Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS12220

Experiment: R2A with Zinc chloride 2560 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc chloride 2560 uM
2,712,527	-		LRK55_RS12210	0.46	-1.6
2,712,656	+		LRK55_RS12210	0.71	-1.9
2,712,656	+		LRK55_RS12210	0.71	+0.4
2,712,656	+		LRK55_RS12210	0.71	+1.8
2,712,657	-		LRK55_RS12210	0.71	+0.2
2,712,657	-		LRK55_RS12210	0.71	+0.4
2,713,015	+		LRK55_RS12215	0.30	+0.9
2,713,015	+		LRK55_RS12215	0.30	+1.0
2,713,015	+		LRK55_RS12215	0.30	-0.6
2,713,016	-		LRK55_RS12215	0.31	+1.9
2,713,016	-		LRK55_RS12215	0.31	-0.1
2,713,016	-		LRK55_RS12215	0.31	-0.2
2,713,168	+		LRK55_RS12215	0.53	-0.5
2,713,168	+		LRK55_RS12215	0.53	+0.4
2,713,168	+		LRK55_RS12215	0.53	+0.3
2,713,169	-		LRK55_RS12215	0.53	+0.2
2,713,169	-		LRK55_RS12215	0.53	-1.9
2,713,169	-		LRK55_RS12215	0.53	-1.7
2,713,280	+		LRK55_RS12215	0.69	-0.9
2,713,348	+		LRK55_RS12215	0.79	-1.3
2,713,348	+		LRK55_RS12215	0.79	+1.2
2,713,614	+		LRK55_RS12220	0.13	-2.4
2,713,614	+		LRK55_RS12220	0.13	-0.6
2,713,615	-		LRK55_RS12220	0.13	-1.6
2,713,659	+		LRK55_RS12220	0.18	-1.2
2,713,660	-		LRK55_RS12220	0.18	+2.1
2,713,694	-		LRK55_RS12220	0.21	-0.1
2,713,719	+		LRK55_RS12220	0.24	-0.9
2,713,720	-		LRK55_RS12220	0.24	-1.0
2,713,830	+		LRK55_RS12220	0.35	+2.0
2,713,831	-		LRK55_RS12220	0.35	-0.9
2,713,831	-		LRK55_RS12220	0.35	+0.3
2,713,831	-		LRK55_RS12220	0.35	-0.2
2,713,831	-		LRK55_RS12220	0.35	+0.1
2,713,831	-		LRK55_RS12220	0.35	-0.2
2,713,898	+		LRK55_RS12220	0.42	+1.1
2,713,899	-		LRK55_RS12220	0.42	-1.2
2,713,899	-		LRK55_RS12220	0.42	-0.2
2,713,929	+		LRK55_RS12220	0.45	+0.2
2,713,929	+		LRK55_RS12220	0.45	-0.2
2,713,929	+		LRK55_RS12220	0.45	-0.0
2,713,929	+		LRK55_RS12220	0.45	+0.0
2,713,929	+		LRK55_RS12220	0.45	-1.1
2,713,929	+		LRK55_RS12220	0.45	-0.8
2,713,929	+		LRK55_RS12220	0.45	-0.3
2,713,929	+		LRK55_RS12220	0.45	-1.5
2,713,929	+		LRK55_RS12220	0.45	+1.5
2,713,929	+		LRK55_RS12220	0.45	+1.4
2,713,929	+		LRK55_RS12220	0.45	-0.6
2,713,929	+		LRK55_RS12220	0.45	-0.9
2,713,930	-		LRK55_RS12220	0.46	+0.4
2,713,930	-		LRK55_RS12220	0.46	-1.0
2,713,930	-		LRK55_RS12220	0.46	-2.3
2,713,930	-		LRK55_RS12220	0.46	-0.6
2,713,930	-		LRK55_RS12220	0.46	-1.4
2,713,930	-		LRK55_RS12220	0.46	-0.1
2,713,930	-		LRK55_RS12220	0.46	-0.0
2,713,990	-		LRK55_RS12220	0.52	+0.5
2,713,992	+		LRK55_RS12220	0.52	-2.2
2,713,992	+		LRK55_RS12220	0.52	-0.7
2,713,992	+		LRK55_RS12220	0.52	+0.7
2,713,992	+		LRK55_RS12220	0.52	-2.0
2,713,992	+		LRK55_RS12220	0.52	+0.0
2,713,992	+		LRK55_RS12220	0.52	-0.1
2,713,992	+		LRK55_RS12220	0.52	+2.0
2,713,992	+		LRK55_RS12220	0.52	-0.9
2,713,992	+		LRK55_RS12220	0.52	-0.3
2,713,992	+		LRK55_RS12220	0.52	-3.5
2,713,992	+		LRK55_RS12220	0.52	-1.9
2,713,993	-		LRK55_RS12220	0.52	-0.7
2,713,993	-		LRK55_RS12220	0.52	-1.3
2,713,993	-		LRK55_RS12220	0.52	-0.9
2,713,993	-		LRK55_RS12220	0.52	-0.2
2,713,993	-		LRK55_RS12220	0.52	-3.3
2,713,993	-		LRK55_RS12220	0.52	-0.8
2,713,993	-		LRK55_RS12220	0.52	-2.2
2,714,064	+		LRK55_RS12220	0.59	+0.1
2,714,064	+		LRK55_RS12220	0.59	-0.4
2,714,064	+		LRK55_RS12220	0.59	-1.1
2,714,064	+		LRK55_RS12220	0.59	-0.3
2,714,065	-		LRK55_RS12220	0.59	-0.3
2,714,065	-		LRK55_RS12220	0.59	+1.1
2,714,065	-		LRK55_RS12220	0.59	-3.7
2,714,065	-		LRK55_RS12220	0.59	-0.8
2,714,065	-		LRK55_RS12220	0.59	+0.5
2,714,065	-		LRK55_RS12220	0.59	-2.4
2,714,344	-		LRK55_RS12220	0.88	-1.5
2,714,344	-		LRK55_RS12220	0.88	-0.5
2,714,344	-		LRK55_RS12220	0.88	+0.4
2,714,344	-		LRK55_RS12220	0.88	+0.4
2,714,683	+		LRK55_RS12225	0.15	+0.5
2,714,683	+		LRK55_RS12225	0.15	-0.8
2,714,683	+		LRK55_RS12225	0.15	-1.9
2,714,683	+		LRK55_RS12225	0.15	-1.6
2,714,684	-		LRK55_RS12225	0.15	-0.5
2,714,684	-		LRK55_RS12225	0.15	+0.3
2,714,684	-		LRK55_RS12225	0.15	+0.9
2,714,684	-		LRK55_RS12225	0.15	-0.9
2,714,684	-		LRK55_RS12225	0.15	-0.4
2,714,684	-		LRK55_RS12225	0.15	-0.3
2,714,917	+		LRK55_RS12225	0.31	+0.7
2,714,917	+		LRK55_RS12225	0.31	-0.5
2,714,917	+		LRK55_RS12225	0.31	-0.8
2,714,917	+		LRK55_RS12225	0.31	+0.8
2,714,917	+		LRK55_RS12225	0.31	+0.6
2,714,917	+		LRK55_RS12225	0.31	-0.2
2,714,917	+		LRK55_RS12225	0.31	+0.2
2,714,917	+		LRK55_RS12225	0.31	-0.5
2,714,918	-		LRK55_RS12225	0.31	-0.8
2,714,918	-		LRK55_RS12225	0.31	+0.2
2,714,918	-		LRK55_RS12225	0.31	-2.5
2,714,918	-		LRK55_RS12225	0.31	-1.1
2,714,918	-		LRK55_RS12225	0.31	-1.9
2,714,918	-		LRK55_RS12225	0.31	+0.9
2,714,918	-		LRK55_RS12225	0.31	-0.4
2,715,079	+		LRK55_RS12225	0.41	-0.6
2,715,080	-		LRK55_RS12225	0.41	-0.8
2,715,080	-		LRK55_RS12225	0.41	-0.1
2,715,080	-		LRK55_RS12225	0.41	+1.2
2,715,080	-		LRK55_RS12225	0.41	-2.0
2,715,080	-		LRK55_RS12225	0.41	-0.4
2,715,080	-		LRK55_RS12225	0.41	-1.3
2,715,109	+		LRK55_RS12225	0.43	-0.2
2,715,109	+		LRK55_RS12225	0.43	-1.2
2,715,109	+		LRK55_RS12225	0.43	-2.6
2,715,109	+		LRK55_RS12225	0.43	+0.3
2,715,109	+		LRK55_RS12225	0.43	-0.1
2,715,110	-		LRK55_RS12225	0.43	+0.1
2,715,110	-		LRK55_RS12225	0.43	-1.9
2,715,110	-		LRK55_RS12225	0.43	-1.0
2,715,110	-		LRK55_RS12225	0.43	+0.1
2,715,110	-		LRK55_RS12225	0.43	-2.1
2,715,133	+		LRK55_RS12225	0.45	+0.3
2,715,134	-		LRK55_RS12225	0.45	+1.8
2,715,382	+		LRK55_RS12225	0.61	+0.8
2,715,383	-		LRK55_RS12225	0.61	+0.2
2,715,436	+		LRK55_RS12225	0.65	+1.1
2,715,436	+		LRK55_RS12225	0.65	+1.2
2,715,437	-		LRK55_RS12225	0.65	-0.8
2,715,437	-		LRK55_RS12225	0.65	-0.2
2,715,437	-		LRK55_RS12225	0.65	+0.9
2,715,437	-		LRK55_RS12225	0.65	+0.5
2,715,437	-		LRK55_RS12225	0.65	-1.3
2,715,437	-		LRK55_RS12225	0.65	+0.7
2,715,437	-		LRK55_RS12225	0.65	-1.2