Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS11375

Experiment: Anaerobic; Uranyl acetate 80 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS11360 and ABCV34_RS11365 are separated by 11 nucleotidesABCV34_RS11365 and ABCV34_RS11370 are separated by 9 nucleotidesABCV34_RS11370 and ABCV34_RS11375 are separated by 13 nucleotidesABCV34_RS11375 and ABCV34_RS11380 are separated by 10 nucleotidesABCV34_RS11380 and ABCV34_RS11385 are separated by 277 nucleotides ABCV34_RS11360: ABCV34_RS11360 - 30S ribosomal protein S8, at 2,409,231 to 2,409,626 _RS11360 ABCV34_RS11365: ABCV34_RS11365 - 30S ribosomal protein S14, at 2,409,638 to 2,409,943 _RS11365 ABCV34_RS11370: ABCV34_RS11370 - 50S ribosomal protein L5, at 2,409,953 to 2,410,492 _RS11370 ABCV34_RS11375: ABCV34_RS11375 - 50S ribosomal protein L24, at 2,410,506 to 2,410,826 _RS11375 ABCV34_RS11380: ABCV34_RS11380 - 50S ribosomal protein L14, at 2,410,837 to 2,411,205 _RS11380 ABCV34_RS11385: ABCV34_RS11385 - LapD/MoxY N-terminal periplasmic domain-containing protein, at 2,411,483 to 2,413,381 _RS11385 Position (kb) 2410 2411Strain fitness (log2 ratio) -3 -2 -1 0 1at 2411.509 kb on - strandat 2411.556 kb on + strandat 2411.556 kb on + strandat 2411.556 kb on + strandat 2411.665 kb on - strandat 2411.799 kb on + strand, within ABCV34_RS11385at 2411.800 kb on - strand, within ABCV34_RS11385

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Uranyl acetate 80 uM
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2,411,509 - -1.2
2,411,556 + -3.0
2,411,556 + +0.0
2,411,556 + -1.5
2,411,665 - -1.8
2,411,799 + ABCV34_RS11385 0.17 -1.7
2,411,800 - ABCV34_RS11385 0.17 -1.6

Or see this region's nucleotide sequence