Experiment: R2A with Zinc chloride 2560 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18545 and LRK55_RS18550 overlap by 1 nucleotides LRK55_RS18550 and LRK55_RS18555 are separated by 229 nucleotides LRK55_RS18555 and LRK55_RS18560 are separated by 12 nucleotides
LRK55_RS18545: LRK55_RS18545 - AAA family ATPase, at 42,533 to 43,639
_RS18545
LRK55_RS18550: LRK55_RS18550 - hypothetical protein, at 43,639 to 44,295
_RS18550
LRK55_RS18555: LRK55_RS18555 - DUF3150 domain-containing protein, at 44,525 to 45,535
_RS18555
LRK55_RS18560: LRK55_RS18560 - VWA domain-containing protein, at 45,548 to 47,467
_RS18560
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 43.538 kb on + strand at 43.556 kb on + strand at 43.604 kb on + strand at 43.604 kb on + strand at 43.604 kb on + strand at 43.604 kb on + strand at 43.604 kb on + strand at 43.605 kb on - strand at 43.651 kb on + strand at 43.651 kb on + strand at 43.651 kb on + strand at 43.651 kb on + strand at 43.651 kb on + strand at 43.652 kb on - strand at 43.831 kb on + strand, within LRK55_RS18550 at 43.831 kb on + strand, within LRK55_RS18550 at 43.831 kb on + strand, within LRK55_RS18550 at 43.831 kb on + strand, within LRK55_RS18550 at 43.928 kb on + strand, within LRK55_RS18550 at 44.062 kb on + strand, within LRK55_RS18550 at 44.062 kb on + strand, within LRK55_RS18550 at 44.063 kb on - strand, within LRK55_RS18550 at 44.212 kb on + strand, within LRK55_RS18550 at 44.212 kb on + strand, within LRK55_RS18550 at 44.212 kb on + strand, within LRK55_RS18550 at 44.213 kb on - strand, within LRK55_RS18550 at 44.268 kb on + strand at 44.269 kb on - strand at 44.437 kb on + strand at 44.437 kb on + strand at 44.437 kb on + strand at 44.438 kb on - strand at 44.438 kb on - strand at 44.605 kb on + strand at 44.881 kb on - strand, within LRK55_RS18555 at 44.900 kb on + strand, within LRK55_RS18555 at 44.900 kb on + strand, within LRK55_RS18555 at 44.921 kb on + strand, within LRK55_RS18555 at 44.922 kb on - strand, within LRK55_RS18555 at 44.922 kb on - strand, within LRK55_RS18555 at 45.231 kb on + strand, within LRK55_RS18555 at 45.231 kb on + strand, within LRK55_RS18555 at 45.231 kb on + strand, within LRK55_RS18555 at 45.232 kb on - strand, within LRK55_RS18555 at 45.308 kb on + strand, within LRK55_RS18555 at 45.308 kb on + strand, within LRK55_RS18555 at 45.308 kb on + strand, within LRK55_RS18555 at 45.308 kb on + strand, within LRK55_RS18555 at 45.309 kb on - strand, within LRK55_RS18555 at 45.309 kb on - strand, within LRK55_RS18555 at 45.309 kb on - strand, within LRK55_RS18555 at 45.309 kb on - strand, within LRK55_RS18555 at 45.386 kb on + strand, within LRK55_RS18555 at 45.387 kb on - strand, within LRK55_RS18555 at 45.387 kb on - strand, within LRK55_RS18555 at 45.387 kb on - strand, within LRK55_RS18555 at 45.544 kb on + strand at 45.544 kb on + strand at 45.545 kb on - strand at 45.545 kb on - strand at 45.545 kb on - strand at 45.746 kb on + strand, within LRK55_RS18560 at 45.818 kb on + strand, within LRK55_RS18560 at 45.981 kb on - strand, within LRK55_RS18560 at 45.981 kb on - strand, within LRK55_RS18560 at 45.981 kb on - strand, within LRK55_RS18560 at 46.022 kb on + strand, within LRK55_RS18560 at 46.022 kb on + strand, within LRK55_RS18560 at 46.023 kb on - strand, within LRK55_RS18560 at 46.023 kb on - strand, within LRK55_RS18560 at 46.070 kb on + strand, within LRK55_RS18560 at 46.097 kb on + strand, within LRK55_RS18560 at 46.098 kb on - strand, within LRK55_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM remove 43,538 + +2.3 43,556 + -0.0 43,604 + +0.1 43,604 + +0.4 43,604 + +0.4 43,604 + -0.9 43,604 + -0.7 43,605 - -0.0 43,651 + -0.0 43,651 + -0.4 43,651 + -1.2 43,651 + +0.9 43,651 + +1.2 43,652 - +0.0 43,831 + LRK55_RS18550 0.29 -1.0 43,831 + LRK55_RS18550 0.29 +0.0 43,831 + LRK55_RS18550 0.29 -0.0 43,831 + LRK55_RS18550 0.29 +0.6 43,928 + LRK55_RS18550 0.44 -1.0 44,062 + LRK55_RS18550 0.64 +0.1 44,062 + LRK55_RS18550 0.64 +0.9 44,063 - LRK55_RS18550 0.65 +0.7 44,212 + LRK55_RS18550 0.87 +1.7 44,212 + LRK55_RS18550 0.87 +0.9 44,212 + LRK55_RS18550 0.87 +1.4 44,213 - LRK55_RS18550 0.87 +1.6 44,268 + -0.7 44,269 - +2.0 44,437 + -0.9 44,437 + +0.5 44,437 + -0.4 44,438 - +1.4 44,438 - -0.0 44,605 + +1.9 44,881 - LRK55_RS18555 0.35 -0.8 44,900 + LRK55_RS18555 0.37 +0.3 44,900 + LRK55_RS18555 0.37 +0.0 44,921 + LRK55_RS18555 0.39 +0.6 44,922 - LRK55_RS18555 0.39 -0.1 44,922 - LRK55_RS18555 0.39 +0.3 45,231 + LRK55_RS18555 0.70 -1.9 45,231 + LRK55_RS18555 0.70 -2.0 45,231 + LRK55_RS18555 0.70 -1.5 45,232 - LRK55_RS18555 0.70 +0.3 45,308 + LRK55_RS18555 0.77 -0.5 45,308 + LRK55_RS18555 0.77 -0.4 45,308 + LRK55_RS18555 0.77 +0.3 45,308 + LRK55_RS18555 0.77 +0.8 45,309 - LRK55_RS18555 0.78 +0.2 45,309 - LRK55_RS18555 0.78 +0.9 45,309 - LRK55_RS18555 0.78 +0.4 45,309 - LRK55_RS18555 0.78 +0.2 45,386 + LRK55_RS18555 0.85 +0.4 45,387 - LRK55_RS18555 0.85 -0.7 45,387 - LRK55_RS18555 0.85 +0.8 45,387 - LRK55_RS18555 0.85 +0.5 45,544 + +0.3 45,544 + +1.8 45,545 - +1.2 45,545 - +0.4 45,545 - -0.0 45,746 + LRK55_RS18560 0.10 +0.7 45,818 + LRK55_RS18560 0.14 -1.7 45,981 - LRK55_RS18560 0.23 +0.7 45,981 - LRK55_RS18560 0.23 -0.3 45,981 - LRK55_RS18560 0.23 +0.8 46,022 + LRK55_RS18560 0.25 +0.0 46,022 + LRK55_RS18560 0.25 +0.8 46,023 - LRK55_RS18560 0.25 +0.5 46,023 - LRK55_RS18560 0.25 +0.3 46,070 + LRK55_RS18560 0.27 -0.3 46,097 + LRK55_RS18560 0.29 +0.9 46,098 - LRK55_RS18560 0.29 +3.4
Or see this region's nucleotide sequence