Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10075

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10060 and ECOLIN_RS10070 are separated by 421 nucleotidesECOLIN_RS10070 and ECOLIN_RS10075 are separated by 119 nucleotidesECOLIN_RS10075 and ECOLIN_RS10080 are separated by 73 nucleotides ECOLIN_RS10060: ECOLIN_RS10060 - RidA family protein, at 1,977,352 to 1,977,696 _RS10060 ECOLIN_RS10070: ECOLIN_RS10070 - DUF1889 family protein, at 1,978,118 to 1,978,417 _RS10070 ECOLIN_RS10075: ECOLIN_RS10075 - YoaH family protein, at 1,978,537 to 1,978,716 _RS10075 ECOLIN_RS10080: ECOLIN_RS10080 - aminodeoxychorismate synthase component 1, at 1,978,790 to 1,980,151 _RS10080 Position (kb) 1978 1979Strain fitness (log2 ratio) -1 0 1at 1978.509 kb on + strandat 1979.715 kb on + strand, within ECOLIN_RS10080

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,978,509 + +0.1
1,979,715 + ECOLIN_RS10080 0.68 -0.5

Or see this region's nucleotide sequence