Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05590

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05580 and LRK55_RS05585 are separated by 98 nucleotidesLRK55_RS05585 and LRK55_RS05590 are separated by 35 nucleotidesLRK55_RS05590 and LRK55_RS05595 are separated by 100 nucleotides LRK55_RS05580: LRK55_RS05580 - NnrS family protein, at 1,209,126 to 1,210,376 _RS05580 LRK55_RS05585: LRK55_RS05585 - helix-turn-helix domain-containing protein, at 1,210,475 to 1,211,236 _RS05585 LRK55_RS05590: LRK55_RS05590 - oxygen-independent coproporphyrinogen III oxidase, at 1,211,272 to 1,212,672 _RS05590 LRK55_RS05595: LRK55_RS05595 - fumarylacetoacetate hydrolase family protein, at 1,212,773 to 1,213,759 _RS05595 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1210.421 kb on + strandat 1210.422 kb on - strandat 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.617 kb on + strand, within LRK55_RS05585at 1210.618 kb on - strand, within LRK55_RS05585at 1210.618 kb on - strand, within LRK55_RS05585at 1210.618 kb on - strand, within LRK55_RS05585at 1210.618 kb on - strand, within LRK55_RS05585at 1210.618 kb on - strand, within LRK55_RS05585at 1210.683 kb on + strand, within LRK55_RS05585at 1210.857 kb on + strand, within LRK55_RS05585at 1210.857 kb on + strand, within LRK55_RS05585at 1210.938 kb on + strand, within LRK55_RS05585at 1211.289 kb on - strandat 1211.318 kb on + strandat 1211.318 kb on + strandat 1211.319 kb on - strandat 1211.319 kb on - strandat 1211.343 kb on + strandat 1211.344 kb on - strandat 1211.450 kb on + strand, within LRK55_RS05590at 1211.450 kb on + strand, within LRK55_RS05590at 1211.450 kb on + strand, within LRK55_RS05590at 1211.450 kb on + strand, within LRK55_RS05590at 1211.451 kb on - strand, within LRK55_RS05590at 1211.451 kb on - strand, within LRK55_RS05590at 1211.451 kb on - strand, within LRK55_RS05590at 1211.606 kb on + strand, within LRK55_RS05590at 1211.606 kb on + strand, within LRK55_RS05590at 1211.606 kb on + strand, within LRK55_RS05590at 1211.607 kb on - strand, within LRK55_RS05590at 1211.607 kb on - strand, within LRK55_RS05590at 1211.607 kb on - strand, within LRK55_RS05590at 1211.610 kb on - strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.639 kb on + strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.640 kb on - strand, within LRK55_RS05590at 1211.709 kb on - strand, within LRK55_RS05590at 1211.795 kb on + strand, within LRK55_RS05590at 1211.795 kb on + strand, within LRK55_RS05590at 1211.795 kb on + strand, within LRK55_RS05590at 1211.795 kb on + strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.796 kb on - strand, within LRK55_RS05590at 1211.801 kb on + strand, within LRK55_RS05590at 1211.801 kb on + strand, within LRK55_RS05590at 1211.802 kb on - strand, within LRK55_RS05590at 1211.922 kb on - strand, within LRK55_RS05590at 1211.928 kb on - strand, within LRK55_RS05590at 1211.928 kb on - strand, within LRK55_RS05590at 1211.928 kb on - strand, within LRK55_RS05590at 1211.928 kb on - strand, within LRK55_RS05590at 1211.934 kb on - strand, within LRK55_RS05590at 1212.011 kb on + strand, within LRK55_RS05590at 1212.011 kb on + strand, within LRK55_RS05590at 1212.011 kb on + strand, within LRK55_RS05590at 1212.011 kb on + strand, within LRK55_RS05590at 1212.012 kb on - strand, within LRK55_RS05590at 1212.012 kb on - strand, within LRK55_RS05590at 1212.012 kb on - strand, within LRK55_RS05590at 1212.012 kb on - strand, within LRK55_RS05590at 1212.012 kb on - strand, within LRK55_RS05590at 1212.182 kb on + strand, within LRK55_RS05590at 1212.182 kb on + strand, within LRK55_RS05590at 1212.182 kb on + strand, within LRK55_RS05590at 1212.182 kb on + strand, within LRK55_RS05590at 1212.183 kb on - strand, within LRK55_RS05590at 1212.183 kb on - strand, within LRK55_RS05590at 1212.183 kb on - strand, within LRK55_RS05590at 1212.183 kb on - strand, within LRK55_RS05590at 1212.183 kb on - strand, within LRK55_RS05590at 1212.221 kb on + strand, within LRK55_RS05590at 1212.221 kb on + strand, within LRK55_RS05590at 1212.387 kb on - strand, within LRK55_RS05590at 1212.402 kb on - strand, within LRK55_RS05590at 1212.402 kb on - strand, within LRK55_RS05590at 1212.452 kb on + strand, within LRK55_RS05590at 1212.452 kb on + strand, within LRK55_RS05590at 1212.452 kb on + strand, within LRK55_RS05590at 1212.453 kb on - strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.488 kb on + strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.489 kb on - strand, within LRK55_RS05590at 1212.591 kb on - strandat 1212.599 kb on + strandat 1212.599 kb on + strandat 1212.599 kb on + strandat 1212.600 kb on - strandat 1212.600 kb on - strandat 1212.600 kb on - strandat 1212.620 kb on + strandat 1212.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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1,210,421 + -0.5
1,210,422 - +0.7
1,210,617 + LRK55_RS05585 0.19 -0.1
1,210,617 + LRK55_RS05585 0.19 -0.3
1,210,617 + LRK55_RS05585 0.19 +0.9
1,210,617 + LRK55_RS05585 0.19 +1.9
1,210,617 + LRK55_RS05585 0.19 +0.9
1,210,617 + LRK55_RS05585 0.19 +1.7
1,210,617 + LRK55_RS05585 0.19 +0.7
1,210,617 + LRK55_RS05585 0.19 -0.6
1,210,617 + LRK55_RS05585 0.19 -0.1
1,210,618 - LRK55_RS05585 0.19 +0.9
1,210,618 - LRK55_RS05585 0.19 +0.3
1,210,618 - LRK55_RS05585 0.19 -0.1
1,210,618 - LRK55_RS05585 0.19 +0.9
1,210,618 - LRK55_RS05585 0.19 +0.8
1,210,683 + LRK55_RS05585 0.27 +0.1
1,210,857 + LRK55_RS05585 0.50 -1.4
1,210,857 + LRK55_RS05585 0.50 -0.3
1,210,938 + LRK55_RS05585 0.61 +0.2
1,211,289 - +0.2
1,211,318 + -0.1
1,211,318 + +0.2
1,211,319 - +1.7
1,211,319 - +0.8
1,211,343 + +0.3
1,211,344 - -0.5
1,211,450 + LRK55_RS05590 0.13 -2.6
1,211,450 + LRK55_RS05590 0.13 -3.4
1,211,450 + LRK55_RS05590 0.13 -3.3
1,211,450 + LRK55_RS05590 0.13 -0.0
1,211,451 - LRK55_RS05590 0.13 +1.2
1,211,451 - LRK55_RS05590 0.13 +0.9
1,211,451 - LRK55_RS05590 0.13 -0.4
1,211,606 + LRK55_RS05590 0.24 +0.2
1,211,606 + LRK55_RS05590 0.24 +0.6
1,211,606 + LRK55_RS05590 0.24 +1.4
1,211,607 - LRK55_RS05590 0.24 -0.2
1,211,607 - LRK55_RS05590 0.24 -2.2
1,211,607 - LRK55_RS05590 0.24 +1.5
1,211,610 - LRK55_RS05590 0.24 -1.5
1,211,639 + LRK55_RS05590 0.26 -0.1
1,211,639 + LRK55_RS05590 0.26 -1.6
1,211,639 + LRK55_RS05590 0.26 -0.0
1,211,639 + LRK55_RS05590 0.26 +1.7
1,211,639 + LRK55_RS05590 0.26 +0.6
1,211,639 + LRK55_RS05590 0.26 -0.3
1,211,639 + LRK55_RS05590 0.26 +0.9
1,211,639 + LRK55_RS05590 0.26 -2.4
1,211,639 + LRK55_RS05590 0.26 -2.2
1,211,639 + LRK55_RS05590 0.26 +0.2
1,211,639 + LRK55_RS05590 0.26 -2.4
1,211,639 + LRK55_RS05590 0.26 -2.8
1,211,639 + LRK55_RS05590 0.26 +0.5
1,211,640 - LRK55_RS05590 0.26 -0.0
1,211,640 - LRK55_RS05590 0.26 -1.4
1,211,640 - LRK55_RS05590 0.26 +0.8
1,211,640 - LRK55_RS05590 0.26 +0.7
1,211,640 - LRK55_RS05590 0.26 +1.0
1,211,640 - LRK55_RS05590 0.26 +0.4
1,211,640 - LRK55_RS05590 0.26 -1.0
1,211,640 - LRK55_RS05590 0.26 +0.8
1,211,709 - LRK55_RS05590 0.31 +0.8
1,211,795 + LRK55_RS05590 0.37 -0.0
1,211,795 + LRK55_RS05590 0.37 -1.0
1,211,795 + LRK55_RS05590 0.37 -0.6
1,211,795 + LRK55_RS05590 0.37 -0.2
1,211,796 - LRK55_RS05590 0.37 -1.1
1,211,796 - LRK55_RS05590 0.37 +0.8
1,211,796 - LRK55_RS05590 0.37 -0.8
1,211,796 - LRK55_RS05590 0.37 -0.7
1,211,796 - LRK55_RS05590 0.37 +0.1
1,211,796 - LRK55_RS05590 0.37 +1.1
1,211,796 - LRK55_RS05590 0.37 -1.9
1,211,796 - LRK55_RS05590 0.37 -3.4
1,211,796 - LRK55_RS05590 0.37 +0.0
1,211,796 - LRK55_RS05590 0.37 +0.9
1,211,796 - LRK55_RS05590 0.37 +0.3
1,211,796 - LRK55_RS05590 0.37 +1.0
1,211,801 + LRK55_RS05590 0.38 +0.9
1,211,801 + LRK55_RS05590 0.38 -0.2
1,211,802 - LRK55_RS05590 0.38 +0.7
1,211,922 - LRK55_RS05590 0.46 +0.7
1,211,928 - LRK55_RS05590 0.47 -2.7
1,211,928 - LRK55_RS05590 0.47 +0.5
1,211,928 - LRK55_RS05590 0.47 -0.2
1,211,928 - LRK55_RS05590 0.47 -0.0
1,211,934 - LRK55_RS05590 0.47 +0.1
1,212,011 + LRK55_RS05590 0.53 -0.2
1,212,011 + LRK55_RS05590 0.53 -0.3
1,212,011 + LRK55_RS05590 0.53 -0.2
1,212,011 + LRK55_RS05590 0.53 +0.5
1,212,012 - LRK55_RS05590 0.53 -0.8
1,212,012 - LRK55_RS05590 0.53 +0.4
1,212,012 - LRK55_RS05590 0.53 +0.9
1,212,012 - LRK55_RS05590 0.53 -0.6
1,212,012 - LRK55_RS05590 0.53 -2.4
1,212,182 + LRK55_RS05590 0.65 +0.9
1,212,182 + LRK55_RS05590 0.65 +0.2
1,212,182 + LRK55_RS05590 0.65 +2.6
1,212,182 + LRK55_RS05590 0.65 +0.7
1,212,183 - LRK55_RS05590 0.65 +0.3
1,212,183 - LRK55_RS05590 0.65 +0.5
1,212,183 - LRK55_RS05590 0.65 -1.5
1,212,183 - LRK55_RS05590 0.65 +0.9
1,212,183 - LRK55_RS05590 0.65 +0.7
1,212,221 + LRK55_RS05590 0.68 +0.9
1,212,221 + LRK55_RS05590 0.68 -0.2
1,212,387 - LRK55_RS05590 0.80 +1.3
1,212,402 - LRK55_RS05590 0.81 +1.2
1,212,402 - LRK55_RS05590 0.81 +0.3
1,212,452 + LRK55_RS05590 0.84 +0.2
1,212,452 + LRK55_RS05590 0.84 +0.2
1,212,452 + LRK55_RS05590 0.84 +0.4
1,212,453 - LRK55_RS05590 0.84 +0.8
1,212,488 + LRK55_RS05590 0.87 +0.6
1,212,488 + LRK55_RS05590 0.87 +0.5
1,212,488 + LRK55_RS05590 0.87 +1.0
1,212,488 + LRK55_RS05590 0.87 -1.4
1,212,488 + LRK55_RS05590 0.87 -2.4
1,212,488 + LRK55_RS05590 0.87 +0.5
1,212,488 + LRK55_RS05590 0.87 +0.7
1,212,488 + LRK55_RS05590 0.87 -0.2
1,212,489 - LRK55_RS05590 0.87 +0.1
1,212,489 - LRK55_RS05590 0.87 -0.0
1,212,489 - LRK55_RS05590 0.87 +0.5
1,212,489 - LRK55_RS05590 0.87 -1.6
1,212,489 - LRK55_RS05590 0.87 +0.0
1,212,489 - LRK55_RS05590 0.87 +0.5
1,212,489 - LRK55_RS05590 0.87 -1.2
1,212,489 - LRK55_RS05590 0.87 -0.7
1,212,489 - LRK55_RS05590 0.87 +0.0
1,212,591 - +0.4
1,212,599 + +1.2
1,212,599 + +0.2
1,212,599 + +0.5
1,212,600 - +1.8
1,212,600 - +0.1
1,212,600 - +1.0
1,212,620 + +0.1
1,212,621 - -3.6

Or see this region's nucleotide sequence