Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS11185

Experiment: R2A with Nickel (II) chloride 1696 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 1696 uM
2,464,960	+		LRK55_RS11180	0.26	-2.7
2,465,019	+		LRK55_RS11180	0.34	-2.0
2,465,019	+		LRK55_RS11180	0.34	-0.6
2,465,019	+		LRK55_RS11180	0.34	-1.4
2,465,020	-		LRK55_RS11180	0.34	+0.3
2,465,020	-		LRK55_RS11180	0.34	+0.3
2,465,020	-		LRK55_RS11180	0.34	-1.3
2,465,020	-		LRK55_RS11180	0.34	+0.1
2,465,020	-		LRK55_RS11180	0.34	-3.1
2,465,020	-		LRK55_RS11180	0.34	-1.7
2,465,020	-		LRK55_RS11180	0.34	-1.2
2,465,020	-		LRK55_RS11180	0.34	-2.2
2,465,020	-		LRK55_RS11180	0.34	-1.4
2,465,020	-		LRK55_RS11180	0.34	-1.0
2,465,059	+		LRK55_RS11180	0.39	-3.2
2,465,059	+		LRK55_RS11180	0.39	-1.2
2,465,059	+		LRK55_RS11180	0.39	-1.7
2,465,059	+		LRK55_RS11180	0.39	-1.7
2,465,059	+		LRK55_RS11180	0.39	-2.6
2,465,060	-		LRK55_RS11180	0.39	-1.6
2,465,060	-		LRK55_RS11180	0.39	-0.9
2,465,146	+		LRK55_RS11180	0.50	-3.3
2,465,146	+		LRK55_RS11180	0.50	-0.8
2,465,147	-		LRK55_RS11180	0.50	-1.4
2,465,268	+		LRK55_RS11180	0.66	-2.0
2,465,311	+		LRK55_RS11180	0.71	-1.1
2,465,311	+		LRK55_RS11180	0.71	-0.6
2,465,311	+		LRK55_RS11180	0.71	-1.7
2,465,365	+		LRK55_RS11180	0.78	-1.0
2,465,366	-		LRK55_RS11180	0.78	-1.4
2,465,366	-		LRK55_RS11180	0.78	-1.4
2,465,366	-		LRK55_RS11180	0.78	-0.9
2,465,398	+		LRK55_RS11180	0.82	-1.0
2,465,398	+		LRK55_RS11180	0.82	-0.6
2,465,569	-				+0.6
2,465,578	+				-0.6
2,465,612	-				+0.6
2,465,686	+				+0.0
2,465,706	+				-0.6
2,465,706	+				-0.5
2,465,706	+				+0.3
2,465,706	+				-0.6
2,465,706	+				-0.4
2,465,707	-				+0.2
2,465,707	-				+0.2
2,465,707	-				+1.2
2,465,707	-				-0.7
2,465,707	-				-2.0
2,465,826	-				-0.6
2,466,029	+				-0.6
2,466,061	+				-1.4
2,466,061	+				+0.8
2,466,061	+				+0.4
2,466,061	+				+1.2
2,466,061	+				+0.3
2,466,061	+				-0.9
2,466,061	+				+0.3
2,466,061	+				-0.6
2,466,062	-				+0.0
2,466,062	-				+0.7
2,466,062	-				-1.0
2,466,062	-				-3.4
2,466,062	-				-1.5
2,466,062	-				+0.6
2,466,062	-				+1.1
2,466,062	-				-0.9
2,466,062	-				+1.0
2,466,062	-				+0.7
2,466,151	+		LRK55_RS11185	0.11	-0.9
2,466,151	+		LRK55_RS11185	0.11	-1.4
2,466,151	+		LRK55_RS11185	0.11	-0.4
2,466,151	+		LRK55_RS11185	0.11	+0.2
2,466,151	+		LRK55_RS11185	0.11	-1.2
2,466,151	+		LRK55_RS11185	0.11	-0.9
2,466,348	+		LRK55_RS11185	0.18	-4.1
2,466,348	+		LRK55_RS11185	0.18	-1.9
2,466,348	+		LRK55_RS11185	0.18	+2.8
2,466,349	-		LRK55_RS11185	0.19	+1.4
2,466,349	-		LRK55_RS11185	0.19	-1.6
2,466,399	+		LRK55_RS11185	0.20	-1.0
2,466,400	-		LRK55_RS11185	0.20	-0.1
2,466,529	+		LRK55_RS11185	0.25	+0.8
2,466,529	+		LRK55_RS11185	0.25	+1.0
2,466,530	-		LRK55_RS11185	0.25	-1.9
2,466,546	+		LRK55_RS11185	0.26	-0.5
2,466,714	+		LRK55_RS11185	0.32	-0.3
2,466,714	+		LRK55_RS11185	0.32	-0.0
2,466,714	+		LRK55_RS11185	0.32	-0.4
2,466,714	+		LRK55_RS11185	0.32	-0.3
2,466,714	+		LRK55_RS11185	0.32	+0.3
2,466,714	+		LRK55_RS11185	0.32	-0.5
2,466,715	-		LRK55_RS11185	0.32	-3.0
2,466,715	-		LRK55_RS11185	0.32	+1.3
2,466,715	-		LRK55_RS11185	0.32	-0.6
2,466,715	-		LRK55_RS11185	0.32	+1.0
2,466,718	-		LRK55_RS11185	0.32	+0.5
2,466,867	+		LRK55_RS11185	0.38	-0.3
2,466,867	+		LRK55_RS11185	0.38	-0.8
2,466,868	-		LRK55_RS11185	0.38	+0.6
2,466,924	+		LRK55_RS11185	0.40	+0.9
2,466,966	+		LRK55_RS11185	0.41	+1.2
2,466,966	+		LRK55_RS11185	0.41	+0.5
2,466,966	+		LRK55_RS11185	0.41	+0.1
2,466,967	-		LRK55_RS11185	0.41	-1.2
2,466,967	-		LRK55_RS11185	0.41	-0.4
2,466,967	-		LRK55_RS11185	0.41	+0.3
2,466,967	-		LRK55_RS11185	0.41	-0.7
2,467,119	+		LRK55_RS11185	0.47	+0.2
2,467,119	+		LRK55_RS11185	0.47	-0.6
2,467,119	+		LRK55_RS11185	0.47	+0.8
2,467,119	+		LRK55_RS11185	0.47	-0.2
2,467,120	-		LRK55_RS11185	0.47	+1.0
2,467,120	-		LRK55_RS11185	0.47	-0.8
2,467,120	-		LRK55_RS11185	0.47	-0.2
2,467,120	-		LRK55_RS11185	0.47	+0.5
2,467,120	-		LRK55_RS11185	0.47	+0.1
2,467,120	-		LRK55_RS11185	0.47	+0.3
2,467,120	-		LRK55_RS11185	0.47	+0.8
2,467,120	-		LRK55_RS11185	0.47	-0.9
2,467,290	+		LRK55_RS11185	0.53	+0.7
2,467,290	+		LRK55_RS11185	0.53	-3.4
2,467,291	-		LRK55_RS11185	0.53	-1.4
2,467,291	-		LRK55_RS11185	0.53	+0.7
2,467,291	-		LRK55_RS11185	0.53	-0.0
2,467,294	-		LRK55_RS11185	0.54	+2.1
2,467,294	-		LRK55_RS11185	0.54	-0.8
2,467,294	-		LRK55_RS11185	0.54	-0.7
2,467,294	-		LRK55_RS11185	0.54	+0.3
2,467,294	-		LRK55_RS11185	0.54	+1.2
2,467,428	+		LRK55_RS11185	0.59	-0.4
2,467,428	+		LRK55_RS11185	0.59	+1.4
2,467,429	-		LRK55_RS11185	0.59	-1.0
2,467,429	-		LRK55_RS11185	0.59	+0.4
2,467,429	-		LRK55_RS11185	0.59	-0.5
2,467,429	-		LRK55_RS11185	0.59	-1.0
2,467,429	-		LRK55_RS11185	0.59	-0.9
2,467,429	-		LRK55_RS11185	0.59	-3.0
2,467,449	+		LRK55_RS11185	0.59	-0.2
2,467,482	+		LRK55_RS11185	0.61	-0.8
2,467,483	-		LRK55_RS11185	0.61	-0.3
2,467,483	-		LRK55_RS11185	0.61	+0.5
2,467,488	+		LRK55_RS11185	0.61	-1.3
2,467,488	+		LRK55_RS11185	0.61	-0.2
2,467,488	+		LRK55_RS11185	0.61	+0.8
2,467,488	+		LRK55_RS11185	0.61	+1.0
2,467,488	+		LRK55_RS11185	0.61	-1.6
2,467,488	+		LRK55_RS11185	0.61	+0.2
2,467,488	+		LRK55_RS11185	0.61	-1.6
2,467,489	-		LRK55_RS11185	0.61	+0.8
2,467,489	-		LRK55_RS11185	0.61	+0.5
2,467,489	-		LRK55_RS11185	0.61	-0.1
2,467,489	-		LRK55_RS11185	0.61	-0.2
2,467,489	-		LRK55_RS11185	0.61	-1.2
2,467,489	-		LRK55_RS11185	0.61	-0.3
2,467,489	-		LRK55_RS11185	0.61	-1.1
2,467,528	-		LRK55_RS11185	0.62	+0.6
2,467,557	+		LRK55_RS11185	0.63	-0.7
2,467,558	-		LRK55_RS11185	0.63	-1.4
2,467,558	-		LRK55_RS11185	0.63	-0.6
2,467,558	-		LRK55_RS11185	0.63	+0.9
2,467,558	-		LRK55_RS11185	0.63	+0.7
2,467,686	+		LRK55_RS11185	0.68	-0.7
2,467,686	+		LRK55_RS11185	0.68	-2.7
2,467,687	-		LRK55_RS11185	0.68	-0.1
2,467,687	-		LRK55_RS11185	0.68	+0.3
2,467,698	+		LRK55_RS11185	0.69	+0.3
2,467,698	+		LRK55_RS11185	0.69	-0.8
2,467,698	+		LRK55_RS11185	0.69	-0.3
2,467,698	+		LRK55_RS11185	0.69	-0.1
2,467,698	+		LRK55_RS11185	0.69	-1.0
2,467,699	-		LRK55_RS11185	0.69	-0.2
2,467,699	-		LRK55_RS11185	0.69	-0.1
2,467,734	+		LRK55_RS11185	0.70	+1.3
2,467,734	+		LRK55_RS11185	0.70	-0.6
2,467,893	+		LRK55_RS11185	0.76	-2.4
2,467,894	-		LRK55_RS11185	0.76	+0.3
2,467,894	-		LRK55_RS11185	0.76	+0.6
2,467,920	+		LRK55_RS11185	0.77	+0.1
2,467,920	+		LRK55_RS11185	0.77	-0.8
2,467,920	+		LRK55_RS11185	0.77	+1.4
2,467,921	-		LRK55_RS11185	0.77	+0.1
2,467,922	+		LRK55_RS11185	0.77	-2.4
2,467,923	-		LRK55_RS11185	0.77	-1.3
2,467,923	-		LRK55_RS11185	0.77	-0.6
2,467,956	+		LRK55_RS11185	0.78	+0.8
2,467,956	+		LRK55_RS11185	0.78	+0.8
2,467,957	-		LRK55_RS11185	0.78	+0.6
2,467,957	-		LRK55_RS11185	0.78	+0.9
2,467,996	-		LRK55_RS11185	0.80	-0.9
2,467,996	-		LRK55_RS11185	0.80	-1.0
2,468,061	+		LRK55_RS11185	0.82	+0.6
2,468,097	+		LRK55_RS11185	0.83	-1.0
2,468,169	+		LRK55_RS11185	0.86	-0.8
2,468,170	-		LRK55_RS11185	0.86	-0.0
2,468,170	-		LRK55_RS11185	0.86	+0.6
2,468,241	+		LRK55_RS11185	0.89	-1.7
2,468,241	+		LRK55_RS11185	0.89	-1.5
2,468,241	+		LRK55_RS11185	0.89	-0.3
2,468,242	-		LRK55_RS11185	0.89	-1.6
2,468,242	-		LRK55_RS11185	0.89	+2.2
2,468,259	+		LRK55_RS11185	0.89	+0.1
2,468,259	+		LRK55_RS11185	0.89	-0.9
2,468,259	+		LRK55_RS11185	0.89	+1.2
2,468,260	-		LRK55_RS11185	0.89	+0.3
2,468,260	-		LRK55_RS11185	0.89	+0.7
2,468,260	-		LRK55_RS11185	0.89	+0.5
2,468,260	-		LRK55_RS11185	0.89	-1.4
2,468,330	-				-0.8
2,468,343	+				-0.0
2,468,392	-				+4.2
2,468,457	+				+0.3
2,468,457	+				+1.1
2,468,457	+				-1.5
2,468,458	-				+0.4
2,468,458	-				-0.8
2,468,458	-				+0.3
2,468,493	+				+0.5
2,468,493	+				-1.2
2,468,493	+				-1.4
2,468,494	-				+1.4
2,468,494	-				-2.8
2,468,494	-				-0.1
2,468,494	-				-1.6
2,468,541	+				-0.8
2,468,541	+				+0.0
2,468,541	+				+1.6
2,468,542	-				-0.9
2,468,577	+				+0.5
2,468,577	+				-1.7
2,468,577	+				-1.3
2,468,577	+				+0.4
2,468,577	+				-1.3
2,468,577	+				+0.0
2,468,577	+				-0.3
2,468,577	+				-0.5
2,468,578	-				-1.2
2,468,578	-				-0.1
2,468,578	-				+0.8
2,468,578	-				+0.4
2,468,578	-				+0.9
2,468,578	-				-0.4
2,468,578	-				-0.7
2,468,670	+				-0.5
2,468,671	-				-1.9
2,468,671	-				+1.6
2,468,671	-				-0.6
2,468,671	-				-0.6
2,468,671	-				-0.5
2,468,741	+		LRK55_RS11190	0.17	-1.0
2,468,742	-		LRK55_RS11190	0.17	+0.5
2,469,120	-		LRK55_RS11190	0.65	+1.2
2,469,129	+		LRK55_RS11190	0.66	-0.3
2,469,129	+		LRK55_RS11190	0.66	-0.3
2,469,129	+		LRK55_RS11190	0.66	+1.1
2,469,129	+		LRK55_RS11190	0.66	-0.3
2,469,130	-		LRK55_RS11190	0.66	-0.2
2,469,130	-		LRK55_RS11190	0.66	+1.1
2,469,130	-		LRK55_RS11190	0.66	-2.6
2,469,130	-		LRK55_RS11190	0.66	-0.2
2,469,157	-		LRK55_RS11190	0.69	-1.6
2,469,234	+		LRK55_RS11190	0.79	+1.5
2,469,234	+		LRK55_RS11190	0.79	+0.2
2,469,234	+		LRK55_RS11190	0.79	-2.0
2,469,234	+		LRK55_RS11190	0.79	-1.2
2,469,234	+		LRK55_RS11190	0.79	+0.3
2,469,235	-		LRK55_RS11190	0.79	-1.4
2,469,235	-		LRK55_RS11190	0.79	-0.3
2,469,463	-				-0.2