Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18820

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS18810 and LRK55_RS18815 are separated by 65 nucleotidesLRK55_RS18815 and LRK55_RS18820 are separated by 3 nucleotidesLRK55_RS18820 and LRK55_RS18825 overlap by 4 nucleotides LRK55_RS18810: LRK55_RS18810 - DUF305 domain-containing protein, at 99,078 to 99,542 _RS18810 LRK55_RS18815: LRK55_RS18815 - copper-binding protein, at 99,608 to 99,961 _RS18815 LRK55_RS18820: LRK55_RS18820 - efflux RND transporter permease subunit, at 99,965 to 103,141 _RS18820 LRK55_RS18825: LRK55_RS18825 - efflux RND transporter periplasmic adaptor subunit, at 103,138 to 104,430 _RS18825 Position (kb) 99 100 101 102 103 104Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 99.004 kb on + strandat 99.046 kb on + strandat 99.148 kb on - strand, within LRK55_RS18810at 99.261 kb on + strand, within LRK55_RS18810at 99.262 kb on - strand, within LRK55_RS18810at 99.262 kb on - strand, within LRK55_RS18810at 99.262 kb on - strand, within LRK55_RS18810at 99.262 kb on - strand, within LRK55_RS18810at 99.328 kb on - strand, within LRK55_RS18810at 99.328 kb on - strand, within LRK55_RS18810at 99.464 kb on + strand, within LRK55_RS18810at 99.465 kb on - strand, within LRK55_RS18810at 99.465 kb on - strand, within LRK55_RS18810at 99.540 kb on + strandat 99.540 kb on + strandat 99.931 kb on + strandat 100.015 kb on + strandat 100.056 kb on - strandat 100.302 kb on + strand, within LRK55_RS18820at 100.547 kb on + strand, within LRK55_RS18820at 100.547 kb on + strand, within LRK55_RS18820at 100.547 kb on + strand, within LRK55_RS18820at 100.548 kb on - strand, within LRK55_RS18820at 100.548 kb on - strand, within LRK55_RS18820at 100.552 kb on - strand, within LRK55_RS18820at 100.668 kb on + strand, within LRK55_RS18820at 100.668 kb on + strand, within LRK55_RS18820at 100.669 kb on - strand, within LRK55_RS18820at 100.669 kb on - strand, within LRK55_RS18820at 100.669 kb on - strand, within LRK55_RS18820at 100.669 kb on - strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.674 kb on + strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.675 kb on - strand, within LRK55_RS18820at 100.732 kb on + strand, within LRK55_RS18820at 100.936 kb on - strand, within LRK55_RS18820at 100.975 kb on - strand, within LRK55_RS18820at 101.875 kb on + strand, within LRK55_RS18820at 101.875 kb on + strand, within LRK55_RS18820at 102.008 kb on - strand, within LRK55_RS18820at 102.168 kb on + strand, within LRK55_RS18820at 102.168 kb on + strand, within LRK55_RS18820at 102.168 kb on + strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.169 kb on - strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.172 kb on + strand, within LRK55_RS18820at 102.173 kb on - strand, within LRK55_RS18820at 102.173 kb on - strand, within LRK55_RS18820at 102.377 kb on + strand, within LRK55_RS18820at 102.377 kb on + strand, within LRK55_RS18820at 102.674 kb on + strand, within LRK55_RS18820at 102.675 kb on - strand, within LRK55_RS18820at 102.804 kb on + strand, within LRK55_RS18820at 102.832 kb on - strandat 102.867 kb on + strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.868 kb on - strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.896 kb on + strandat 102.897 kb on - strandat 102.897 kb on - strandat 102.963 kb on - strandat 102.963 kb on - strandat 103.094 kb on + strandat 103.094 kb on + strandat 103.095 kb on - strandat 103.277 kb on - strand, within LRK55_RS18825at 103.277 kb on - strand, within LRK55_RS18825at 103.277 kb on - strand, within LRK55_RS18825at 103.315 kb on - strand, within LRK55_RS18825at 103.338 kb on + strand, within LRK55_RS18825at 103.514 kb on - strand, within LRK55_RS18825at 103.916 kb on + strand, within LRK55_RS18825at 103.917 kb on - strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.988 kb on + strand, within LRK55_RS18825at 103.989 kb on - strand, within LRK55_RS18825

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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99,004 + -0.1
99,046 + -0.7
99,148 - LRK55_RS18810 0.15 +0.1
99,261 + LRK55_RS18810 0.39 +0.9
99,262 - LRK55_RS18810 0.40 -0.3
99,262 - LRK55_RS18810 0.40 +0.1
99,262 - LRK55_RS18810 0.40 -0.0
99,262 - LRK55_RS18810 0.40 -1.5
99,328 - LRK55_RS18810 0.54 -2.2
99,328 - LRK55_RS18810 0.54 -0.0
99,464 + LRK55_RS18810 0.83 +0.2
99,465 - LRK55_RS18810 0.83 -1.8
99,465 - LRK55_RS18810 0.83 -0.8
99,540 + +0.5
99,540 + +0.2
99,931 + -1.3
100,015 + +0.4
100,056 - +0.6
100,302 + LRK55_RS18820 0.11 +0.2
100,547 + LRK55_RS18820 0.18 +0.2
100,547 + LRK55_RS18820 0.18 +0.0
100,547 + LRK55_RS18820 0.18 -0.9
100,548 - LRK55_RS18820 0.18 +0.2
100,548 - LRK55_RS18820 0.18 +0.2
100,552 - LRK55_RS18820 0.18 -0.4
100,668 + LRK55_RS18820 0.22 -0.3
100,668 + LRK55_RS18820 0.22 -0.6
100,669 - LRK55_RS18820 0.22 -0.7
100,669 - LRK55_RS18820 0.22 +2.0
100,669 - LRK55_RS18820 0.22 -1.1
100,669 - LRK55_RS18820 0.22 -0.6
100,674 + LRK55_RS18820 0.22 -2.9
100,674 + LRK55_RS18820 0.22 -2.0
100,674 + LRK55_RS18820 0.22 +0.3
100,674 + LRK55_RS18820 0.22 +0.5
100,674 + LRK55_RS18820 0.22 -1.3
100,674 + LRK55_RS18820 0.22 -1.0
100,674 + LRK55_RS18820 0.22 -0.3
100,674 + LRK55_RS18820 0.22 +0.5
100,674 + LRK55_RS18820 0.22 -1.8
100,674 + LRK55_RS18820 0.22 +1.1
100,675 - LRK55_RS18820 0.22 -0.4
100,675 - LRK55_RS18820 0.22 +0.2
100,675 - LRK55_RS18820 0.22 -2.2
100,675 - LRK55_RS18820 0.22 -4.0
100,675 - LRK55_RS18820 0.22 -3.4
100,675 - LRK55_RS18820 0.22 -1.4
100,675 - LRK55_RS18820 0.22 -2.5
100,732 + LRK55_RS18820 0.24 +0.3
100,936 - LRK55_RS18820 0.31 +0.3
100,975 - LRK55_RS18820 0.32 -1.3
101,875 + LRK55_RS18820 0.60 -0.1
101,875 + LRK55_RS18820 0.60 +0.1
102,008 - LRK55_RS18820 0.64 +0.6
102,168 + LRK55_RS18820 0.69 -0.5
102,168 + LRK55_RS18820 0.69 -0.7
102,168 + LRK55_RS18820 0.69 +1.4
102,169 - LRK55_RS18820 0.69 -0.1
102,169 - LRK55_RS18820 0.69 +0.9
102,169 - LRK55_RS18820 0.69 -3.3
102,172 + LRK55_RS18820 0.69 +0.9
102,172 + LRK55_RS18820 0.69 +1.3
102,172 + LRK55_RS18820 0.69 -0.1
102,172 + LRK55_RS18820 0.69 +0.1
102,173 - LRK55_RS18820 0.69 -0.6
102,173 - LRK55_RS18820 0.69 +0.6
102,377 + LRK55_RS18820 0.76 +0.5
102,377 + LRK55_RS18820 0.76 +0.6
102,674 + LRK55_RS18820 0.85 -0.7
102,675 - LRK55_RS18820 0.85 -0.2
102,804 + LRK55_RS18820 0.89 +0.5
102,832 - +0.2
102,867 + -0.6
102,868 - +0.9
102,868 - -0.8
102,868 - +0.6
102,868 - +1.3
102,868 - -0.0
102,896 + -0.2
102,896 + +1.0
102,896 + -1.0
102,896 + +1.0
102,897 - -1.2
102,897 - +1.3
102,963 - -0.4
102,963 - -1.0
103,094 + +1.1
103,094 + -0.7
103,095 - +0.4
103,277 - LRK55_RS18825 0.11 -1.2
103,277 - LRK55_RS18825 0.11 +0.2
103,277 - LRK55_RS18825 0.11 +0.3
103,315 - LRK55_RS18825 0.14 +0.4
103,338 + LRK55_RS18825 0.15 -2.5
103,514 - LRK55_RS18825 0.29 +0.5
103,916 + LRK55_RS18825 0.60 +0.4
103,917 - LRK55_RS18825 0.60 -0.3
103,988 + LRK55_RS18825 0.66 -0.4
103,988 + LRK55_RS18825 0.66 +0.7
103,988 + LRK55_RS18825 0.66 +0.7
103,988 + LRK55_RS18825 0.66 -1.4
103,989 - LRK55_RS18825 0.66 -2.2

Or see this region's nucleotide sequence