Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04090

Experiment: R2A with Zinc chloride 2560 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04085 and LRK55_RS04090 are separated by 108 nucleotidesLRK55_RS04090 and LRK55_RS04095 are separated by 5 nucleotides LRK55_RS04085: LRK55_RS04085 - 3-dehydroquinate synthase, at 866,162 to 867,253 _RS04085 LRK55_RS04090: LRK55_RS04090 - WGR domain-containing protein, at 867,362 to 867,622 _RS04090 LRK55_RS04095: LRK55_RS04095 - uroporphyrinogen decarboxylase, at 867,628 to 868,698 _RS04095 Position (kb) 867 868Strain fitness (log2 ratio) -1 0 1at 867.225 kb on + strandat 867.310 kb on + strandat 867.310 kb on + strandat 867.312 kb on + strandat 867.312 kb on + strandat 867.313 kb on - strandat 867.313 kb on - strandat 867.313 kb on - strandat 867.371 kb on + strandat 867.372 kb on - strandat 867.410 kb on + strand, within LRK55_RS04090at 867.411 kb on - strand, within LRK55_RS04090at 867.459 kb on - strand, within LRK55_RS04090

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc chloride 2560 uM
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867,225 + -1.7
867,310 + +0.7
867,310 + +0.6
867,312 + +0.4
867,312 + -0.4
867,313 - +0.2
867,313 - -1.1
867,313 - +0.5
867,371 + -1.7
867,372 - -0.4
867,410 + LRK55_RS04090 0.18 +0.0
867,411 - LRK55_RS04090 0.19 -0.8
867,459 - LRK55_RS04090 0.37 -0.9

Or see this region's nucleotide sequence