Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS13745

Experiment: R2A with Zinc chloride 2560 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc chloride 2560 uM
3,051,828	+		LRK55_RS13740	0.48	+1.7
3,051,828	+		LRK55_RS13740	0.48	-1.0
3,051,829	-		LRK55_RS13740	0.48	-1.7
3,051,870	+		LRK55_RS13740	0.50	+1.1
3,051,876	+		LRK55_RS13740	0.51	+0.3
3,051,876	+		LRK55_RS13740	0.51	+0.8
3,051,876	+		LRK55_RS13740	0.51	+1.9
3,051,877	-		LRK55_RS13740	0.51	-0.1
3,051,877	-		LRK55_RS13740	0.51	-1.4
3,051,877	-		LRK55_RS13740	0.51	+1.4
3,051,877	-		LRK55_RS13740	0.51	-1.5
3,051,877	-		LRK55_RS13740	0.51	+0.5
3,051,877	-		LRK55_RS13740	0.51	-0.3
3,051,877	-		LRK55_RS13740	0.51	-0.7
3,051,877	-		LRK55_RS13740	0.51	-0.1
3,051,877	-		LRK55_RS13740	0.51	-0.5
3,052,007	+		LRK55_RS13740	0.59	-2.1
3,052,007	+		LRK55_RS13740	0.59	-2.2
3,052,980	+		LRK55_RS13745	0.16	-2.6
3,052,980	+		LRK55_RS13745	0.16	-0.7
3,052,980	+		LRK55_RS13745	0.16	-2.2
3,052,980	+		LRK55_RS13745	0.16	-2.6
3,052,980	+		LRK55_RS13745	0.16	+0.2
3,052,980	+		LRK55_RS13745	0.16	+0.2
3,052,980	+		LRK55_RS13745	0.16	+0.5
3,052,980	+		LRK55_RS13745	0.16	+0.8
3,052,980	+		LRK55_RS13745	0.16	+0.8
3,052,980	+		LRK55_RS13745	0.16	+2.2
3,052,980	+		LRK55_RS13745	0.16	-1.9
3,052,980	+		LRK55_RS13745	0.16	-0.4
3,052,981	-		LRK55_RS13745	0.16	-1.2
3,052,981	-		LRK55_RS13745	0.16	-0.2
3,052,981	-		LRK55_RS13745	0.16	-0.8
3,052,981	-		LRK55_RS13745	0.16	-0.9
3,052,981	-		LRK55_RS13745	0.16	+0.8
3,052,981	-		LRK55_RS13745	0.16	-0.4
3,052,981	-		LRK55_RS13745	0.16	-1.4
3,053,010	+		LRK55_RS13745	0.18	-1.5
3,053,010	+		LRK55_RS13745	0.18	+0.2
3,053,011	-		LRK55_RS13745	0.19	+0.6
3,053,011	-		LRK55_RS13745	0.19	-0.6
3,053,011	-		LRK55_RS13745	0.19	-2.9
3,053,022	+		LRK55_RS13745	0.20	-0.7
3,053,022	+		LRK55_RS13745	0.20	-0.8
3,053,023	-		LRK55_RS13745	0.20	-1.8
3,053,023	-		LRK55_RS13745	0.20	-1.9
3,053,023	-		LRK55_RS13745	0.20	-0.4
3,053,044	-		LRK55_RS13745	0.22	-1.1
3,053,044	-		LRK55_RS13745	0.22	-0.9
3,053,106	+		LRK55_RS13745	0.27	-0.4
3,053,106	+		LRK55_RS13745	0.27	-0.1
3,053,106	+		LRK55_RS13745	0.27	+0.3
3,053,106	+		LRK55_RS13745	0.27	-0.9
3,053,107	-		LRK55_RS13745	0.28	-1.4
3,053,107	-		LRK55_RS13745	0.28	+1.6
3,053,152	-		LRK55_RS13745	0.32	+1.2
3,053,230	-		LRK55_RS13745	0.39	-0.1
3,053,271	+		LRK55_RS13745	0.43	-0.4
3,053,271	+		LRK55_RS13745	0.43	-0.2
3,053,272	-		LRK55_RS13745	0.43	+0.3
3,053,277	+		LRK55_RS13745	0.44	+1.7
3,053,277	+		LRK55_RS13745	0.44	-0.2
3,053,278	-		LRK55_RS13745	0.44	-1.2
3,053,278	-		LRK55_RS13745	0.44	-0.9
3,053,278	-		LRK55_RS13745	0.44	-1.4
3,053,278	-		LRK55_RS13745	0.44	+1.8
3,053,304	+		LRK55_RS13745	0.46	+1.4
3,053,304	+		LRK55_RS13745	0.46	-0.1
3,053,304	+		LRK55_RS13745	0.46	+0.6
3,053,304	+		LRK55_RS13745	0.46	+0.6
3,053,304	+		LRK55_RS13745	0.46	+0.3
3,053,304	+		LRK55_RS13745	0.46	+1.3
3,053,304	+		LRK55_RS13745	0.46	-1.6
3,053,304	+		LRK55_RS13745	0.46	+0.0
3,053,304	+		LRK55_RS13745	0.46	-0.6
3,053,304	+		LRK55_RS13745	0.46	+0.5
3,053,304	+		LRK55_RS13745	0.46	+0.8
3,053,304	+		LRK55_RS13745	0.46	+0.0
3,053,304	+		LRK55_RS13745	0.46	-1.2
3,053,304	+		LRK55_RS13745	0.46	+0.1
3,053,304	+		LRK55_RS13745	0.46	+1.5
3,053,304	+		LRK55_RS13745	0.46	+0.7
3,053,304	+		LRK55_RS13745	0.46	-1.9
3,053,304	+		LRK55_RS13745	0.46	-0.6
3,053,304	+		LRK55_RS13745	0.46	-0.4
3,053,304	+		LRK55_RS13745	0.46	-1.1
3,053,305	-		LRK55_RS13745	0.46	+0.0
3,053,305	-		LRK55_RS13745	0.46	-0.4
3,053,305	-		LRK55_RS13745	0.46	-1.4
3,053,305	-		LRK55_RS13745	0.46	-0.9
3,053,305	-		LRK55_RS13745	0.46	+1.0
3,053,305	-		LRK55_RS13745	0.46	-1.3
3,053,305	-		LRK55_RS13745	0.46	-0.4
3,053,305	-		LRK55_RS13745	0.46	+0.5
3,053,305	-		LRK55_RS13745	0.46	-2.2
3,053,305	-		LRK55_RS13745	0.46	-3.4
3,053,305	-		LRK55_RS13745	0.46	-1.0
3,053,305	-		LRK55_RS13745	0.46	+0.3
3,053,305	-		LRK55_RS13745	0.46	+1.2
3,053,305	-		LRK55_RS13745	0.46	-1.0
3,053,305	-		LRK55_RS13745	0.46	-0.5
3,053,305	-		LRK55_RS13745	0.46	-0.9
3,053,305	-		LRK55_RS13745	0.46	-1.9
3,053,306	+		LRK55_RS13745	0.46	-1.9
3,053,306	+		LRK55_RS13745	0.46	+0.3
3,053,306	+		LRK55_RS13745	0.46	-1.2
3,053,306	+		LRK55_RS13745	0.46	-1.1
3,053,306	+		LRK55_RS13745	0.46	+1.4
3,053,306	+		LRK55_RS13745	0.46	+2.7
3,053,307	-		LRK55_RS13745	0.46	-0.8
3,053,307	-		LRK55_RS13745	0.46	+0.9
3,053,307	-		LRK55_RS13745	0.46	+0.6
3,053,485	+		LRK55_RS13745	0.63	-0.4
3,053,485	+		LRK55_RS13745	0.63	-1.4
3,053,486	-		LRK55_RS13745	0.63	-1.4
3,053,505	+		LRK55_RS13745	0.65	-0.1
3,053,505	+		LRK55_RS13745	0.65	-0.9
3,053,505	+		LRK55_RS13745	0.65	-1.2
3,053,505	+		LRK55_RS13745	0.65	+0.9
3,053,697	+		LRK55_RS13745	0.83	-2.6
3,053,697	+		LRK55_RS13745	0.83	+3.5
3,053,697	+		LRK55_RS13745	0.83	-0.8
3,053,698	-		LRK55_RS13745	0.83	+0.7
3,053,698	-		LRK55_RS13745	0.83	+1.1
3,053,718	+		LRK55_RS13745	0.85	-1.7
3,053,719	-		LRK55_RS13745	0.85	+1.3
3,053,719	-		LRK55_RS13745	0.85	-1.2
3,054,024	+				+1.1
3,054,585	-		LRK55_RS13750	0.40	-0.4
3,054,658	+		LRK55_RS13750	0.47	-0.0
3,054,658	+		LRK55_RS13750	0.47	-0.0
3,054,658	+		LRK55_RS13750	0.47	+0.6
3,054,658	+		LRK55_RS13750	0.47	-1.9
3,054,658	+		LRK55_RS13750	0.47	+0.2
3,054,658	+		LRK55_RS13750	0.47	-0.1
3,054,658	+		LRK55_RS13750	0.47	-0.7
3,054,658	+		LRK55_RS13750	0.47	-0.7
3,054,658	+		LRK55_RS13750	0.47	+1.9
3,054,658	+		LRK55_RS13750	0.47	-0.0
3,054,658	+		LRK55_RS13750	0.47	+0.7
3,054,659	-		LRK55_RS13750	0.47	+0.7
3,054,659	-		LRK55_RS13750	0.47	+1.5
3,054,659	-		LRK55_RS13750	0.47	+0.3
3,054,659	-		LRK55_RS13750	0.47	-2.8
3,054,659	-		LRK55_RS13750	0.47	-0.2
3,054,702	-		LRK55_RS13750	0.51	-2.9