Experiment: R2A with Zinc chloride 2560 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18890 and LRK55_RS18895 are separated by 180 nucleotides LRK55_RS18895 and LRK55_RS18900 are separated by 546 nucleotides LRK55_RS18900 and LRK55_RS18905 are separated by 9 nucleotides
LRK55_RS18890: LRK55_RS18890 - DNA-binding protein, at 118,286 to 119,302
_RS18890
LRK55_RS18895: LRK55_RS18895 - PepSY domain-containing protein, at 119,483 to 119,785
_RS18895
LRK55_RS18900: LRK55_RS18900 - S24 family peptidase, at 120,332 to 120,712
_RS18900
LRK55_RS18905: LRK55_RS18905 - translesion DNA synthesis-associated protein ImuA, at 120,722 to 121,387
_RS18905
Position (kb) 119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.632 kb on + strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.633 kb on - strand, within LRK55_RS18890 at 118.761 kb on + strand, within LRK55_RS18890 at 118.761 kb on + strand, within LRK55_RS18890 at 118.761 kb on + strand, within LRK55_RS18890 at 118.761 kb on + strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.762 kb on - strand, within LRK55_RS18890 at 118.813 kb on + strand, within LRK55_RS18890 at 118.813 kb on + strand, within LRK55_RS18890 at 118.814 kb on - strand, within LRK55_RS18890 at 118.814 kb on - strand, within LRK55_RS18890 at 118.814 kb on - strand, within LRK55_RS18890 at 118.861 kb on - strand, within LRK55_RS18890 at 118.861 kb on - strand, within LRK55_RS18890 at 118.861 kb on - strand, within LRK55_RS18890 at 118.897 kb on + strand, within LRK55_RS18890 at 118.898 kb on - strand, within LRK55_RS18890 at 118.899 kb on + strand, within LRK55_RS18890 at 118.899 kb on + strand, within LRK55_RS18890 at 118.899 kb on + strand, within LRK55_RS18890 at 118.899 kb on + strand, within LRK55_RS18890 at 118.900 kb on - strand, within LRK55_RS18890 at 118.900 kb on - strand, within LRK55_RS18890 at 118.900 kb on - strand, within LRK55_RS18890 at 118.900 kb on - strand, within LRK55_RS18890 at 119.094 kb on + strand, within LRK55_RS18890 at 119.094 kb on + strand, within LRK55_RS18890 at 119.095 kb on - strand, within LRK55_RS18890 at 119.095 kb on - strand, within LRK55_RS18890 at 119.095 kb on - strand, within LRK55_RS18890 at 119.095 kb on - strand, within LRK55_RS18890 at 119.095 kb on - strand, within LRK55_RS18890 at 119.110 kb on + strand, within LRK55_RS18890 at 119.239 kb on - strand at 119.300 kb on + strand at 119.301 kb on - strand at 119.301 kb on - strand at 119.318 kb on + strand at 119.318 kb on + strand at 119.318 kb on + strand at 119.318 kb on + strand at 119.319 kb on - strand at 119.319 kb on - strand at 119.319 kb on - strand at 119.319 kb on - strand at 119.449 kb on + strand at 119.449 kb on + strand at 119.449 kb on + strand at 119.449 kb on + strand at 119.450 kb on - strand at 119.450 kb on - strand at 119.484 kb on + strand at 119.484 kb on + strand at 119.484 kb on + strand at 119.485 kb on - strand at 119.485 kb on - strand at 119.485 kb on - strand at 119.538 kb on - strand, within LRK55_RS18895 at 119.554 kb on + strand, within LRK55_RS18895 at 119.554 kb on + strand, within LRK55_RS18895 at 119.554 kb on + strand, within LRK55_RS18895 at 119.555 kb on - strand, within LRK55_RS18895 at 119.555 kb on - strand, within LRK55_RS18895 at 119.555 kb on - strand, within LRK55_RS18895 at 119.555 kb on - strand, within LRK55_RS18895 at 119.583 kb on + strand, within LRK55_RS18895 at 119.584 kb on - strand, within LRK55_RS18895 at 119.584 kb on - strand, within LRK55_RS18895 at 119.584 kb on - strand, within LRK55_RS18895 at 119.584 kb on - strand, within LRK55_RS18895 at 119.662 kb on + strand, within LRK55_RS18895 at 119.662 kb on + strand, within LRK55_RS18895 at 119.662 kb on + strand, within LRK55_RS18895 at 119.714 kb on - strand, within LRK55_RS18895 at 119.714 kb on - strand, within LRK55_RS18895 at 119.785 kb on + strand at 119.785 kb on + strand at 119.785 kb on + strand at 119.785 kb on + strand at 119.786 kb on - strand at 119.786 kb on - strand at 119.786 kb on - strand at 119.786 kb on - strand at 119.786 kb on - strand at 119.799 kb on + strand at 119.870 kb on + strand at 119.870 kb on + strand at 119.870 kb on + strand at 119.870 kb on + strand at 119.870 kb on + strand at 119.871 kb on - strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.881 kb on + strand at 119.882 kb on - strand at 119.882 kb on - strand at 119.882 kb on - strand at 119.882 kb on - strand at 119.882 kb on - strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.885 kb on + strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.886 kb on - strand at 119.889 kb on + strand at 119.889 kb on + strand at 119.889 kb on + strand at 119.889 kb on + strand at 119.890 kb on - strand at 119.890 kb on - strand at 119.890 kb on - strand at 119.946 kb on - strand at 119.946 kb on - strand at 120.048 kb on + strand at 120.048 kb on + strand at 120.048 kb on + strand at 120.049 kb on - strand at 120.055 kb on - strand at 120.068 kb on + strand at 120.069 kb on - strand at 120.089 kb on + strand at 120.090 kb on - strand at 120.096 kb on + strand at 120.096 kb on + strand at 120.102 kb on + strand at 120.102 kb on + strand at 120.102 kb on + strand at 120.103 kb on - strand at 120.103 kb on - strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.106 kb on + strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.107 kb on - strand at 120.144 kb on + strand at 120.144 kb on + strand at 120.144 kb on + strand at 120.145 kb on - strand at 120.145 kb on - strand at 120.260 kb on - strand at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.488 kb on + strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.489 kb on - strand, within LRK55_RS18900 at 120.527 kb on + strand, within LRK55_RS18900 at 120.527 kb on + strand, within LRK55_RS18900 at 120.527 kb on + strand, within LRK55_RS18900 at 120.587 kb on + strand, within LRK55_RS18900 at 120.587 kb on + strand, within LRK55_RS18900 at 120.588 kb on - strand, within LRK55_RS18900 at 120.618 kb on - strand, within LRK55_RS18900 at 120.663 kb on + strand, within LRK55_RS18900 at 120.663 kb on + strand, within LRK55_RS18900 at 120.663 kb on + strand, within LRK55_RS18900 at 120.664 kb on - strand, within LRK55_RS18900 at 120.664 kb on - strand, within LRK55_RS18900
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM remove 118,632 + LRK55_RS18890 0.34 -0.1 118,632 + LRK55_RS18890 0.34 -1.0 118,632 + LRK55_RS18890 0.34 +1.3 118,632 + LRK55_RS18890 0.34 +0.8 118,632 + LRK55_RS18890 0.34 +0.0 118,632 + LRK55_RS18890 0.34 +0.6 118,632 + LRK55_RS18890 0.34 +2.9 118,632 + LRK55_RS18890 0.34 -1.4 118,632 + LRK55_RS18890 0.34 -0.4 118,632 + LRK55_RS18890 0.34 -2.5 118,632 + LRK55_RS18890 0.34 +0.3 118,632 + LRK55_RS18890 0.34 -0.4 118,632 + LRK55_RS18890 0.34 +0.4 118,632 + LRK55_RS18890 0.34 +0.3 118,632 + LRK55_RS18890 0.34 +0.7 118,632 + LRK55_RS18890 0.34 +0.9 118,632 + LRK55_RS18890 0.34 -2.4 118,633 - LRK55_RS18890 0.34 +0.4 118,633 - LRK55_RS18890 0.34 +0.0 118,633 - LRK55_RS18890 0.34 -2.0 118,633 - LRK55_RS18890 0.34 -2.5 118,633 - LRK55_RS18890 0.34 -0.5 118,633 - LRK55_RS18890 0.34 +0.5 118,633 - LRK55_RS18890 0.34 +0.5 118,633 - LRK55_RS18890 0.34 -0.5 118,633 - LRK55_RS18890 0.34 -1.4 118,633 - LRK55_RS18890 0.34 -0.7 118,633 - LRK55_RS18890 0.34 -0.5 118,633 - LRK55_RS18890 0.34 +1.0 118,633 - LRK55_RS18890 0.34 -0.6 118,633 - LRK55_RS18890 0.34 +0.4 118,633 - LRK55_RS18890 0.34 -1.4 118,633 - LRK55_RS18890 0.34 -1.7 118,633 - LRK55_RS18890 0.34 +0.8 118,761 + LRK55_RS18890 0.47 +0.4 118,761 + LRK55_RS18890 0.47 +0.4 118,761 + LRK55_RS18890 0.47 +0.3 118,761 + LRK55_RS18890 0.47 -0.4 118,762 - LRK55_RS18890 0.47 +0.3 118,762 - LRK55_RS18890 0.47 -0.7 118,762 - LRK55_RS18890 0.47 -0.1 118,762 - LRK55_RS18890 0.47 -3.4 118,762 - LRK55_RS18890 0.47 -0.3 118,762 - LRK55_RS18890 0.47 -0.6 118,762 - LRK55_RS18890 0.47 -1.9 118,762 - LRK55_RS18890 0.47 -0.6 118,813 + LRK55_RS18890 0.52 +0.6 118,813 + LRK55_RS18890 0.52 -0.6 118,814 - LRK55_RS18890 0.52 -0.1 118,814 - LRK55_RS18890 0.52 -1.3 118,814 - LRK55_RS18890 0.52 -1.2 118,861 - LRK55_RS18890 0.57 -1.0 118,861 - LRK55_RS18890 0.57 +0.3 118,861 - LRK55_RS18890 0.57 +0.1 118,897 + LRK55_RS18890 0.60 -0.1 118,898 - LRK55_RS18890 0.60 -0.8 118,899 + LRK55_RS18890 0.60 -0.8 118,899 + LRK55_RS18890 0.60 +0.7 118,899 + LRK55_RS18890 0.60 +0.8 118,899 + LRK55_RS18890 0.60 +2.0 118,900 - LRK55_RS18890 0.60 -1.6 118,900 - LRK55_RS18890 0.60 -0.6 118,900 - LRK55_RS18890 0.60 +0.4 118,900 - LRK55_RS18890 0.60 -1.7 119,094 + LRK55_RS18890 0.79 -0.2 119,094 + LRK55_RS18890 0.79 +1.7 119,095 - LRK55_RS18890 0.80 -0.1 119,095 - LRK55_RS18890 0.80 +0.8 119,095 - LRK55_RS18890 0.80 -1.6 119,095 - LRK55_RS18890 0.80 +0.2 119,095 - LRK55_RS18890 0.80 -0.6 119,110 + LRK55_RS18890 0.81 +0.9 119,239 - +0.1 119,300 + +0.0 119,301 - -0.1 119,301 - +0.3 119,318 + -0.3 119,318 + -0.6 119,318 + -0.4 119,318 + -2.4 119,319 - +1.0 119,319 - -0.7 119,319 - +0.7 119,319 - +0.4 119,449 + +0.8 119,449 + -0.3 119,449 + +1.3 119,449 + -0.4 119,450 - +1.9 119,450 - -0.4 119,484 + -1.8 119,484 + +0.4 119,484 + +0.3 119,485 - +0.1 119,485 - +0.3 119,485 - -0.2 119,538 - LRK55_RS18895 0.18 +0.8 119,554 + LRK55_RS18895 0.23 -1.4 119,554 + LRK55_RS18895 0.23 -1.2 119,554 + LRK55_RS18895 0.23 -0.8 119,555 - LRK55_RS18895 0.24 -1.7 119,555 - LRK55_RS18895 0.24 -0.0 119,555 - LRK55_RS18895 0.24 +0.0 119,555 - LRK55_RS18895 0.24 -0.6 119,583 + LRK55_RS18895 0.33 +0.5 119,584 - LRK55_RS18895 0.33 +0.0 119,584 - LRK55_RS18895 0.33 +0.1 119,584 - LRK55_RS18895 0.33 -0.5 119,584 - LRK55_RS18895 0.33 -0.1 119,662 + LRK55_RS18895 0.59 -0.3 119,662 + LRK55_RS18895 0.59 -1.9 119,662 + LRK55_RS18895 0.59 +0.7 119,714 - LRK55_RS18895 0.76 -0.7 119,714 - LRK55_RS18895 0.76 +0.7 119,785 + -1.0 119,785 + +0.1 119,785 + +0.7 119,785 + +0.4 119,786 - +0.4 119,786 - +0.2 119,786 - +0.1 119,786 - -2.4 119,786 - -1.3 119,799 + +0.7 119,870 + -0.6 119,870 + +1.1 119,870 + +1.6 119,870 + +0.0 119,870 + +0.1 119,871 - -0.4 119,881 + +0.9 119,881 + -0.0 119,881 + +1.6 119,881 + +0.9 119,881 + +1.0 119,881 + +0.1 119,881 + +0.2 119,881 + +1.0 119,881 + +0.0 119,882 - +1.9 119,882 - +1.8 119,882 - -0.3 119,882 - -0.4 119,882 - +0.3 119,885 + -0.3 119,885 + -3.2 119,885 + -2.9 119,885 + -2.1 119,885 + +0.0 119,885 + +0.3 119,885 + -0.3 119,885 + -1.6 119,886 - -0.1 119,886 - -1.9 119,886 - -2.2 119,886 - -0.9 119,886 - -1.2 119,886 - +0.4 119,886 - +0.6 119,886 - -0.2 119,886 - +1.0 119,889 + -1.0 119,889 + -0.2 119,889 + +0.1 119,889 + -0.1 119,890 - +0.8 119,890 - -1.3 119,890 - +0.1 119,946 - -0.4 119,946 - -0.8 120,048 + -0.3 120,048 + +1.9 120,048 + +0.1 120,049 - +0.9 120,055 - -1.9 120,068 + +2.3 120,069 - -0.6 120,089 + -0.6 120,090 - +0.8 120,096 + -2.7 120,096 + -0.6 120,102 + +0.4 120,102 + +0.7 120,102 + +2.6 120,103 - -0.7 120,103 - -0.2 120,106 + -1.2 120,106 + -0.9 120,106 + +1.4 120,106 + +1.5 120,106 + +1.4 120,106 + +0.0 120,106 + +0.3 120,106 + +1.0 120,106 + -2.2 120,106 + -0.5 120,107 - +0.1 120,107 - +0.6 120,107 - +0.9 120,107 - +0.5 120,107 - +0.1 120,107 - +1.9 120,107 - +0.4 120,107 - -2.1 120,144 + +0.9 120,144 + +0.1 120,144 + -1.9 120,145 - -0.8 120,145 - +0.1 120,260 - -0.1 120,488 + LRK55_RS18900 0.41 +0.3 120,488 + LRK55_RS18900 0.41 -2.2 120,488 + LRK55_RS18900 0.41 -1.4 120,488 + LRK55_RS18900 0.41 -0.7 120,488 + LRK55_RS18900 0.41 +0.5 120,488 + LRK55_RS18900 0.41 -1.0 120,488 + LRK55_RS18900 0.41 +1.5 120,488 + LRK55_RS18900 0.41 +1.2 120,488 + LRK55_RS18900 0.41 +0.4 120,488 + LRK55_RS18900 0.41 +0.3 120,488 + LRK55_RS18900 0.41 +1.9 120,488 + LRK55_RS18900 0.41 -1.4 120,489 - LRK55_RS18900 0.41 +0.7 120,489 - LRK55_RS18900 0.41 +1.6 120,489 - LRK55_RS18900 0.41 -1.7 120,489 - LRK55_RS18900 0.41 -2.5 120,489 - LRK55_RS18900 0.41 +1.6 120,489 - LRK55_RS18900 0.41 +1.2 120,489 - LRK55_RS18900 0.41 -1.2 120,489 - LRK55_RS18900 0.41 +0.3 120,489 - LRK55_RS18900 0.41 -0.7 120,489 - LRK55_RS18900 0.41 -0.2 120,489 - LRK55_RS18900 0.41 +1.0 120,489 - LRK55_RS18900 0.41 -0.1 120,527 + LRK55_RS18900 0.51 +0.6 120,527 + LRK55_RS18900 0.51 +0.6 120,527 + LRK55_RS18900 0.51 -0.1 120,587 + LRK55_RS18900 0.67 -2.7 120,587 + LRK55_RS18900 0.67 -1.0 120,588 - LRK55_RS18900 0.67 -1.4 120,618 - LRK55_RS18900 0.75 -0.6 120,663 + LRK55_RS18900 0.87 +0.2 120,663 + LRK55_RS18900 0.87 -0.1 120,663 + LRK55_RS18900 0.87 +0.9 120,664 - LRK55_RS18900 0.87 +1.9 120,664 - LRK55_RS18900 0.87 +0.3
Or see this region's nucleotide sequence