Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18870

Experiment: R2A with Zinc chloride 2560 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc chloride 2560 uM
114,825	+		LRK55_RS18865	0.55	-1.7
114,826	-		LRK55_RS18865	0.55	+0.0
114,866	+		LRK55_RS18865	0.57	+0.6
114,866	+		LRK55_RS18865	0.57	-0.5
114,866	+		LRK55_RS18865	0.57	-0.7
114,866	+		LRK55_RS18865	0.57	+0.1
114,866	+		LRK55_RS18865	0.57	-0.8
114,866	+		LRK55_RS18865	0.57	-0.9
114,866	+		LRK55_RS18865	0.57	+1.8
114,866	+		LRK55_RS18865	0.57	+0.3
114,867	-		LRK55_RS18865	0.57	+0.3
114,867	-		LRK55_RS18865	0.57	-0.1
114,867	-		LRK55_RS18865	0.57	-0.5
114,867	-		LRK55_RS18865	0.57	+0.4
114,867	-		LRK55_RS18865	0.57	-1.6
114,867	-		LRK55_RS18865	0.57	-1.7
114,872	+		LRK55_RS18865	0.57	-0.2
114,872	+		LRK55_RS18865	0.57	+0.1
114,872	+		LRK55_RS18865	0.57	+0.9
114,872	+		LRK55_RS18865	0.57	-0.6
114,872	+		LRK55_RS18865	0.57	+1.1
114,872	+		LRK55_RS18865	0.57	-2.3
114,872	+		LRK55_RS18865	0.57	-1.6
114,873	-		LRK55_RS18865	0.57	-1.9
114,873	-		LRK55_RS18865	0.57	+0.9
114,873	-		LRK55_RS18865	0.57	+0.9
114,873	-		LRK55_RS18865	0.57	-2.0
114,873	-		LRK55_RS18865	0.57	-2.5
114,873	-		LRK55_RS18865	0.57	+1.4
114,873	-		LRK55_RS18865	0.57	-1.7
114,873	-		LRK55_RS18865	0.57	+0.8
114,873	-		LRK55_RS18865	0.57	+0.2
114,873	-		LRK55_RS18865	0.57	-0.6
114,873	-		LRK55_RS18865	0.57	+0.1
114,873	-		LRK55_RS18865	0.57	-1.2
114,879	-		LRK55_RS18865	0.58	+0.0
115,013	+		LRK55_RS18865	0.65	-1.2
115,013	+		LRK55_RS18865	0.65	-0.1
115,016	+		LRK55_RS18865	0.65	-0.4
115,016	+		LRK55_RS18865	0.65	-0.4
115,016	+		LRK55_RS18865	0.65	+0.6
115,032	+		LRK55_RS18865	0.66	-0.1
115,032	+		LRK55_RS18865	0.66	-0.2
115,091	+		LRK55_RS18865	0.70	-2.1
115,091	+		LRK55_RS18865	0.70	+0.1
115,091	+		LRK55_RS18865	0.70	+0.6
115,148	+		LRK55_RS18865	0.73	+0.5
115,148	+		LRK55_RS18865	0.73	+0.5
115,187	+		LRK55_RS18865	0.75	-0.7
115,187	+		LRK55_RS18865	0.75	-0.0
115,187	+		LRK55_RS18865	0.75	+1.2
115,187	+		LRK55_RS18865	0.75	+0.8
115,187	+		LRK55_RS18865	0.75	-0.3
115,187	+		LRK55_RS18865	0.75	+1.2
115,188	-		LRK55_RS18865	0.75	+0.1
115,193	+		LRK55_RS18865	0.75	+0.1
115,193	+		LRK55_RS18865	0.75	-0.0
115,193	+		LRK55_RS18865	0.75	-0.0
115,193	+		LRK55_RS18865	0.75	-0.1
115,193	+		LRK55_RS18865	0.75	-2.4
115,193	+		LRK55_RS18865	0.75	-0.4
115,193	+		LRK55_RS18865	0.75	-0.6
115,194	-		LRK55_RS18865	0.75	-0.0
115,194	-		LRK55_RS18865	0.75	+0.6
115,194	-		LRK55_RS18865	0.75	-0.5
115,194	-		LRK55_RS18865	0.75	-2.0
115,194	-		LRK55_RS18865	0.75	+0.4
115,194	-		LRK55_RS18865	0.75	-0.4
115,194	-		LRK55_RS18865	0.75	-0.4
115,194	-		LRK55_RS18865	0.75	-0.5
115,194	-		LRK55_RS18865	0.75	-0.3
115,223	+		LRK55_RS18865	0.77	-0.5
115,223	+		LRK55_RS18865	0.77	+0.3
115,224	-		LRK55_RS18865	0.77	+0.3
115,224	-		LRK55_RS18865	0.77	-0.2
115,224	-		LRK55_RS18865	0.77	-1.5
115,436	+		LRK55_RS18865	0.89	+0.0
115,436	+		LRK55_RS18865	0.89	-0.2
115,436	+		LRK55_RS18865	0.89	+0.4
115,436	+		LRK55_RS18865	0.89	-0.3
115,436	+		LRK55_RS18865	0.89	+1.0
115,436	+		LRK55_RS18865	0.89	+0.2
115,437	-		LRK55_RS18865	0.89	+1.0
115,437	-		LRK55_RS18865	0.89	-0.5
115,437	-		LRK55_RS18865	0.89	-0.9
115,437	-		LRK55_RS18865	0.89	-0.2
115,458	+				+0.6
115,775	+				-0.6
115,892	+		LRK55_RS18870	0.37	+0.5
115,892	+		LRK55_RS18870	0.37	-0.0
115,892	+		LRK55_RS18870	0.37	+0.9
115,892	+		LRK55_RS18870	0.37	-0.2
115,893	-		LRK55_RS18870	0.37	-1.8
115,893	-		LRK55_RS18870	0.37	+0.6
115,893	-		LRK55_RS18870	0.37	-0.9
115,893	-		LRK55_RS18870	0.37	-0.3
115,893	-		LRK55_RS18870	0.37	+1.5
115,893	-		LRK55_RS18870	0.37	-0.2
115,893	-		LRK55_RS18870	0.37	-0.4
115,893	-		LRK55_RS18870	0.37	-0.8
115,968	+		LRK55_RS18870	0.55	-0.6
115,968	+		LRK55_RS18870	0.55	-1.7
115,968	+		LRK55_RS18870	0.55	-0.3
115,968	+		LRK55_RS18870	0.55	-0.5
115,968	+		LRK55_RS18870	0.55	-2.0
115,968	+		LRK55_RS18870	0.55	+0.6
115,969	-		LRK55_RS18870	0.55	-1.0
115,969	-		LRK55_RS18870	0.55	+0.3
115,969	-		LRK55_RS18870	0.55	-0.7
116,150	+				-0.2
116,150	+				+0.3
116,151	-				+0.4
116,151	-				+0.9
116,151	-				-1.7
116,151	-				-1.7
116,162	-				-1.9
116,162	-				+0.0
116,162	-				+0.5
116,162	-				+0.0
116,229	+				+0.5
116,229	+				-0.9
116,229	+				+1.1
116,229	+				+0.0
116,229	+				-0.7
116,230	-				+0.3
116,230	-				+0.4
116,230	-				+0.1
116,230	-				-0.2
116,230	-				+0.0
116,230	-				+0.1
116,230	-				-0.3
116,301	+		LRK55_RS18875	0.28	+2.3
116,301	+		LRK55_RS18875	0.28	-0.5
116,301	+		LRK55_RS18875	0.28	-0.2
116,301	+		LRK55_RS18875	0.28	-0.7
116,303	-		LRK55_RS18875	0.28	-1.4
116,373	+		LRK55_RS18875	0.50	-0.6
116,373	+		LRK55_RS18875	0.50	+0.1
116,373	+		LRK55_RS18875	0.50	-2.7
116,374	-		LRK55_RS18875	0.50	-0.3
116,374	-		LRK55_RS18875	0.50	-0.7
116,374	-		LRK55_RS18875	0.50	+0.1
116,374	-		LRK55_RS18875	0.50	-0.7
116,374	-		LRK55_RS18875	0.50	-0.1
116,374	-		LRK55_RS18875	0.50	-0.2
116,374	-		LRK55_RS18875	0.50	-1.5
116,394	+		LRK55_RS18875	0.56	+0.5
116,394	+		LRK55_RS18875	0.56	-0.4
116,394	+		LRK55_RS18875	0.56	+0.8
116,395	-		LRK55_RS18875	0.56	+1.1
116,395	-		LRK55_RS18875	0.56	+0.0
116,395	-		LRK55_RS18875	0.56	+0.3
116,395	-		LRK55_RS18875	0.56	+1.0
116,476	+		LRK55_RS18875	0.81	-0.9
116,477	-		LRK55_RS18875	0.81	-0.5
116,477	-		LRK55_RS18875	0.81	+0.3
116,477	-		LRK55_RS18875	0.81	-0.2
116,477	-		LRK55_RS18875	0.81	+0.8
116,516	-				+0.4
116,516	-				-0.7
116,532	+				-0.4
116,532	+				-1.3
116,532	+				+0.6
116,532	+				+0.1
116,532	+				+0.3
116,533	-				+1.1
116,533	-				-0.8
116,533	-				-0.4
116,533	-				+0.2
116,533	-				+0.5
116,533	-				-0.6
116,533	-				-0.4
116,536	-				-0.1
116,538	+				-0.1
116,539	-				-1.3
116,539	-				-3.2
116,539	-				-1.0
116,539	-				+0.9
116,539	-				+0.6
116,598	+				+0.4
116,624	-				-1.2
116,624	-				+0.8
116,624	-				+0.5
116,624	-				-0.7
116,624	-				+0.3
116,652	-				-0.3
116,652	-				+0.0
116,652	-				-0.5
116,652	-				-0.7
116,652	-				-1.3
116,652	-				+0.0
116,663	+				-0.5
116,663	+				+0.4
116,664	-				-2.7
116,664	-				-2.8
116,692	+		LRK55_RS18880	0.14	+0.4
116,692	+		LRK55_RS18880	0.14	-0.6
116,692	+		LRK55_RS18880	0.14	+1.3
116,693	-		LRK55_RS18880	0.14	-1.0
116,693	-		LRK55_RS18880	0.14	-2.7
116,693	-		LRK55_RS18880	0.14	-0.8
116,728	+		LRK55_RS18880	0.25	-1.7
116,728	+		LRK55_RS18880	0.25	-1.9
116,728	+		LRK55_RS18880	0.25	-0.3
116,728	+		LRK55_RS18880	0.25	-0.7
116,728	+		LRK55_RS18880	0.25	-0.8
116,729	-		LRK55_RS18880	0.26	+1.8
116,757	+		LRK55_RS18880	0.35	+1.7
116,758	-		LRK55_RS18880	0.35	-1.4
116,760	+		LRK55_RS18880	0.36	+0.5
116,760	+		LRK55_RS18880	0.36	-1.0
116,760	+		LRK55_RS18880	0.36	-0.4
116,760	+		LRK55_RS18880	0.36	-0.4
116,809	+		LRK55_RS18880	0.51	-0.0
116,809	+		LRK55_RS18880	0.51	-0.5
116,836	+		LRK55_RS18880	0.60	+1.0
116,836	+		LRK55_RS18880	0.60	+0.3
116,836	+		LRK55_RS18880	0.60	-2.1
116,836	+		LRK55_RS18880	0.60	+0.2
116,836	+		LRK55_RS18880	0.60	+0.6
116,836	+		LRK55_RS18880	0.60	-0.4
116,836	+		LRK55_RS18880	0.60	+0.3
116,837	-		LRK55_RS18880	0.61	+0.4
116,837	-		LRK55_RS18880	0.61	-2.4
116,837	-		LRK55_RS18880	0.61	+0.4
116,858	-		LRK55_RS18880	0.67	+0.6
116,859	-		LRK55_RS18880	0.68	+0.0
116,859	-		LRK55_RS18880	0.68	+0.1
116,859	-		LRK55_RS18880	0.68	+0.4
116,859	-		LRK55_RS18880	0.68	-0.3
116,859	-		LRK55_RS18880	0.68	+0.9
116,859	-		LRK55_RS18880	0.68	-1.2
116,859	-		LRK55_RS18880	0.68	-0.9
116,859	-		LRK55_RS18880	0.68	-0.3
116,859	-		LRK55_RS18880	0.68	+0.3
116,859	-		LRK55_RS18880	0.68	+0.2
116,859	-		LRK55_RS18880	0.68	+0.0
116,859	-		LRK55_RS18880	0.68	-0.4
116,859	-		LRK55_RS18880	0.68	+1.0
116,859	-		LRK55_RS18880	0.68	-2.4
116,859	-		LRK55_RS18880	0.68	+0.4
116,859	-		LRK55_RS18880	0.68	-0.9
116,859	-		LRK55_RS18880	0.68	-1.8
116,859	-		LRK55_RS18880	0.68	-0.2
116,859	-		LRK55_RS18880	0.68	+0.9
116,859	-		LRK55_RS18880	0.68	-0.6
116,859	-		LRK55_RS18880	0.68	-0.8
116,859	-		LRK55_RS18880	0.68	-0.3
116,859	-		LRK55_RS18880	0.68	-0.4
116,859	-		LRK55_RS18880	0.68	-0.1
116,859	-		LRK55_RS18880	0.68	-1.2
116,859	-		LRK55_RS18880	0.68	+0.6
116,859	-		LRK55_RS18880	0.68	+0.3
116,859	-		LRK55_RS18880	0.68	-0.2
116,859	-		LRK55_RS18880	0.68	-0.1
116,859	-		LRK55_RS18880	0.68	-2.1
116,859	-		LRK55_RS18880	0.68	+0.3
116,863	-		LRK55_RS18880	0.69	-0.3
116,863	-		LRK55_RS18880	0.69	-2.0
116,863	-		LRK55_RS18880	0.69	-1.4
116,863	-		LRK55_RS18880	0.69	+0.6
116,863	-		LRK55_RS18880	0.69	-1.2
116,863	-		LRK55_RS18880	0.69	-0.2
116,863	-		LRK55_RS18880	0.69	-0.5
116,863	-		LRK55_RS18880	0.69	-0.5
116,863	-		LRK55_RS18880	0.69	+0.1
116,863	-		LRK55_RS18880	0.69	+0.1
116,863	-		LRK55_RS18880	0.69	-1.6
116,863	-		LRK55_RS18880	0.69	+0.8
116,863	-		LRK55_RS18880	0.69	+0.3
116,863	-		LRK55_RS18880	0.69	-0.8
116,863	-		LRK55_RS18880	0.69	+0.6
116,863	-		LRK55_RS18880	0.69	-0.1
116,863	-		LRK55_RS18880	0.69	-0.1
117,040	+				+0.6
117,040	+				-0.6
117,040	+				-0.9
117,040	+				+0.4
117,040	+				+1.0
117,040	+				+0.9
117,040	+				+0.8
117,041	-				-1.0
117,041	-				+0.3
117,041	-				+1.8
117,041	-				-1.2
117,041	-				-1.2
117,041	-				-1.3
117,041	-				-0.7
117,059	+				+1.4
117,059	+				-2.2
117,059	+				+1.8
117,060	-				+0.2
117,060	-				-0.4
117,060	-				+1.0
117,060	-				+0.1
117,131	+		LRK55_RS18885	0.15	+0.4
117,131	+		LRK55_RS18885	0.15	+2.1
117,131	+		LRK55_RS18885	0.15	+1.3
117,131	+		LRK55_RS18885	0.15	+0.5
117,131	+		LRK55_RS18885	0.15	-1.0
117,131	+		LRK55_RS18885	0.15	-0.6
117,131	+		LRK55_RS18885	0.15	+0.4
117,131	+		LRK55_RS18885	0.15	+2.2
117,132	-		LRK55_RS18885	0.15	-2.7
117,132	-		LRK55_RS18885	0.15	-2.0
117,132	-		LRK55_RS18885	0.15	+0.0
117,132	-		LRK55_RS18885	0.15	+0.5
117,132	-		LRK55_RS18885	0.15	-0.6
117,132	-		LRK55_RS18885	0.15	-0.1
117,132	-		LRK55_RS18885	0.15	+0.1