Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18850

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS18845 and LRK55_RS18850 are separated by 94 nucleotidesLRK55_RS18850 and LRK55_RS18855 are separated by 2 nucleotides LRK55_RS18845: LRK55_RS18845 - DUF4396 domain-containing protein, at 108,870 to 110,918 _RS18845 LRK55_RS18850: LRK55_RS18850 - DUF411 domain-containing protein, at 111,013 to 111,465 _RS18850 LRK55_RS18855: LRK55_RS18855 - c-type cytochrome, at 111,468 to 112,583 _RS18855 Position (kb) 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.160 kb on + strand, within LRK55_RS18845at 110.160 kb on + strand, within LRK55_RS18845at 110.160 kb on + strand, within LRK55_RS18845at 110.160 kb on + strand, within LRK55_RS18845at 110.160 kb on + strand, within LRK55_RS18845at 110.160 kb on + strand, within LRK55_RS18845at 110.161 kb on - strand, within LRK55_RS18845at 110.161 kb on - strand, within LRK55_RS18845at 110.314 kb on + strand, within LRK55_RS18845at 110.314 kb on + strand, within LRK55_RS18845at 110.315 kb on - strand, within LRK55_RS18845at 110.484 kb on + strand, within LRK55_RS18845at 110.484 kb on + strand, within LRK55_RS18845at 110.484 kb on + strand, within LRK55_RS18845at 110.484 kb on + strand, within LRK55_RS18845at 110.485 kb on - strand, within LRK55_RS18845at 110.485 kb on - strand, within LRK55_RS18845at 110.485 kb on - strand, within LRK55_RS18845at 110.498 kb on - strand, within LRK55_RS18845at 110.569 kb on + strand, within LRK55_RS18845at 110.749 kb on + strandat 110.750 kb on - strandat 110.776 kb on + strandat 110.776 kb on + strandat 110.776 kb on + strandat 110.777 kb on - strandat 110.777 kb on - strandat 110.777 kb on - strandat 110.777 kb on - strandat 110.777 kb on - strandat 110.777 kb on - strandat 110.791 kb on - strandat 110.791 kb on - strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.851 kb on + strandat 110.852 kb on - strandat 110.852 kb on - strandat 110.852 kb on - strandat 110.852 kb on - strandat 110.888 kb on - strandat 110.936 kb on + strandat 110.936 kb on + strandat 110.937 kb on - strandat 111.081 kb on - strand, within LRK55_RS18850at 111.212 kb on + strand, within LRK55_RS18850at 111.212 kb on + strand, within LRK55_RS18850at 111.212 kb on + strand, within LRK55_RS18850at 111.212 kb on + strand, within LRK55_RS18850at 111.213 kb on - strand, within LRK55_RS18850at 111.213 kb on - strand, within LRK55_RS18850at 111.213 kb on - strand, within LRK55_RS18850at 111.213 kb on - strand, within LRK55_RS18850at 111.213 kb on - strand, within LRK55_RS18850at 111.315 kb on - strand, within LRK55_RS18850at 111.332 kb on + strand, within LRK55_RS18850at 111.333 kb on - strand, within LRK55_RS18850at 111.333 kb on - strand, within LRK55_RS18850at 111.333 kb on - strand, within LRK55_RS18850at 111.333 kb on - strand, within LRK55_RS18850at 111.333 kb on - strand, within LRK55_RS18850at 111.374 kb on + strand, within LRK55_RS18850at 111.374 kb on + strand, within LRK55_RS18850at 111.374 kb on + strand, within LRK55_RS18850at 111.375 kb on - strand, within LRK55_RS18850at 111.375 kb on - strand, within LRK55_RS18850at 111.375 kb on - strand, within LRK55_RS18850at 111.375 kb on - strand, within LRK55_RS18850at 111.375 kb on - strand, within LRK55_RS18850at 111.671 kb on + strand, within LRK55_RS18855at 111.712 kb on + strand, within LRK55_RS18855at 111.713 kb on - strand, within LRK55_RS18855at 111.777 kb on + strand, within LRK55_RS18855at 112.046 kb on + strand, within LRK55_RS18855at 112.046 kb on + strand, within LRK55_RS18855at 112.046 kb on + strand, within LRK55_RS18855at 112.046 kb on + strand, within LRK55_RS18855at 112.046 kb on + strand, within LRK55_RS18855at 112.047 kb on - strand, within LRK55_RS18855at 112.091 kb on - strand, within LRK55_RS18855at 112.146 kb on - strand, within LRK55_RS18855at 112.146 kb on - strand, within LRK55_RS18855at 112.245 kb on + strand, within LRK55_RS18855at 112.246 kb on - strand, within LRK55_RS18855at 112.246 kb on - strand, within LRK55_RS18855

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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110,160 + LRK55_RS18845 0.63 -0.6
110,160 + LRK55_RS18845 0.63 +0.3
110,160 + LRK55_RS18845 0.63 +0.5
110,160 + LRK55_RS18845 0.63 +1.5
110,160 + LRK55_RS18845 0.63 +0.5
110,160 + LRK55_RS18845 0.63 -0.4
110,161 - LRK55_RS18845 0.63 +1.0
110,161 - LRK55_RS18845 0.63 -1.4
110,314 + LRK55_RS18845 0.70 +0.5
110,314 + LRK55_RS18845 0.70 -1.2
110,315 - LRK55_RS18845 0.71 -0.2
110,484 + LRK55_RS18845 0.79 +1.3
110,484 + LRK55_RS18845 0.79 -0.1
110,484 + LRK55_RS18845 0.79 +0.1
110,484 + LRK55_RS18845 0.79 +0.3
110,485 - LRK55_RS18845 0.79 -2.9
110,485 - LRK55_RS18845 0.79 -1.0
110,485 - LRK55_RS18845 0.79 -1.6
110,498 - LRK55_RS18845 0.79 +0.1
110,569 + LRK55_RS18845 0.83 -1.5
110,749 + -1.3
110,750 - +0.8
110,776 + +1.3
110,776 + +0.9
110,776 + -0.5
110,777 - +0.4
110,777 - +0.8
110,777 - +1.4
110,777 - +1.2
110,777 - +0.2
110,777 - -0.4
110,791 - -1.1
110,791 - -1.9
110,851 + +0.1
110,851 + -1.4
110,851 + -0.4
110,851 + +0.6
110,851 + +0.2
110,851 + -0.3
110,851 + -0.7
110,851 + +2.3
110,852 - -0.1
110,852 - -0.5
110,852 - -1.4
110,852 - +0.5
110,888 - +0.5
110,936 + +0.7
110,936 + +0.3
110,937 - -0.1
111,081 - LRK55_RS18850 0.15 +0.7
111,212 + LRK55_RS18850 0.44 -1.2
111,212 + LRK55_RS18850 0.44 -0.0
111,212 + LRK55_RS18850 0.44 -0.7
111,212 + LRK55_RS18850 0.44 -3.3
111,213 - LRK55_RS18850 0.44 +0.0
111,213 - LRK55_RS18850 0.44 +0.1
111,213 - LRK55_RS18850 0.44 -0.1
111,213 - LRK55_RS18850 0.44 +1.0
111,213 - LRK55_RS18850 0.44 +0.5
111,315 - LRK55_RS18850 0.67 -0.9
111,332 + LRK55_RS18850 0.70 -0.2
111,333 - LRK55_RS18850 0.71 +0.6
111,333 - LRK55_RS18850 0.71 +2.1
111,333 - LRK55_RS18850 0.71 +0.3
111,333 - LRK55_RS18850 0.71 -3.1
111,333 - LRK55_RS18850 0.71 -1.0
111,374 + LRK55_RS18850 0.80 +0.3
111,374 + LRK55_RS18850 0.80 +0.9
111,374 + LRK55_RS18850 0.80 +0.2
111,375 - LRK55_RS18850 0.80 -0.6
111,375 - LRK55_RS18850 0.80 -1.5
111,375 - LRK55_RS18850 0.80 -1.3
111,375 - LRK55_RS18850 0.80 -1.5
111,375 - LRK55_RS18850 0.80 -0.2
111,671 + LRK55_RS18855 0.18 +0.9
111,712 + LRK55_RS18855 0.22 +0.4
111,713 - LRK55_RS18855 0.22 -2.3
111,777 + LRK55_RS18855 0.28 +0.1
112,046 + LRK55_RS18855 0.52 -0.4
112,046 + LRK55_RS18855 0.52 +0.3
112,046 + LRK55_RS18855 0.52 +0.9
112,046 + LRK55_RS18855 0.52 -0.1
112,046 + LRK55_RS18855 0.52 -1.5
112,047 - LRK55_RS18855 0.52 +0.9
112,091 - LRK55_RS18855 0.56 -0.1
112,146 - LRK55_RS18855 0.61 +0.6
112,146 - LRK55_RS18855 0.61 -2.5
112,245 + LRK55_RS18855 0.70 +0.8
112,246 - LRK55_RS18855 0.70 -1.0
112,246 - LRK55_RS18855 0.70 -0.9

Or see this region's nucleotide sequence