Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS05270

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS05260 and ECOLIN_RS05265 are separated by 9 nucleotidesECOLIN_RS05265 and ECOLIN_RS05270 are separated by 7 nucleotidesECOLIN_RS05270 and ECOLIN_RS05275 are separated by 11 nucleotidesECOLIN_RS05275 and ECOLIN_RS05280 overlap by 1 nucleotides ECOLIN_RS05260: ECOLIN_RS05260 - malonic semialdehyde reductase, at 1,076,537 to 1,077,127 _RS05260 ECOLIN_RS05265: ECOLIN_RS05265 - pyrimidine utilization protein D, at 1,077,137 to 1,077,937 _RS05265 ECOLIN_RS05270: ECOLIN_RS05270 - 3-aminoacrylate deaminase, at 1,077,945 to 1,078,331 _RS05270 ECOLIN_RS05275: ECOLIN_RS05275 - peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 1,078,343 to 1,079,035 _RS05275 ECOLIN_RS05280: ECOLIN_RS05280 - pyrimidine utilization protein A, at 1,079,035 to 1,080,126 _RS05280 Position (kb) 1077 1078 1079Strain fitness (log2 ratio) -1 0 1at 1078.215 kb on - strand, within ECOLIN_RS05270

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,078,215 - ECOLIN_RS05270 0.70 +0.1

Or see this region's nucleotide sequence