 - +0.2 68,714 - +1.9 68,714 - +0.6 68,714 - +0.8 68,715 + -0.6 68,715 + -0.8 68,715 + +0.7 68,715 + +0.3 68,715 + +0.4 68,715 + +1.1 68,715 + -0.7 68,715 + -1.7 68,715 + +0.2 68,715 + +1.6 68,716 - -1.2 68,716 - +0.3 68,716 - -0.7 68,716 - +0.0 68,716 - -0.9 68,716 - +1.5 68,716 - -1.4 68,716 - +0.3 68,716 - -0.4 68,733 + -0.2 68,733 + -0.0 68,733 + +0.3 68,734 - +1.8 68,837 + LRK55_RS00350 0.20 -0.3 68,837 + LRK55_RS00350 0.20 +0.2 68,837 + LRK55_RS00350 0.20 -0.9 68,837 + LRK55_RS00350 0.20 +0.2 68,837 + LRK55_RS00350 0.20 -0.3 68,837 + LRK55_RS00350 0.20 +0.1 68,837 + LRK55_RS00350 0.20 -0.1 68,837 + LRK55_RS00350 0.20 +1.0 68,837 + LRK55_RS00350 0.20 -0.0 68,837 + LRK55_RS00350 0.20 +0.8 68,838 - LRK55_RS00350 0.20 -1.3 68,840 + LRK55_RS00350 0.21 +0.1 68,840 + LRK55_RS00350 0.21 +0.2 68,840 + LRK55_RS00350 0.21 -0.0 68,841 - LRK55_RS00350 0.21 -0.7 68,999 + LRK55_RS00350 0.46 -0.3 68,999 + LRK55_RS00350 0.46 -0.4 68,999 + LRK55_RS00350 0.46 +0.6 69,245 + LRK55_RS00350 0.85 -0.2 69,245 + LRK55_RS00350 0.85 +0.9 69,246 - LRK55_RS00350 0.85 +0.1 69,246 - LRK55_RS00350 0.85 -1.0 69,251 + LRK55_RS00350 0.85 +0.6 69,252 - LRK55_RS00350 0.86 -0.2 69,252 - LRK55_RS00350 0.86 -1.2 69,437 + -0.4 69,437 + -0.3 69,437 + +0.3 69,437 + -0.4 69,437 + -0.5 69,438 - +0.3 69,438 - +1.0 69,438 - +0.2 69,438 - +0.4 69,438 - -0.7 69,438 - -0.5 69,438 - -1.1 69,438 - -1.4 69,438 - +1.3 69,438 - -0.3 70,574 - -1.3 70,574 - -1.7 70,578 + -0.4 70,578 + -0.6 70,578 + -0.9 70,579 - -0.7 70,579 - +0.7 70,579 - -0.2 70,644 + -1.0 70,644 + -0.3 70,645 - -0.5 70,701 + LRK55_RS00360 0.12 -0.1 70,701 + LRK55_RS00360 0.12 -0.3 70,701 + LRK55_RS00360 0.12 -0.7 70,701 + LRK55_RS00360 0.12 -0.4 70,701 + LRK55_RS00360 0.12 -1.2 70,701 + LRK55_RS00360 0.12 +1.0 70,701 + LRK55_RS00360 0.12 -0.7 70,701 + LRK55_RS00360 0.12 +1.0 70,701 + LRK55_RS00360 0.12 -1.3 70,702 - LRK55_RS00360 0.12 -0.9 70,702 - LRK55_RS00360 0.12 +0.0 70,702 - LRK55_RS00360 0.12 +0.1 70,702 - LRK55_RS00360 0.12 +0.4 70,702 - LRK55_RS00360 0.12 -1.9 70,702 - LRK55_RS00360 0.12 +1.0 70,702 - LRK55_RS00360 0.12 -1.2 70,932 + LRK55_RS00360 0.30 +0.2 70,932 + LRK55_RS00360 0.30 -0.5 70,932 + LRK55_RS00360 0.30 -2.4 70,932 + LRK55_RS00360 0.30 -0.7 70,932 + LRK55_RS00360 0.30 -1.5 70,932 + LRK55_RS00360 0.30 -0.1 70,932 + LRK55_RS00360 0.30 -0.7 70,932 + LRK55_RS00360 0.30 +0.4 70,932 + LRK55_RS00360 0.30 +0.5 70,932 + LRK55_RS00360 0.30 -0.3 70,932 + LRK55_RS00360 0.30 -0.3 70,932 + LRK55_RS00360 0.30 -0.9 70,933 - LRK55_RS00360 0.30 -0.5 70,933 - LRK55_RS00360 0.30 -2.2 70,933 - LRK55_RS00360 0.30 +1.2 70,933 - LRK55_RS00360 0.30 -1.3 70,933 - LRK55_RS00360 0.30 -1.7 70,933 - LRK55_RS00360 0.30 -1.9 70,933 - LRK55_RS00360 0.30 +0.1 70,933 - LRK55_RS00360 0.30 +0.3 70,998 + LRK55_RS00360 0.35 -0.4 70,998 + LRK55_RS00360 0.35 -1.4 70,999 - LRK55_RS00360 0.36 +0.1 71,013 + LRK55_RS00360 0.37 -0.3 71,013 + LRK55_RS00360 0.37 -1.8 71,013 + LRK55_RS00360 0.37 -0.3 71,014 - LRK55_RS00360 0.37 +0.4 71,014 - LRK55_RS00360 0.37 -2.0 71,014 - LRK55_RS00360 0.37 +0.3 71,058 + LRK55_RS00360 0.40 +0.1 71,058 + LRK55_RS00360 0.40 -0.3 71,058 + LRK55_RS00360 0.40 -0.8 71,059 - LRK55_RS00360 0.40 +0.0 71,059 - LRK55_RS00360 0.40 +0.2 71,059 - LRK55_RS00360 0.40 +0.3 71,059 - LRK55_RS00360 0.40 -0.4 71,059 - LRK55_RS00360 0.40 +1.3 71,059 - LRK55_RS00360 0.40 +0.7 71,059 - LRK55_RS00360 0.40 +0.5 71,059 - LRK55_RS00360 0.40 -0.7 71,059 - LRK55_RS00360 0.40 -0.7 71,059 - LRK55_RS00360 0.40 +1.1 71,059 - LRK55_RS00360 0.40 +0.1 71,059 - LRK55_RS00360 0.40 -0.4 71,059 - LRK55_RS00360 0.40 +0.5 71,079 + LRK55_RS00360 0.42 +0.1 71,080 - LRK55_RS00360 0.42 +0.3 71,080 - LRK55_RS00360 0.42 +0.5 71,080 - LRK55_RS00360 0.42 +1.2 71,080 - LRK55_RS00360 0.42 -0.9 71,080 - LRK55_RS00360 0.42 +0.3 71,080 - LRK55_RS00360 0.42 -0.9 71,080 - LRK55_RS00360 0.42 +0.3 71,334 + LRK55_RS00360 0.62 -0.4 71,346 + LRK55_RS00360 0.63 -0.2 71,346 + LRK55_RS00360 0.63 -1.3 71,346 + LRK55_RS00360 0.63 -1.5 71,347 - LRK55_RS00360 0.63 +0.6 71,347 - LRK55_RS00360 0.63 +0.0 71,436 + LRK55_RS00360 0.70 -0.6 71,436 + LRK55_RS00360 0.70 -0.3 71,436 + LRK55_RS00360 0.70 +0.1 71,436 + LRK55_RS00360 0.70 +0.3 71,436 + LRK55_RS00360 0.70 -0.9 71,436 + LRK55_RS00360 0.70 +0.4 71,437 - LRK55_RS00360 0.70 +1.6 71,484 + LRK55_RS00360 0.73 +0.3 71,485 - LRK55_RS00360 0.73 +0.0 71,485 - LRK55_RS00360 0.73 +0.2
Or see this region's nucleotide sequence