Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18495

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS18490 and LRK55_RS18495 are separated by 32 nucleotidesLRK55_RS18495 and LRK55_RS18500 are separated by 125 nucleotides LRK55_RS18490: LRK55_RS18490 - hypothetical protein, at 32,992 to 33,891 _RS18490 LRK55_RS18495: LRK55_RS18495 - PD-(D/E)XK nuclease family protein, at 33,924 to 34,820 _RS18495 LRK55_RS18500: LRK55_RS18500 - hypothetical protein, at 34,946 to 36,289 _RS18500 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.936 kb on + strandat 33.001 kb on - strandat 33.001 kb on - strandat 33.055 kb on + strandat 33.055 kb on + strandat 33.055 kb on + strandat 33.056 kb on - strandat 33.130 kb on + strand, within LRK55_RS18490at 33.130 kb on + strand, within LRK55_RS18490at 33.130 kb on + strand, within LRK55_RS18490at 33.130 kb on + strand, within LRK55_RS18490at 33.131 kb on - strand, within LRK55_RS18490at 33.131 kb on - strand, within LRK55_RS18490at 33.131 kb on - strand, within LRK55_RS18490at 33.163 kb on + strand, within LRK55_RS18490at 33.164 kb on - strand, within LRK55_RS18490at 33.224 kb on + strand, within LRK55_RS18490at 33.224 kb on + strand, within LRK55_RS18490at 33.224 kb on + strand, within LRK55_RS18490at 33.225 kb on - strand, within LRK55_RS18490at 33.225 kb on - strand, within LRK55_RS18490at 33.225 kb on - strand, within LRK55_RS18490at 33.225 kb on - strand, within LRK55_RS18490at 33.325 kb on + strand, within LRK55_RS18490at 33.325 kb on + strand, within LRK55_RS18490at 33.325 kb on + strand, within LRK55_RS18490at 33.325 kb on + strand, within LRK55_RS18490at 33.326 kb on - strand, within LRK55_RS18490at 33.326 kb on - strand, within LRK55_RS18490at 33.391 kb on + strand, within LRK55_RS18490at 33.391 kb on + strand, within LRK55_RS18490at 33.391 kb on + strand, within LRK55_RS18490at 33.392 kb on - strand, within LRK55_RS18490at 33.434 kb on + strand, within LRK55_RS18490at 33.821 kb on + strandat 33.821 kb on + strandat 33.821 kb on + strandat 33.822 kb on - strandat 33.822 kb on - strandat 33.822 kb on - strandat 33.832 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.894 kb on - strandat 33.894 kb on - strandat 33.957 kb on + strandat 33.958 kb on - strandat 33.958 kb on - strandat 34.006 kb on - strandat 34.006 kb on - strandat 34.011 kb on + strandat 34.011 kb on + strandat 34.113 kb on + strand, within LRK55_RS18495at 34.113 kb on + strand, within LRK55_RS18495at 34.114 kb on - strand, within LRK55_RS18495at 34.114 kb on - strand, within LRK55_RS18495at 34.114 kb on - strand, within LRK55_RS18495at 34.155 kb on + strand, within LRK55_RS18495at 34.155 kb on + strand, within LRK55_RS18495at 34.155 kb on + strand, within LRK55_RS18495at 34.155 kb on + strand, within LRK55_RS18495at 34.156 kb on - strand, within LRK55_RS18495at 34.156 kb on - strand, within LRK55_RS18495at 34.304 kb on + strand, within LRK55_RS18495at 34.402 kb on + strand, within LRK55_RS18495at 34.403 kb on - strand, within LRK55_RS18495at 34.403 kb on - strand, within LRK55_RS18495at 34.537 kb on + strand, within LRK55_RS18495at 34.537 kb on + strand, within LRK55_RS18495at 34.538 kb on - strand, within LRK55_RS18495at 34.650 kb on + strand, within LRK55_RS18495at 34.650 kb on + strand, within LRK55_RS18495at 34.650 kb on + strand, within LRK55_RS18495at 34.651 kb on - strand, within LRK55_RS18495at 34.651 kb on - strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.722 kb on + strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.723 kb on - strand, within LRK55_RS18495at 34.741 kb on + strandat 34.741 kb on + strandat 34.741 kb on + strandat 34.742 kb on - strandat 34.742 kb on - strandat 34.766 kb on + strandat 34.767 kb on - strandat 34.818 kb on + strandat 34.933 kb on + strandat 34.933 kb on + strandat 34.933 kb on + strandat 34.934 kb on - strandat 34.934 kb on - strandat 34.940 kb on + strandat 34.940 kb on + strandat 34.941 kb on - strandat 34.941 kb on - strandat 34.980 kb on + strandat 34.980 kb on + strandat 34.981 kb on - strandat 34.981 kb on - strandat 35.447 kb on + strand, within LRK55_RS18500at 35.447 kb on + strand, within LRK55_RS18500at 35.447 kb on + strand, within LRK55_RS18500at 35.448 kb on - strand, within LRK55_RS18500at 35.519 kb on + strand, within LRK55_RS18500at 35.519 kb on + strand, within LRK55_RS18500at 35.519 kb on + strand, within LRK55_RS18500at 35.519 kb on + strand, within LRK55_RS18500at 35.519 kb on + strand, within LRK55_RS18500at 35.591 kb on + strand, within LRK55_RS18500at 35.591 kb on + strand, within LRK55_RS18500at 35.591 kb on + strand, within LRK55_RS18500at 35.591 kb on + strand, within LRK55_RS18500at 35.591 kb on + strand, within LRK55_RS18500at 35.592 kb on - strand, within LRK55_RS18500at 35.592 kb on - strand, within LRK55_RS18500at 35.592 kb on - strand, within LRK55_RS18500at 35.592 kb on - strand, within LRK55_RS18500at 35.685 kb on + strand, within LRK55_RS18500at 35.685 kb on + strand, within LRK55_RS18500at 35.686 kb on - strand, within LRK55_RS18500at 35.686 kb on - strand, within LRK55_RS18500at 35.763 kb on + strand, within LRK55_RS18500at 35.763 kb on + strand, within LRK55_RS18500at 35.764 kb on - strand, within LRK55_RS18500at 35.764 kb on - strand, within LRK55_RS18500at 35.764 kb on - strand, within LRK55_RS18500at 35.764 kb on - strand, within LRK55_RS18500

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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32,936 + +0.0
33,001 - +0.6
33,001 - +0.1
33,055 + +1.1
33,055 + +0.1
33,055 + +0.8
33,056 - -0.1
33,130 + LRK55_RS18490 0.15 +1.2
33,130 + LRK55_RS18490 0.15 +0.3
33,130 + LRK55_RS18490 0.15 -1.3
33,130 + LRK55_RS18490 0.15 +1.6
33,131 - LRK55_RS18490 0.15 +0.4
33,131 - LRK55_RS18490 0.15 +0.3
33,131 - LRK55_RS18490 0.15 +1.3
33,163 + LRK55_RS18490 0.19 +0.8
33,164 - LRK55_RS18490 0.19 +1.8
33,224 + LRK55_RS18490 0.26 -3.2
33,224 + LRK55_RS18490 0.26 -2.1
33,224 + LRK55_RS18490 0.26 +0.5
33,225 - LRK55_RS18490 0.26 +0.9
33,225 - LRK55_RS18490 0.26 +0.1
33,225 - LRK55_RS18490 0.26 +1.4
33,225 - LRK55_RS18490 0.26 -0.3
33,325 + LRK55_RS18490 0.37 +0.8
33,325 + LRK55_RS18490 0.37 -1.9
33,325 + LRK55_RS18490 0.37 -0.9
33,325 + LRK55_RS18490 0.37 +2.1
33,326 - LRK55_RS18490 0.37 +0.6
33,326 - LRK55_RS18490 0.37 -0.8
33,391 + LRK55_RS18490 0.44 -0.2
33,391 + LRK55_RS18490 0.44 -0.2
33,391 + LRK55_RS18490 0.44 +0.3
33,392 - LRK55_RS18490 0.44 +0.6
33,434 + LRK55_RS18490 0.49 +0.3
33,821 + -2.7
33,821 + -0.1
33,821 + -0.6
33,822 - +0.9
33,822 - +0.9
33,822 - -0.1
33,832 + +0.5
33,893 + +0.8
33,893 + -0.2
33,893 + -0.2
33,893 + -0.3
33,893 + -0.2
33,893 + +0.5
33,894 - +0.3
33,894 - +0.4
33,957 + -1.8
33,958 - +1.6
33,958 - -2.7
34,006 - +0.2
34,006 - +0.3
34,011 + +0.8
34,011 + -0.9
34,113 + LRK55_RS18495 0.21 +1.0
34,113 + LRK55_RS18495 0.21 +0.2
34,114 - LRK55_RS18495 0.21 +0.3
34,114 - LRK55_RS18495 0.21 +1.4
34,114 - LRK55_RS18495 0.21 -2.3
34,155 + LRK55_RS18495 0.26 -0.4
34,155 + LRK55_RS18495 0.26 -0.4
34,155 + LRK55_RS18495 0.26 +0.9
34,155 + LRK55_RS18495 0.26 -0.7
34,156 - LRK55_RS18495 0.26 -1.8
34,156 - LRK55_RS18495 0.26 +1.0
34,304 + LRK55_RS18495 0.42 -0.1
34,402 + LRK55_RS18495 0.53 +1.9
34,403 - LRK55_RS18495 0.53 +0.2
34,403 - LRK55_RS18495 0.53 -1.4
34,537 + LRK55_RS18495 0.68 -1.4
34,537 + LRK55_RS18495 0.68 +1.5
34,538 - LRK55_RS18495 0.68 +0.1
34,650 + LRK55_RS18495 0.81 -0.4
34,650 + LRK55_RS18495 0.81 -0.9
34,650 + LRK55_RS18495 0.81 -1.7
34,651 - LRK55_RS18495 0.81 +1.1
34,651 - LRK55_RS18495 0.81 -1.3
34,722 + LRK55_RS18495 0.89 -0.3
34,722 + LRK55_RS18495 0.89 -0.1
34,722 + LRK55_RS18495 0.89 +1.0
34,722 + LRK55_RS18495 0.89 -1.3
34,722 + LRK55_RS18495 0.89 -1.2
34,722 + LRK55_RS18495 0.89 +2.5
34,722 + LRK55_RS18495 0.89 -1.8
34,722 + LRK55_RS18495 0.89 +0.7
34,722 + LRK55_RS18495 0.89 -2.5
34,723 - LRK55_RS18495 0.89 -0.2
34,723 - LRK55_RS18495 0.89 +0.6
34,723 - LRK55_RS18495 0.89 +0.8
34,723 - LRK55_RS18495 0.89 +0.5
34,723 - LRK55_RS18495 0.89 -0.0
34,723 - LRK55_RS18495 0.89 +0.9
34,723 - LRK55_RS18495 0.89 +0.3
34,723 - LRK55_RS18495 0.89 -0.6
34,723 - LRK55_RS18495 0.89 +0.7
34,723 - LRK55_RS18495 0.89 -1.3
34,723 - LRK55_RS18495 0.89 +0.2
34,723 - LRK55_RS18495 0.89 +0.9
34,723 - LRK55_RS18495 0.89 -0.7
34,723 - LRK55_RS18495 0.89 -1.4
34,723 - LRK55_RS18495 0.89 +0.9
34,723 - LRK55_RS18495 0.89 -1.4
34,741 + +0.1
34,741 + +1.9
34,741 + +0.5
34,742 - +0.1
34,742 - -0.7
34,766 + -1.2
34,767 - +0.7
34,818 + +0.9
34,933 + -1.9
34,933 + -1.7
34,933 + +1.6
34,934 - -1.8
34,934 - +0.8
34,940 + +0.1
34,940 + +0.5
34,941 - -2.0
34,941 - -1.8
34,980 + +0.8
34,980 + +0.4
34,981 - +0.0
34,981 - +0.0
35,447 + LRK55_RS18500 0.37 +1.5
35,447 + LRK55_RS18500 0.37 -0.4
35,447 + LRK55_RS18500 0.37 -0.6
35,448 - LRK55_RS18500 0.37 +0.6
35,519 + LRK55_RS18500 0.43 -0.3
35,519 + LRK55_RS18500 0.43 -0.3
35,519 + LRK55_RS18500 0.43 +0.2
35,519 + LRK55_RS18500 0.43 -0.3
35,519 + LRK55_RS18500 0.43 +0.9
35,591 + LRK55_RS18500 0.48 -0.6
35,591 + LRK55_RS18500 0.48 -0.4
35,591 + LRK55_RS18500 0.48 -1.7
35,591 + LRK55_RS18500 0.48 +1.8
35,591 + LRK55_RS18500 0.48 -0.6
35,592 - LRK55_RS18500 0.48 -0.7
35,592 - LRK55_RS18500 0.48 -1.4
35,592 - LRK55_RS18500 0.48 +0.2
35,592 - LRK55_RS18500 0.48 +0.3
35,685 + LRK55_RS18500 0.55 +0.4
35,685 + LRK55_RS18500 0.55 +1.1
35,686 - LRK55_RS18500 0.55 +1.1
35,686 - LRK55_RS18500 0.55 -0.9
35,763 + LRK55_RS18500 0.61 -1.3
35,763 + LRK55_RS18500 0.61 -0.9
35,764 - LRK55_RS18500 0.61 -1.1
35,764 - LRK55_RS18500 0.61 -1.1
35,764 - LRK55_RS18500 0.61 -1.4
35,764 - LRK55_RS18500 0.61 +0.6

Or see this region's nucleotide sequence