Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06105

Experiment: Anaerobic; Uranyl acetate 80 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS06100 and ABCV34_RS06105 are separated by 267 nucleotidesABCV34_RS06105 and ABCV34_RS06110 are separated by 51 nucleotides ABCV34_RS06100: ABCV34_RS06100 - GntR family transcriptional regulator, at 1,319,100 to 1,319,858 _RS06100 ABCV34_RS06105: ABCV34_RS06105 - hydroxyisourate hydrolase, at 1,320,126 to 1,320,479 _RS06105 ABCV34_RS06110: ABCV34_RS06110 - urate hydroxylase PuuD, at 1,320,531 to 1,321,748 _RS06110 Position (kb) 1320 1321Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1319.178 kb on + strand, within ABCV34_RS06100at 1319.178 kb on + strand, within ABCV34_RS06100at 1319.178 kb on + strand, within ABCV34_RS06100at 1319.178 kb on + strand, within ABCV34_RS06100at 1319.179 kb on - strand, within ABCV34_RS06100at 1319.179 kb on - strand, within ABCV34_RS06100at 1319.179 kb on - strand, within ABCV34_RS06100at 1319.179 kb on - strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.257 kb on + strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.258 kb on - strand, within ABCV34_RS06100at 1319.618 kb on - strand, within ABCV34_RS06100at 1319.746 kb on + strand, within ABCV34_RS06100at 1319.746 kb on + strand, within ABCV34_RS06100at 1319.747 kb on - strand, within ABCV34_RS06100at 1319.747 kb on - strand, within ABCV34_RS06100at 1319.747 kb on - strand, within ABCV34_RS06100at 1319.747 kb on - strand, within ABCV34_RS06100at 1319.790 kb on - strandat 1319.913 kb on - strandat 1319.913 kb on - strandat 1319.976 kb on + strandat 1319.976 kb on + strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.977 kb on - strandat 1319.988 kb on + strandat 1319.988 kb on + strandat 1319.988 kb on + strandat 1319.988 kb on + strandat 1320.093 kb on + strandat 1320.093 kb on + strandat 1320.104 kb on + strandat 1320.105 kb on - strandat 1320.198 kb on + strand, within ABCV34_RS06105at 1320.199 kb on - strand, within ABCV34_RS06105at 1320.306 kb on + strand, within ABCV34_RS06105at 1320.306 kb on + strand, within ABCV34_RS06105at 1320.307 kb on - strand, within ABCV34_RS06105at 1320.307 kb on - strand, within ABCV34_RS06105at 1320.307 kb on - strand, within ABCV34_RS06105at 1320.307 kb on - strand, within ABCV34_RS06105at 1320.334 kb on - strand, within ABCV34_RS06105at 1320.334 kb on - strand, within ABCV34_RS06105at 1320.334 kb on - strand, within ABCV34_RS06105at 1320.334 kb on - strand, within ABCV34_RS06105at 1320.424 kb on - strand, within ABCV34_RS06105at 1320.466 kb on - strandat 1320.489 kb on + strandat 1320.489 kb on + strandat 1320.489 kb on + strandat 1320.490 kb on - strandat 1320.490 kb on - strandat 1320.490 kb on - strandat 1320.490 kb on - strandat 1320.490 kb on - strandat 1320.490 kb on - strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.509 kb on + strandat 1320.510 kb on - strandat 1320.510 kb on - strandat 1320.510 kb on - strandat 1320.553 kb on - strandat 1320.553 kb on - strandat 1320.618 kb on + strandat 1320.618 kb on + strandat 1320.619 kb on - strandat 1320.619 kb on - strandat 1320.619 kb on - strandat 1320.619 kb on - strandat 1320.619 kb on - strandat 1320.619 kb on - strandat 1320.654 kb on - strand, within ABCV34_RS06110at 1320.720 kb on + strand, within ABCV34_RS06110at 1320.721 kb on - strand, within ABCV34_RS06110at 1320.721 kb on - strand, within ABCV34_RS06110at 1320.735 kb on + strand, within ABCV34_RS06110at 1320.735 kb on + strand, within ABCV34_RS06110at 1320.735 kb on + strand, within ABCV34_RS06110at 1320.735 kb on + strand, within ABCV34_RS06110at 1320.735 kb on + strand, within ABCV34_RS06110at 1320.736 kb on - strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.792 kb on + strand, within ABCV34_RS06110at 1320.793 kb on - strand, within ABCV34_RS06110at 1320.793 kb on - strand, within ABCV34_RS06110at 1320.793 kb on - strand, within ABCV34_RS06110at 1320.793 kb on - strand, within ABCV34_RS06110at 1320.793 kb on - strand, within ABCV34_RS06110at 1320.834 kb on + strand, within ABCV34_RS06110at 1320.834 kb on + strand, within ABCV34_RS06110at 1320.835 kb on - strand, within ABCV34_RS06110at 1320.835 kb on - strand, within ABCV34_RS06110at 1320.835 kb on - strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.855 kb on + strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.856 kb on - strand, within ABCV34_RS06110at 1320.948 kb on + strand, within ABCV34_RS06110at 1320.948 kb on + strand, within ABCV34_RS06110at 1320.948 kb on + strand, within ABCV34_RS06110at 1320.948 kb on + strand, within ABCV34_RS06110at 1320.949 kb on - strand, within ABCV34_RS06110at 1320.949 kb on - strand, within ABCV34_RS06110at 1320.949 kb on - strand, within ABCV34_RS06110at 1320.957 kb on + strand, within ABCV34_RS06110at 1320.957 kb on + strand, within ABCV34_RS06110at 1320.957 kb on + strand, within ABCV34_RS06110at 1320.957 kb on + strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1320.958 kb on - strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.242 kb on + strand, within ABCV34_RS06110at 1321.243 kb on - strand, within ABCV34_RS06110at 1321.243 kb on - strand, within ABCV34_RS06110at 1321.243 kb on - strand, within ABCV34_RS06110at 1321.243 kb on - strand, within ABCV34_RS06110at 1321.243 kb on - strand, within ABCV34_RS06110at 1321.285 kb on - strand, within ABCV34_RS06110at 1321.296 kb on + strand, within ABCV34_RS06110at 1321.296 kb on + strand, within ABCV34_RS06110at 1321.296 kb on + strand, within ABCV34_RS06110at 1321.297 kb on - strand, within ABCV34_RS06110at 1321.362 kb on + strand, within ABCV34_RS06110at 1321.363 kb on - strand, within ABCV34_RS06110at 1321.363 kb on - strand, within ABCV34_RS06110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Uranyl acetate 80 uM
remove
1,319,178 + ABCV34_RS06100 0.10 -1.3
1,319,178 + ABCV34_RS06100 0.10 -1.5
1,319,178 + ABCV34_RS06100 0.10 -1.9
1,319,178 + ABCV34_RS06100 0.10 -2.7
1,319,179 - ABCV34_RS06100 0.10 -1.9
1,319,179 - ABCV34_RS06100 0.10 -0.9
1,319,179 - ABCV34_RS06100 0.10 -0.5
1,319,179 - ABCV34_RS06100 0.10 -1.8
1,319,257 + ABCV34_RS06100 0.21 -1.5
1,319,257 + ABCV34_RS06100 0.21 -1.2
1,319,257 + ABCV34_RS06100 0.21 -2.0
1,319,257 + ABCV34_RS06100 0.21 -1.6
1,319,257 + ABCV34_RS06100 0.21 -1.5
1,319,257 + ABCV34_RS06100 0.21 -0.3
1,319,257 + ABCV34_RS06100 0.21 -3.2
1,319,257 + ABCV34_RS06100 0.21 -1.4
1,319,257 + ABCV34_RS06100 0.21 -3.1
1,319,257 + ABCV34_RS06100 0.21 -1.6
1,319,257 + ABCV34_RS06100 0.21 -1.2
1,319,257 + ABCV34_RS06100 0.21 -1.6
1,319,257 + ABCV34_RS06100 0.21 -2.7
1,319,257 + ABCV34_RS06100 0.21 -1.3
1,319,257 + ABCV34_RS06100 0.21 -2.4
1,319,258 - ABCV34_RS06100 0.21 -1.4
1,319,258 - ABCV34_RS06100 0.21 -1.4
1,319,258 - ABCV34_RS06100 0.21 -1.7
1,319,258 - ABCV34_RS06100 0.21 -1.7
1,319,258 - ABCV34_RS06100 0.21 -1.4
1,319,258 - ABCV34_RS06100 0.21 -2.4
1,319,258 - ABCV34_RS06100 0.21 -1.7
1,319,258 - ABCV34_RS06100 0.21 -2.4
1,319,258 - ABCV34_RS06100 0.21 -2.2
1,319,258 - ABCV34_RS06100 0.21 -2.1
1,319,258 - ABCV34_RS06100 0.21 -2.2
1,319,258 - ABCV34_RS06100 0.21 -1.8
1,319,258 - ABCV34_RS06100 0.21 -1.4
1,319,258 - ABCV34_RS06100 0.21 -1.6
1,319,258 - ABCV34_RS06100 0.21 -1.2
1,319,618 - ABCV34_RS06100 0.68 -1.2
1,319,746 + ABCV34_RS06100 0.85 -2.2
1,319,746 + ABCV34_RS06100 0.85 -1.9
1,319,747 - ABCV34_RS06100 0.85 -2.3
1,319,747 - ABCV34_RS06100 0.85 -1.8
1,319,747 - ABCV34_RS06100 0.85 -1.8
1,319,747 - ABCV34_RS06100 0.85 -0.8
1,319,790 - -1.9
1,319,913 - -0.2
1,319,913 - -3.4
1,319,976 + -2.9
1,319,976 + -2.5
1,319,977 - -2.0
1,319,977 - -1.9
1,319,977 - -0.7
1,319,977 - +0.1
1,319,977 - -1.1
1,319,977 - -1.2
1,319,977 - -1.5
1,319,977 - -0.2
1,319,977 - -2.7
1,319,977 - -1.4
1,319,988 + -2.5
1,319,988 + -1.3
1,319,988 + -0.6
1,319,988 + -1.2
1,320,093 + -0.7
1,320,093 + -2.3
1,320,104 + -1.1
1,320,105 - -1.5
1,320,198 + ABCV34_RS06105 0.20 +0.1
1,320,199 - ABCV34_RS06105 0.21 -2.2
1,320,306 + ABCV34_RS06105 0.51 +0.4
1,320,306 + ABCV34_RS06105 0.51 -1.2
1,320,307 - ABCV34_RS06105 0.51 -1.2
1,320,307 - ABCV34_RS06105 0.51 -1.7
1,320,307 - ABCV34_RS06105 0.51 -0.5
1,320,307 - ABCV34_RS06105 0.51 -2.5
1,320,334 - ABCV34_RS06105 0.59 -1.5
1,320,334 - ABCV34_RS06105 0.59 -3.1
1,320,334 - ABCV34_RS06105 0.59 -3.4
1,320,334 - ABCV34_RS06105 0.59 -0.7
1,320,424 - ABCV34_RS06105 0.84 -1.9
1,320,466 - -1.1
1,320,489 + -0.3
1,320,489 + -1.7
1,320,489 + -1.6
1,320,490 - -2.0
1,320,490 - -0.3
1,320,490 - -1.9
1,320,490 - -1.5
1,320,490 - -1.7
1,320,490 - -1.8
1,320,509 + -3.9
1,320,509 + -1.1
1,320,509 + -1.2
1,320,509 + -1.6
1,320,509 + -2.4
1,320,509 + -1.5
1,320,509 + +0.4
1,320,510 - -1.5
1,320,510 - -1.5
1,320,510 - -1.3
1,320,553 - -0.3
1,320,553 - -1.6
1,320,618 + -1.3
1,320,618 + -1.5
1,320,619 - -1.8
1,320,619 - -1.8
1,320,619 - -0.7
1,320,619 - -0.6
1,320,619 - -0.9
1,320,619 - -2.5
1,320,654 - ABCV34_RS06110 0.10 -1.7
1,320,720 + ABCV34_RS06110 0.16 -1.2
1,320,721 - ABCV34_RS06110 0.16 -0.9
1,320,721 - ABCV34_RS06110 0.16 -2.3
1,320,735 + ABCV34_RS06110 0.17 -0.8
1,320,735 + ABCV34_RS06110 0.17 -2.5
1,320,735 + ABCV34_RS06110 0.17 -2.2
1,320,735 + ABCV34_RS06110 0.17 -0.9
1,320,735 + ABCV34_RS06110 0.17 -0.5
1,320,736 - ABCV34_RS06110 0.17 -0.8
1,320,792 + ABCV34_RS06110 0.21 -1.6
1,320,792 + ABCV34_RS06110 0.21 -1.7
1,320,792 + ABCV34_RS06110 0.21 -2.1
1,320,792 + ABCV34_RS06110 0.21 -1.1
1,320,792 + ABCV34_RS06110 0.21 -2.7
1,320,792 + ABCV34_RS06110 0.21 -1.1
1,320,792 + ABCV34_RS06110 0.21 -0.1
1,320,792 + ABCV34_RS06110 0.21 +1.1
1,320,792 + ABCV34_RS06110 0.21 -2.2
1,320,793 - ABCV34_RS06110 0.22 -2.5
1,320,793 - ABCV34_RS06110 0.22 -2.0
1,320,793 - ABCV34_RS06110 0.22 -0.9
1,320,793 - ABCV34_RS06110 0.22 -1.4
1,320,793 - ABCV34_RS06110 0.22 -2.9
1,320,834 + ABCV34_RS06110 0.25 -0.4
1,320,834 + ABCV34_RS06110 0.25 -0.6
1,320,835 - ABCV34_RS06110 0.25 -1.6
1,320,835 - ABCV34_RS06110 0.25 -0.8
1,320,835 - ABCV34_RS06110 0.25 -1.2
1,320,855 + ABCV34_RS06110 0.27 -1.0
1,320,855 + ABCV34_RS06110 0.27 -1.8
1,320,855 + ABCV34_RS06110 0.27 +0.2
1,320,855 + ABCV34_RS06110 0.27 -2.2
1,320,855 + ABCV34_RS06110 0.27 -2.5
1,320,855 + ABCV34_RS06110 0.27 -1.6
1,320,856 - ABCV34_RS06110 0.27 -0.9
1,320,856 - ABCV34_RS06110 0.27 -1.8
1,320,856 - ABCV34_RS06110 0.27 -2.2
1,320,856 - ABCV34_RS06110 0.27 -0.2
1,320,856 - ABCV34_RS06110 0.27 -1.6
1,320,856 - ABCV34_RS06110 0.27 -0.8
1,320,856 - ABCV34_RS06110 0.27 -2.5
1,320,856 - ABCV34_RS06110 0.27 -1.1
1,320,856 - ABCV34_RS06110 0.27 -1.4
1,320,948 + ABCV34_RS06110 0.34 -1.6
1,320,948 + ABCV34_RS06110 0.34 -0.2
1,320,948 + ABCV34_RS06110 0.34 -1.7
1,320,948 + ABCV34_RS06110 0.34 -1.0
1,320,949 - ABCV34_RS06110 0.34 -1.6
1,320,949 - ABCV34_RS06110 0.34 -0.4
1,320,949 - ABCV34_RS06110 0.34 -2.3
1,320,957 + ABCV34_RS06110 0.35 -0.7
1,320,957 + ABCV34_RS06110 0.35 -1.2
1,320,957 + ABCV34_RS06110 0.35 -2.6
1,320,957 + ABCV34_RS06110 0.35 -1.1
1,320,958 - ABCV34_RS06110 0.35 -1.2
1,320,958 - ABCV34_RS06110 0.35 -1.6
1,320,958 - ABCV34_RS06110 0.35 -0.6
1,320,958 - ABCV34_RS06110 0.35 +0.1
1,320,958 - ABCV34_RS06110 0.35 -3.5
1,320,958 - ABCV34_RS06110 0.35 -0.9
1,321,242 + ABCV34_RS06110 0.58 -1.4
1,321,242 + ABCV34_RS06110 0.58 +1.7
1,321,242 + ABCV34_RS06110 0.58 -1.3
1,321,242 + ABCV34_RS06110 0.58 -1.8
1,321,242 + ABCV34_RS06110 0.58 -2.2
1,321,242 + ABCV34_RS06110 0.58 +0.1
1,321,242 + ABCV34_RS06110 0.58 -1.2
1,321,243 - ABCV34_RS06110 0.58 -1.8
1,321,243 - ABCV34_RS06110 0.58 -1.6
1,321,243 - ABCV34_RS06110 0.58 -1.7
1,321,243 - ABCV34_RS06110 0.58 -1.1
1,321,243 - ABCV34_RS06110 0.58 -2.2
1,321,285 - ABCV34_RS06110 0.62 -1.5
1,321,296 + ABCV34_RS06110 0.63 -1.4
1,321,296 + ABCV34_RS06110 0.63 -1.2
1,321,296 + ABCV34_RS06110 0.63 -1.2
1,321,297 - ABCV34_RS06110 0.63 -1.7
1,321,362 + ABCV34_RS06110 0.68 -2.5
1,321,363 - ABCV34_RS06110 0.68 -3.1
1,321,363 - ABCV34_RS06110 0.68 -1.1

Or see this region's nucleotide sequence