Experiment: R2A with Zinc chloride 2560 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02955 and LRK55_RS02960 are separated by 22 nucleotides LRK55_RS02960 and LRK55_RS02965 are separated by 97 nucleotides LRK55_RS02965 and LRK55_RS02970 are separated by 11 nucleotides LRK55_RS02970 and LRK55_RS02975 are separated by 320 nucleotides
LRK55_RS02955: LRK55_RS02955 - phenylalanine--tRNA ligase subunit beta, at 636,726 to 639,104
_RS02955
LRK55_RS02960: LRK55_RS02960 - phenylalanine--tRNA ligase subunit alpha, at 639,127 to 640,122
_RS02960
LRK55_RS02965: LRK55_RS02965 - 50S ribosomal protein L20, at 640,220 to 640,579
_RS02965
LRK55_RS02970: LRK55_RS02970 - 50S ribosomal protein L35, at 640,591 to 640,788
_RS02970
LRK55_RS02975: LRK55_RS02975 - translation initiation factor IF-3, at 641,109 to 641,648
_RS02975
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1 at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.202 kb on + strand at 640.203 kb on - strand at 640.203 kb on - strand at 640.203 kb on - strand at 640.203 kb on - strand at 640.203 kb on - strand at 640.937 kb on - strand at 640.937 kb on - strand at 640.937 kb on - strand at 640.937 kb on - strand at 641.092 kb on + strand at 641.092 kb on + strand at 641.093 kb on - strand at 641.093 kb on - strand at 641.093 kb on - strand at 641.093 kb on - strand at 641.093 kb on - strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.110 kb on + strand at 641.111 kb on - strand at 641.111 kb on - strand at 641.111 kb on - strand at 641.111 kb on - strand at 641.111 kb on - strand at 641.111 kb on - strand at 641.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM remove 640,202 + -1.3 640,202 + -0.0 640,202 + +0.1 640,202 + -2.5 640,202 + -0.1 640,202 + +0.1 640,202 + -0.6 640,202 + +0.1 640,203 - -0.0 640,203 - +0.3 640,203 - -1.4 640,203 - -2.3 640,203 - +0.4 640,937 - +1.0 640,937 - +1.1 640,937 - -0.9 640,937 - +0.7 641,092 + -2.0 641,092 + +0.4 641,093 - +0.8 641,093 - -0.7 641,093 - -0.5 641,093 - -1.0 641,093 - +1.0 641,110 + -0.9 641,110 + -2.0 641,110 + -0.0 641,110 + -0.7 641,110 + -1.0 641,110 + -2.0 641,110 + -1.6 641,111 - -1.2 641,111 - -0.3 641,111 - +0.5 641,111 - +0.5 641,111 - +0.4 641,111 - -1.0 641,111 - +1.2
Or see this region's nucleotide sequence