Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00600 and ECOLIN_RS00605 are separated by 527 nucleotides ECOLIN_RS00605 and ECOLIN_RS00610 are separated by 5 nucleotides ECOLIN_RS00610 and ECOLIN_RS00615 are separated by 158 nucleotides ECOLIN_RS00615 and ECOLIN_RS00620 are separated by 2 nucleotides
ECOLIN_RS00600: ECOLIN_RS00600 - aromatic amino acid transporter AroP, at 123,264 to 124,634
_RS00600
ECOLIN_RS00605: ECOLIN_RS00605 - type VI secretion system tube protein TssD, at 125,162 to 126,943
_RS00605
ECOLIN_RS00610: ECOLIN_RS00610 - bacteriocin immunity protein, at 126,949 to 127,239
_RS00610
ECOLIN_RS00615: ECOLIN_RS00615 - HNH endonuclease signature motif containing protein, at 127,398 to 127,634
_RS00615
ECOLIN_RS00620: ECOLIN_RS00620 - bacteriocin immunity protein, at 127,637 to 127,930
_RS00620
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1
2 at 124.382 kb on - strand, within ECOLIN_RS00600 at 124.386 kb on - strand, within ECOLIN_RS00600 at 124.807 kb on + strand at 124.876 kb on - strand at 124.907 kb on + strand at 124.979 kb on - strand at 125.024 kb on - strand at 125.565 kb on + strand, within ECOLIN_RS00605 at 125.565 kb on + strand, within ECOLIN_RS00605 at 125.671 kb on + strand, within ECOLIN_RS00605 at 125.732 kb on + strand, within ECOLIN_RS00605 at 125.764 kb on + strand, within ECOLIN_RS00605 at 125.907 kb on + strand, within ECOLIN_RS00605 at 125.967 kb on + strand, within ECOLIN_RS00605 at 125.990 kb on + strand, within ECOLIN_RS00605 at 126.018 kb on - strand, within ECOLIN_RS00605 at 126.174 kb on - strand, within ECOLIN_RS00605 at 126.413 kb on + strand, within ECOLIN_RS00605 at 126.413 kb on + strand, within ECOLIN_RS00605 at 126.414 kb on - strand, within ECOLIN_RS00605 at 126.414 kb on - strand, within ECOLIN_RS00605 at 126.463 kb on + strand, within ECOLIN_RS00605 at 126.493 kb on + strand, within ECOLIN_RS00605 at 126.504 kb on - strand, within ECOLIN_RS00605 at 126.504 kb on - strand, within ECOLIN_RS00605 at 126.504 kb on - strand, within ECOLIN_RS00605 at 126.546 kb on + strand, within ECOLIN_RS00605 at 126.668 kb on - strand, within ECOLIN_RS00605 at 126.822 kb on + strand at 126.822 kb on + strand at 126.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 124,382 - ECOLIN_RS00600 0.82 +2.1 124,386 - ECOLIN_RS00600 0.82 +0.6 124,807 + -0.4 124,876 - +0.1 124,907 + +0.0 124,979 - -0.3 125,024 - -0.4 125,565 + ECOLIN_RS00605 0.23 +0.5 125,565 + ECOLIN_RS00605 0.23 -0.1 125,671 + ECOLIN_RS00605 0.29 +0.2 125,732 + ECOLIN_RS00605 0.32 +0.8 125,764 + ECOLIN_RS00605 0.34 +0.5 125,907 + ECOLIN_RS00605 0.42 +0.2 125,967 + ECOLIN_RS00605 0.45 +0.2 125,990 + ECOLIN_RS00605 0.46 +0.1 126,018 - ECOLIN_RS00605 0.48 +1.1 126,174 - ECOLIN_RS00605 0.57 +0.1 126,413 + ECOLIN_RS00605 0.70 -0.8 126,413 + ECOLIN_RS00605 0.70 +0.2 126,414 - ECOLIN_RS00605 0.70 +0.1 126,414 - ECOLIN_RS00605 0.70 +0.3 126,463 + ECOLIN_RS00605 0.73 +0.9 126,493 + ECOLIN_RS00605 0.75 +0.4 126,504 - ECOLIN_RS00605 0.75 +0.8 126,504 - ECOLIN_RS00605 0.75 +0.2 126,504 - ECOLIN_RS00605 0.75 +0.3 126,546 + ECOLIN_RS00605 0.78 -0.3 126,668 - ECOLIN_RS00605 0.85 +0.8 126,822 + +0.3 126,822 + +0.6 126,859 - -0.2
Or see this region's nucleotide sequence