Experiment: Anaerobic; Uranyl acetate 80 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02770 and ABCV34_RS02775 are separated by 114 nucleotides ABCV34_RS02775 and ABCV34_RS02780 are separated by 72 nucleotides
ABCV34_RS02770: ABCV34_RS02770 - PDR/VanB family oxidoreductase, at 618,947 to 619,921
_RS02770
ABCV34_RS02775: ABCV34_RS02775 - ABC transporter substrate-binding protein, at 620,036 to 621,205
_RS02775
ABCV34_RS02780: ABCV34_RS02780 - aldo/keto reductase, at 621,278 to 622,276
_RS02780
Position (kb) 620
621
622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 619.094 kb on + strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.095 kb on - strand, within ABCV34_RS02770 at 619.106 kb on + strand, within ABCV34_RS02770 at 619.106 kb on + strand, within ABCV34_RS02770 at 619.107 kb on - strand, within ABCV34_RS02770 at 619.107 kb on - strand, within ABCV34_RS02770 at 619.304 kb on - strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.364 kb on + strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.365 kb on - strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.517 kb on + strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.518 kb on - strand, within ABCV34_RS02770 at 619.538 kb on + strand, within ABCV34_RS02770 at 619.539 kb on - strand, within ABCV34_RS02770 at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.033 kb on + strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.034 kb on - strand at 620.049 kb on + strand at 620.050 kb on - strand at 620.050 kb on - strand at 620.192 kb on + strand, within ABCV34_RS02775 at 620.192 kb on + strand, within ABCV34_RS02775 at 620.193 kb on - strand, within ABCV34_RS02775 at 620.193 kb on - strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.441 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.452 kb on + strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.453 kb on - strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.525 kb on + strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.526 kb on - strand, within ABCV34_RS02775 at 620.544 kb on - strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.623 kb on + strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.624 kb on - strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.654 kb on + strand, within ABCV34_RS02775 at 620.800 kb on + strand, within ABCV34_RS02775 at 620.861 kb on + strand, within ABCV34_RS02775 at 620.862 kb on - strand, within ABCV34_RS02775 at 620.862 kb on - strand, within ABCV34_RS02775 at 620.910 kb on - strand, within ABCV34_RS02775 at 620.922 kb on - strand, within ABCV34_RS02775 at 621.116 kb on + strand at 621.116 kb on + strand at 621.116 kb on + strand at 621.117 kb on - strand at 621.117 kb on - strand at 621.117 kb on - strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.118 kb on + strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.119 kb on - strand at 621.203 kb on + strand at 621.204 kb on - strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.216 kb on + strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.217 kb on - strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.223 kb on + strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.224 kb on - strand at 621.241 kb on + strand at 621.241 kb on + strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.242 kb on - strand at 621.265 kb on + strand at 621.277 kb on + strand at 621.277 kb on + strand at 621.277 kb on + strand at 621.278 kb on - strand at 621.354 kb on - strand at 621.613 kb on + strand, within ABCV34_RS02780 at 621.614 kb on - strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.632 kb on + strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.633 kb on - strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.635 kb on + strand, within ABCV34_RS02780 at 621.636 kb on - strand, within ABCV34_RS02780 at 621.636 kb on - strand, within ABCV34_RS02780 at 621.800 kb on + strand, within ABCV34_RS02780 at 621.800 kb on + strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.801 kb on - strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.988 kb on + strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780 at 621.989 kb on - strand, within ABCV34_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; Uranyl acetate 80 uM remove 619,094 + ABCV34_RS02770 0.15 -1.7 619,095 - ABCV34_RS02770 0.15 -1.5 619,095 - ABCV34_RS02770 0.15 -1.9 619,095 - ABCV34_RS02770 0.15 -3.1 619,095 - ABCV34_RS02770 0.15 -1.3 619,106 + ABCV34_RS02770 0.16 -1.3 619,106 + ABCV34_RS02770 0.16 -1.3 619,107 - ABCV34_RS02770 0.16 -2.5 619,107 - ABCV34_RS02770 0.16 -2.9 619,304 - ABCV34_RS02770 0.37 -1.6 619,364 + ABCV34_RS02770 0.43 -1.8 619,364 + ABCV34_RS02770 0.43 -1.2 619,364 + ABCV34_RS02770 0.43 -2.0 619,364 + ABCV34_RS02770 0.43 -2.5 619,365 - ABCV34_RS02770 0.43 -1.9 619,365 - ABCV34_RS02770 0.43 -1.5 619,365 - ABCV34_RS02770 0.43 -1.3 619,365 - ABCV34_RS02770 0.43 -1.8 619,365 - ABCV34_RS02770 0.43 -2.1 619,365 - ABCV34_RS02770 0.43 -1.1 619,365 - ABCV34_RS02770 0.43 -3.3 619,365 - ABCV34_RS02770 0.43 -0.8 619,365 - ABCV34_RS02770 0.43 -1.3 619,365 - ABCV34_RS02770 0.43 -1.6 619,517 + ABCV34_RS02770 0.58 -2.4 619,517 + ABCV34_RS02770 0.58 -1.6 619,517 + ABCV34_RS02770 0.58 -1.3 619,517 + ABCV34_RS02770 0.58 -2.5 619,517 + ABCV34_RS02770 0.58 -0.6 619,517 + ABCV34_RS02770 0.58 -1.4 619,517 + ABCV34_RS02770 0.58 -0.3 619,517 + ABCV34_RS02770 0.58 -1.5 619,518 - ABCV34_RS02770 0.59 -1.8 619,518 - ABCV34_RS02770 0.59 +0.5 619,518 - ABCV34_RS02770 0.59 -1.9 619,518 - ABCV34_RS02770 0.59 -0.3 619,518 - ABCV34_RS02770 0.59 -2.2 619,518 - ABCV34_RS02770 0.59 -1.3 619,518 - ABCV34_RS02770 0.59 -1.7 619,538 + ABCV34_RS02770 0.61 -1.4 619,539 - ABCV34_RS02770 0.61 -1.6 619,832 + -1.4 619,832 + -1.3 619,832 + -2.6 619,832 + -1.6 619,832 + -1.1 619,832 + -1.5 619,832 + -1.3 619,833 - -2.0 619,833 - -1.8 619,833 - -2.0 619,833 - -1.6 619,833 - -0.4 619,833 - -1.5 619,833 - -1.2 620,033 + -0.1 620,033 + -2.8 620,033 + -2.6 620,033 + -0.8 620,033 + -1.5 620,033 + -2.6 620,033 + -1.4 620,033 + -0.4 620,033 + -2.0 620,033 + -1.6 620,033 + -1.6 620,033 + -1.3 620,033 + -1.7 620,033 + -1.8 620,033 + -2.6 620,033 + -2.3 620,033 + +2.2 620,033 + -0.4 620,034 - +0.5 620,034 - -1.4 620,034 - -0.7 620,034 - -1.0 620,034 - -1.8 620,034 - -1.4 620,034 - -1.0 620,034 - -1.4 620,034 - -4.4 620,034 - -1.5 620,034 - -1.7 620,034 - -1.4 620,034 - -1.5 620,049 + -1.4 620,050 - -0.4 620,050 - -1.9 620,192 + ABCV34_RS02775 0.13 -1.7 620,192 + ABCV34_RS02775 0.13 -0.8 620,193 - ABCV34_RS02775 0.13 -0.6 620,193 - ABCV34_RS02775 0.13 -1.4 620,441 + ABCV34_RS02775 0.35 -2.2 620,441 + ABCV34_RS02775 0.35 -1.6 620,441 + ABCV34_RS02775 0.35 -1.6 620,452 + ABCV34_RS02775 0.36 -2.0 620,452 + ABCV34_RS02775 0.36 +0.2 620,452 + ABCV34_RS02775 0.36 +0.6 620,453 - ABCV34_RS02775 0.36 -2.1 620,453 - ABCV34_RS02775 0.36 -1.2 620,453 - ABCV34_RS02775 0.36 -0.0 620,453 - ABCV34_RS02775 0.36 -1.6 620,525 + ABCV34_RS02775 0.42 -0.2 620,525 + ABCV34_RS02775 0.42 -2.0 620,525 + ABCV34_RS02775 0.42 -2.0 620,525 + ABCV34_RS02775 0.42 -0.7 620,525 + ABCV34_RS02775 0.42 -2.3 620,525 + ABCV34_RS02775 0.42 -0.6 620,525 + ABCV34_RS02775 0.42 +1.2 620,525 + ABCV34_RS02775 0.42 -1.5 620,525 + ABCV34_RS02775 0.42 -3.5 620,526 - ABCV34_RS02775 0.42 -1.4 620,526 - ABCV34_RS02775 0.42 -0.9 620,526 - ABCV34_RS02775 0.42 -0.8 620,526 - ABCV34_RS02775 0.42 +1.7 620,526 - ABCV34_RS02775 0.42 -1.8 620,526 - ABCV34_RS02775 0.42 -1.3 620,526 - ABCV34_RS02775 0.42 -0.4 620,526 - ABCV34_RS02775 0.42 -1.5 620,526 - ABCV34_RS02775 0.42 -2.6 620,544 - ABCV34_RS02775 0.43 -0.5 620,623 + ABCV34_RS02775 0.50 -0.8 620,623 + ABCV34_RS02775 0.50 -0.6 620,623 + ABCV34_RS02775 0.50 -0.6 620,623 + ABCV34_RS02775 0.50 -0.9 620,623 + ABCV34_RS02775 0.50 -2.3 620,623 + ABCV34_RS02775 0.50 -0.1 620,623 + ABCV34_RS02775 0.50 -2.0 620,623 + ABCV34_RS02775 0.50 -3.5 620,624 - ABCV34_RS02775 0.50 -1.7 620,624 - ABCV34_RS02775 0.50 -1.2 620,624 - ABCV34_RS02775 0.50 -0.8 620,624 - ABCV34_RS02775 0.50 -1.4 620,624 - ABCV34_RS02775 0.50 -1.6 620,654 + ABCV34_RS02775 0.53 -2.7 620,654 + ABCV34_RS02775 0.53 -0.0 620,654 + ABCV34_RS02775 0.53 -3.3 620,654 + ABCV34_RS02775 0.53 -1.6 620,800 + ABCV34_RS02775 0.65 -2.9 620,861 + ABCV34_RS02775 0.71 -0.1 620,862 - ABCV34_RS02775 0.71 -2.3 620,862 - ABCV34_RS02775 0.71 -1.8 620,910 - ABCV34_RS02775 0.75 -1.1 620,922 - ABCV34_RS02775 0.76 -0.9 621,116 + -1.3 621,116 + -1.5 621,116 + -2.0 621,117 - -1.3 621,117 - -0.9 621,117 - -0.2 621,118 + -1.8 621,118 + +0.5 621,118 + -2.1 621,118 + -1.5 621,119 - -3.5 621,119 - -1.1 621,119 - -0.8 621,119 - -2.2 621,119 - -0.4 621,119 - -1.4 621,203 + -1.8 621,204 - -1.4 621,216 + -0.8 621,216 + -0.3 621,216 + -1.1 621,216 + -2.2 621,216 + -1.1 621,216 + +0.7 621,217 - +0.2 621,217 - -3.2 621,217 - -2.1 621,217 - -2.0 621,217 - -2.2 621,217 - -0.4 621,217 - -1.8 621,217 - -1.6 621,217 - -1.6 621,217 - -2.4 621,217 - -1.6 621,223 + -0.5 621,223 + +0.7 621,223 + -0.5 621,223 + -1.8 621,223 + -2.7 621,223 + -1.9 621,223 + -3.0 621,224 - -1.4 621,224 - -1.8 621,224 - -1.6 621,224 - -1.6 621,224 - -0.8 621,224 - -1.6 621,224 - -2.5 621,224 - -1.0 621,241 + -2.1 621,241 + -3.0 621,242 - -1.9 621,242 - -3.2 621,242 - -1.3 621,242 - -1.7 621,242 - -0.4 621,265 + +0.0 621,277 + -0.4 621,277 + +0.2 621,277 + -1.4 621,278 - -2.4 621,354 - +0.2 621,613 + ABCV34_RS02780 0.34 -0.6 621,614 - ABCV34_RS02780 0.34 -1.0 621,632 + ABCV34_RS02780 0.35 -0.8 621,632 + ABCV34_RS02780 0.35 -1.5 621,632 + ABCV34_RS02780 0.35 -1.1 621,632 + ABCV34_RS02780 0.35 -0.5 621,632 + ABCV34_RS02780 0.35 -2.9 621,632 + ABCV34_RS02780 0.35 -1.9 621,633 - ABCV34_RS02780 0.36 -0.6 621,633 - ABCV34_RS02780 0.36 -1.4 621,633 - ABCV34_RS02780 0.36 -1.4 621,633 - ABCV34_RS02780 0.36 -3.3 621,633 - ABCV34_RS02780 0.36 -2.0 621,633 - ABCV34_RS02780 0.36 -1.4 621,633 - ABCV34_RS02780 0.36 -3.2 621,635 + ABCV34_RS02780 0.36 +0.0 621,635 + ABCV34_RS02780 0.36 -1.1 621,635 + ABCV34_RS02780 0.36 -1.6 621,636 - ABCV34_RS02780 0.36 +1.2 621,636 - ABCV34_RS02780 0.36 -1.1 621,800 + ABCV34_RS02780 0.52 -0.8 621,800 + ABCV34_RS02780 0.52 -1.0 621,801 - ABCV34_RS02780 0.52 -1.8 621,801 - ABCV34_RS02780 0.52 -0.8 621,801 - ABCV34_RS02780 0.52 -0.8 621,988 + ABCV34_RS02780 0.71 -2.9 621,988 + ABCV34_RS02780 0.71 -1.0 621,988 + ABCV34_RS02780 0.71 -3.0 621,988 + ABCV34_RS02780 0.71 -1.3 621,988 + ABCV34_RS02780 0.71 -0.8 621,988 + ABCV34_RS02780 0.71 -0.6 621,988 + ABCV34_RS02780 0.71 -2.4 621,988 + ABCV34_RS02780 0.71 -1.4 621,989 - ABCV34_RS02780 0.71 +0.3 621,989 - ABCV34_RS02780 0.71 -1.5 621,989 - ABCV34_RS02780 0.71 -0.7 621,989 - ABCV34_RS02780 0.71 -1.5 621,989 - ABCV34_RS02780 0.71 -1.3 621,989 - ABCV34_RS02780 0.71 -1.7
Or see this region's nucleotide sequence