Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07350

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07340 and ECOLIN_RS07345 are separated by 148 nucleotidesECOLIN_RS07345 and ECOLIN_RS07350 are separated by 409 nucleotidesECOLIN_RS07350 and ECOLIN_RS07355 are separated by 269 nucleotidesECOLIN_RS07355 and ECOLIN_RS07360 are separated by 145 nucleotides ECOLIN_RS07340: ECOLIN_RS07340 - 3-deoxy-8-phosphooctulonate synthase, at 1,433,974 to 1,434,828 _RS07340 ECOLIN_RS07345: ECOLIN_RS07345 - type I toxin-antitoxin system toxin Ldr family protein, at 1,434,977 to 1,435,084 _RS07345 ECOLIN_RS07350: ECOLIN_RS07350 - sodium-potassium/proton antiporter ChaA, at 1,435,494 to 1,436,594 _RS07350 ECOLIN_RS07355: ECOLIN_RS07355 - putative cation transport regulator ChaB, at 1,436,864 to 1,437,094 _RS07355 ECOLIN_RS07360: ECOLIN_RS07360 - glutathione-specific gamma-glutamylcyclotransferase, at 1,437,240 to 1,437,935 _RS07360 Position (kb) 1435 1436 1437Strain fitness (log2 ratio) -1 0 1at 1436.192 kb on + strand, within ECOLIN_RS07350at 1437.073 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,436,192 + ECOLIN_RS07350 0.63 -0.5
1,437,073 + +0.0

Or see this region's nucleotide sequence