Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04935

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04925 and LRK55_RS04930 overlap by 4 nucleotidesLRK55_RS04930 and LRK55_RS04935 overlap by 4 nucleotidesLRK55_RS04935 and LRK55_RS04940 overlap by 4 nucleotides LRK55_RS04925: LRK55_RS04925 - hypothetical protein, at 1,060,541 to 1,061,689 _RS04925 LRK55_RS04930: LRK55_RS04930 - glycosyltransferase, at 1,061,686 to 1,062,633 _RS04930 LRK55_RS04935: LRK55_RS04935 - O-antigen translocase, at 1,062,630 to 1,063,886 _RS04935 LRK55_RS04940: LRK55_RS04940 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 1,063,883 to 1,065,040 _RS04940 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1061.658 kb on + strandat 1061.659 kb on - strandat 1061.659 kb on - strandat 1061.850 kb on - strand, within LRK55_RS04930at 1062.158 kb on + strand, within LRK55_RS04930at 1062.159 kb on - strand, within LRK55_RS04930at 1062.278 kb on + strand, within LRK55_RS04930at 1062.278 kb on + strand, within LRK55_RS04930at 1062.278 kb on + strand, within LRK55_RS04930at 1062.279 kb on - strand, within LRK55_RS04930at 1062.314 kb on + strand, within LRK55_RS04930at 1062.314 kb on + strand, within LRK55_RS04930at 1062.315 kb on - strand, within LRK55_RS04930at 1062.315 kb on - strand, within LRK55_RS04930at 1062.411 kb on - strand, within LRK55_RS04930at 1062.411 kb on - strand, within LRK55_RS04930at 1062.411 kb on - strand, within LRK55_RS04930at 1062.411 kb on - strand, within LRK55_RS04930at 1062.619 kb on + strandat 1062.652 kb on + strandat 1062.685 kb on + strandat 1062.685 kb on + strandat 1062.686 kb on - strandat 1062.686 kb on - strandat 1062.686 kb on - strandat 1062.694 kb on + strandat 1062.694 kb on + strandat 1062.694 kb on + strandat 1062.695 kb on - strandat 1062.695 kb on - strandat 1062.695 kb on - strandat 1062.712 kb on + strandat 1062.712 kb on + strandat 1062.712 kb on + strandat 1062.712 kb on + strandat 1062.712 kb on + strandat 1062.712 kb on + strandat 1062.713 kb on - strandat 1062.713 kb on - strandat 1062.713 kb on - strandat 1062.713 kb on - strandat 1062.713 kb on - strandat 1062.713 kb on - strandat 1062.766 kb on + strand, within LRK55_RS04935at 1062.766 kb on + strand, within LRK55_RS04935at 1062.766 kb on + strand, within LRK55_RS04935at 1062.767 kb on - strand, within LRK55_RS04935at 1062.767 kb on - strand, within LRK55_RS04935at 1062.767 kb on - strand, within LRK55_RS04935at 1062.832 kb on + strand, within LRK55_RS04935at 1062.832 kb on + strand, within LRK55_RS04935at 1062.832 kb on + strand, within LRK55_RS04935at 1062.832 kb on + strand, within LRK55_RS04935at 1062.833 kb on - strand, within LRK55_RS04935at 1062.885 kb on + strand, within LRK55_RS04935at 1062.887 kb on - strand, within LRK55_RS04935at 1062.887 kb on - strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.952 kb on + strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1062.953 kb on - strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.060 kb on + strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.061 kb on - strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.063 kb on + strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.064 kb on - strand, within LRK55_RS04935at 1063.096 kb on + strand, within LRK55_RS04935at 1063.096 kb on + strand, within LRK55_RS04935at 1063.096 kb on + strand, within LRK55_RS04935at 1063.097 kb on - strand, within LRK55_RS04935at 1063.097 kb on - strand, within LRK55_RS04935at 1063.097 kb on - strand, within LRK55_RS04935at 1063.261 kb on + strand, within LRK55_RS04935at 1063.261 kb on + strand, within LRK55_RS04935at 1063.261 kb on + strand, within LRK55_RS04935at 1063.261 kb on + strand, within LRK55_RS04935at 1063.262 kb on - strand, within LRK55_RS04935at 1063.369 kb on + strand, within LRK55_RS04935at 1063.370 kb on - strand, within LRK55_RS04935at 1063.370 kb on - strand, within LRK55_RS04935at 1063.486 kb on + strand, within LRK55_RS04935at 1063.486 kb on + strand, within LRK55_RS04935at 1063.486 kb on + strand, within LRK55_RS04935at 1063.486 kb on + strand, within LRK55_RS04935at 1063.486 kb on + strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.487 kb on - strand, within LRK55_RS04935at 1063.543 kb on + strand, within LRK55_RS04935at 1063.543 kb on + strand, within LRK55_RS04935at 1063.631 kb on - strand, within LRK55_RS04935at 1063.631 kb on - strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.693 kb on + strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.694 kb on - strand, within LRK55_RS04935at 1063.861 kb on + strandat 1063.861 kb on + strandat 1063.862 kb on - strandat 1064.056 kb on - strand, within LRK55_RS04940at 1064.250 kb on + strand, within LRK55_RS04940at 1064.250 kb on + strand, within LRK55_RS04940at 1064.250 kb on + strand, within LRK55_RS04940at 1064.251 kb on - strand, within LRK55_RS04940at 1064.325 kb on + strand, within LRK55_RS04940at 1064.325 kb on + strand, within LRK55_RS04940at 1064.325 kb on + strand, within LRK55_RS04940at 1064.326 kb on - strand, within LRK55_RS04940at 1064.326 kb on - strand, within LRK55_RS04940at 1064.326 kb on - strand, within LRK55_RS04940at 1064.326 kb on - strand, within LRK55_RS04940at 1064.343 kb on + strand, within LRK55_RS04940at 1064.343 kb on + strand, within LRK55_RS04940at 1064.343 kb on + strand, within LRK55_RS04940at 1064.344 kb on - strand, within LRK55_RS04940at 1064.344 kb on - strand, within LRK55_RS04940at 1064.344 kb on - strand, within LRK55_RS04940at 1064.344 kb on - strand, within LRK55_RS04940at 1064.583 kb on + strand, within LRK55_RS04940at 1064.583 kb on + strand, within LRK55_RS04940at 1064.584 kb on - strand, within LRK55_RS04940at 1064.584 kb on - strand, within LRK55_RS04940at 1064.584 kb on - strand, within LRK55_RS04940

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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1,061,658 + +0.5
1,061,659 - -1.4
1,061,659 - -0.4
1,061,850 - LRK55_RS04930 0.17 -0.6
1,062,158 + LRK55_RS04930 0.50 +0.3
1,062,159 - LRK55_RS04930 0.50 -2.4
1,062,278 + LRK55_RS04930 0.62 +0.7
1,062,278 + LRK55_RS04930 0.62 -1.3
1,062,278 + LRK55_RS04930 0.62 +0.0
1,062,279 - LRK55_RS04930 0.63 -0.3
1,062,314 + LRK55_RS04930 0.66 -2.5
1,062,314 + LRK55_RS04930 0.66 -0.3
1,062,315 - LRK55_RS04930 0.66 -1.6
1,062,315 - LRK55_RS04930 0.66 +0.6
1,062,411 - LRK55_RS04930 0.76 -2.2
1,062,411 - LRK55_RS04930 0.76 -1.1
1,062,411 - LRK55_RS04930 0.76 -0.5
1,062,411 - LRK55_RS04930 0.76 +0.1
1,062,619 + -3.0
1,062,652 + +1.5
1,062,685 + -2.1
1,062,685 + -1.2
1,062,686 - -1.1
1,062,686 - -1.1
1,062,686 - +0.2
1,062,694 + -0.3
1,062,694 + -0.7
1,062,694 + +0.3
1,062,695 - -0.6
1,062,695 - -0.6
1,062,695 - -1.7
1,062,712 + -0.9
1,062,712 + -0.6
1,062,712 + -2.0
1,062,712 + -1.7
1,062,712 + -1.6
1,062,712 + -0.1
1,062,713 - -0.9
1,062,713 - -0.2
1,062,713 - -1.1
1,062,713 - -0.1
1,062,713 - -1.4
1,062,713 - -2.2
1,062,766 + LRK55_RS04935 0.11 -0.3
1,062,766 + LRK55_RS04935 0.11 -1.4
1,062,766 + LRK55_RS04935 0.11 +0.1
1,062,767 - LRK55_RS04935 0.11 -0.8
1,062,767 - LRK55_RS04935 0.11 -1.9
1,062,767 - LRK55_RS04935 0.11 -1.9
1,062,832 + LRK55_RS04935 0.16 -0.4
1,062,832 + LRK55_RS04935 0.16 -0.4
1,062,832 + LRK55_RS04935 0.16 -0.9
1,062,832 + LRK55_RS04935 0.16 +1.4
1,062,833 - LRK55_RS04935 0.16 +1.3
1,062,885 + LRK55_RS04935 0.20 -0.9
1,062,887 - LRK55_RS04935 0.20 -1.7
1,062,887 - LRK55_RS04935 0.20 -2.1
1,062,952 + LRK55_RS04935 0.26 +0.4
1,062,952 + LRK55_RS04935 0.26 -0.1
1,062,952 + LRK55_RS04935 0.26 -1.2
1,062,952 + LRK55_RS04935 0.26 -0.9
1,062,952 + LRK55_RS04935 0.26 -0.2
1,062,952 + LRK55_RS04935 0.26 -0.6
1,062,952 + LRK55_RS04935 0.26 +0.0
1,062,953 - LRK55_RS04935 0.26 -2.8
1,062,953 - LRK55_RS04935 0.26 -0.3
1,062,953 - LRK55_RS04935 0.26 -0.2
1,062,953 - LRK55_RS04935 0.26 -0.9
1,062,953 - LRK55_RS04935 0.26 +1.1
1,062,953 - LRK55_RS04935 0.26 -1.1
1,062,953 - LRK55_RS04935 0.26 -0.2
1,063,060 + LRK55_RS04935 0.34 +0.7
1,063,060 + LRK55_RS04935 0.34 -0.8
1,063,060 + LRK55_RS04935 0.34 -0.3
1,063,060 + LRK55_RS04935 0.34 -0.5
1,063,060 + LRK55_RS04935 0.34 +0.3
1,063,060 + LRK55_RS04935 0.34 +0.3
1,063,060 + LRK55_RS04935 0.34 -1.5
1,063,060 + LRK55_RS04935 0.34 -1.1
1,063,060 + LRK55_RS04935 0.34 -1.1
1,063,060 + LRK55_RS04935 0.34 -1.4
1,063,061 - LRK55_RS04935 0.34 -0.7
1,063,061 - LRK55_RS04935 0.34 -0.8
1,063,061 - LRK55_RS04935 0.34 -0.1
1,063,061 - LRK55_RS04935 0.34 -1.1
1,063,061 - LRK55_RS04935 0.34 +0.9
1,063,061 - LRK55_RS04935 0.34 -1.3
1,063,063 + LRK55_RS04935 0.34 +0.5
1,063,063 + LRK55_RS04935 0.34 +0.0
1,063,063 + LRK55_RS04935 0.34 -0.9
1,063,063 + LRK55_RS04935 0.34 +0.3
1,063,063 + LRK55_RS04935 0.34 -0.5
1,063,063 + LRK55_RS04935 0.34 +0.2
1,063,064 - LRK55_RS04935 0.35 -0.7
1,063,064 - LRK55_RS04935 0.35 -2.3
1,063,064 - LRK55_RS04935 0.35 -0.3
1,063,064 - LRK55_RS04935 0.35 -1.1
1,063,064 - LRK55_RS04935 0.35 -1.1
1,063,064 - LRK55_RS04935 0.35 -0.4
1,063,064 - LRK55_RS04935 0.35 -0.1
1,063,064 - LRK55_RS04935 0.35 -0.9
1,063,064 - LRK55_RS04935 0.35 +0.1
1,063,064 - LRK55_RS04935 0.35 +0.5
1,063,096 + LRK55_RS04935 0.37 -1.3
1,063,096 + LRK55_RS04935 0.37 -0.2
1,063,096 + LRK55_RS04935 0.37 -2.6
1,063,097 - LRK55_RS04935 0.37 +1.3
1,063,097 - LRK55_RS04935 0.37 +0.5
1,063,097 - LRK55_RS04935 0.37 -1.9
1,063,261 + LRK55_RS04935 0.50 -1.4
1,063,261 + LRK55_RS04935 0.50 +0.4
1,063,261 + LRK55_RS04935 0.50 -0.9
1,063,261 + LRK55_RS04935 0.50 -0.2
1,063,262 - LRK55_RS04935 0.50 -0.6
1,063,369 + LRK55_RS04935 0.59 -0.6
1,063,370 - LRK55_RS04935 0.59 -2.7
1,063,370 - LRK55_RS04935 0.59 -0.2
1,063,486 + LRK55_RS04935 0.68 -1.5
1,063,486 + LRK55_RS04935 0.68 -1.9
1,063,486 + LRK55_RS04935 0.68 +0.1
1,063,486 + LRK55_RS04935 0.68 -0.2
1,063,486 + LRK55_RS04935 0.68 +0.9
1,063,487 - LRK55_RS04935 0.68 +0.6
1,063,487 - LRK55_RS04935 0.68 -1.9
1,063,487 - LRK55_RS04935 0.68 -3.2
1,063,487 - LRK55_RS04935 0.68 -2.2
1,063,487 - LRK55_RS04935 0.68 +2.5
1,063,487 - LRK55_RS04935 0.68 +1.4
1,063,543 + LRK55_RS04935 0.73 -0.2
1,063,543 + LRK55_RS04935 0.73 +0.2
1,063,631 - LRK55_RS04935 0.80 -1.6
1,063,631 - LRK55_RS04935 0.80 -2.5
1,063,693 + LRK55_RS04935 0.85 +0.1
1,063,693 + LRK55_RS04935 0.85 -0.3
1,063,693 + LRK55_RS04935 0.85 +0.9
1,063,693 + LRK55_RS04935 0.85 +0.3
1,063,693 + LRK55_RS04935 0.85 +0.0
1,063,693 + LRK55_RS04935 0.85 +0.3
1,063,693 + LRK55_RS04935 0.85 -1.6
1,063,693 + LRK55_RS04935 0.85 -1.0
1,063,693 + LRK55_RS04935 0.85 -1.1
1,063,694 - LRK55_RS04935 0.85 -0.6
1,063,694 - LRK55_RS04935 0.85 +0.9
1,063,694 - LRK55_RS04935 0.85 -1.3
1,063,694 - LRK55_RS04935 0.85 -0.1
1,063,694 - LRK55_RS04935 0.85 -0.9
1,063,694 - LRK55_RS04935 0.85 -3.1
1,063,694 - LRK55_RS04935 0.85 -0.1
1,063,694 - LRK55_RS04935 0.85 -0.8
1,063,694 - LRK55_RS04935 0.85 +0.6
1,063,694 - LRK55_RS04935 0.85 -3.1
1,063,694 - LRK55_RS04935 0.85 -0.1
1,063,694 - LRK55_RS04935 0.85 -0.8
1,063,861 + +0.9
1,063,861 + +0.4
1,063,862 - -0.6
1,064,056 - LRK55_RS04940 0.15 -0.2
1,064,250 + LRK55_RS04940 0.32 -1.8
1,064,250 + LRK55_RS04940 0.32 -2.4
1,064,250 + LRK55_RS04940 0.32 -0.9
1,064,251 - LRK55_RS04940 0.32 +1.2
1,064,325 + LRK55_RS04940 0.38 +0.1
1,064,325 + LRK55_RS04940 0.38 -0.6
1,064,325 + LRK55_RS04940 0.38 -0.3
1,064,326 - LRK55_RS04940 0.38 +1.1
1,064,326 - LRK55_RS04940 0.38 +1.1
1,064,326 - LRK55_RS04940 0.38 -1.0
1,064,326 - LRK55_RS04940 0.38 -2.1
1,064,343 + LRK55_RS04940 0.40 +1.5
1,064,343 + LRK55_RS04940 0.40 +1.4
1,064,343 + LRK55_RS04940 0.40 -0.2
1,064,344 - LRK55_RS04940 0.40 +0.9
1,064,344 - LRK55_RS04940 0.40 +0.5
1,064,344 - LRK55_RS04940 0.40 -1.1
1,064,344 - LRK55_RS04940 0.40 -0.2
1,064,583 + LRK55_RS04940 0.60 +0.2
1,064,583 + LRK55_RS04940 0.60 +1.4
1,064,584 - LRK55_RS04940 0.61 -3.1
1,064,584 - LRK55_RS04940 0.61 +0.4
1,064,584 - LRK55_RS04940 0.61 +1.2

Or see this region's nucleotide sequence