Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS08925

Experiment: R2A with Nickel (II) chloride 1696 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK55_RS08920 and LRK55_RS08925 are separated by 20 nucleotidesLRK55_RS08925 and LRK55_RS08930 are separated by 141 nucleotidesLRK55_RS08930 and LRK55_RS08935 are separated by 102 nucleotidesLRK55_RS08935 and LRK55_RS08940 are separated by 54 nucleotides LRK55_RS08920: LRK55_RS08920 - glutamate-1-semialdehyde 2,1-aminomutase, at 1,957,664 to 1,958,971 _RS08920 LRK55_RS08925: LRK55_RS08925 - HAD family phosphatase, at 1,958,992 to 1,959,690 _RS08925 LRK55_RS08930: LRK55_RS08930 - tRNA-Cys, at 1,959,832 to 1,959,904 _RS08930 LRK55_RS08935: LRK55_RS08935 - redoxin domain-containing protein, at 1,960,007 to 1,960,516 _RS08935 LRK55_RS08940: LRK55_RS08940 - carboxymuconolactone decarboxylase family protein, at 1,960,571 to 1,961,113 _RS08940 Position (kb) 1958 1959 1960Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1958.074 kb on + strand, within LRK55_RS08920at 1958.075 kb on - strand, within LRK55_RS08920at 1958.075 kb on - strand, within LRK55_RS08920at 1958.075 kb on - strand, within LRK55_RS08920at 1958.075 kb on - strand, within LRK55_RS08920at 1958.090 kb on + strand, within LRK55_RS08920at 1958.090 kb on + strand, within LRK55_RS08920at 1958.091 kb on - strand, within LRK55_RS08920at 1958.207 kb on + strand, within LRK55_RS08920at 1958.207 kb on + strand, within LRK55_RS08920at 1958.207 kb on + strand, within LRK55_RS08920at 1958.207 kb on + strand, within LRK55_RS08920at 1958.207 kb on + strand, within LRK55_RS08920at 1958.208 kb on - strand, within LRK55_RS08920at 1958.208 kb on - strand, within LRK55_RS08920at 1958.208 kb on - strand, within LRK55_RS08920at 1958.401 kb on - strand, within LRK55_RS08920at 1958.511 kb on + strand, within LRK55_RS08920at 1958.511 kb on + strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.512 kb on - strand, within LRK55_RS08920at 1958.543 kb on + strand, within LRK55_RS08920at 1958.544 kb on - strand, within LRK55_RS08920at 1958.544 kb on - strand, within LRK55_RS08920at 1958.596 kb on + strand, within LRK55_RS08920at 1958.596 kb on + strand, within LRK55_RS08920at 1958.738 kb on + strand, within LRK55_RS08920at 1958.738 kb on + strand, within LRK55_RS08920at 1958.738 kb on + strand, within LRK55_RS08920at 1958.738 kb on + strand, within LRK55_RS08920at 1958.738 kb on + strand, within LRK55_RS08920at 1958.739 kb on - strand, within LRK55_RS08920at 1958.739 kb on - strand, within LRK55_RS08920at 1958.765 kb on + strand, within LRK55_RS08920at 1958.766 kb on - strand, within LRK55_RS08920at 1958.766 kb on - strand, within LRK55_RS08920at 1958.837 kb on + strand, within LRK55_RS08920at 1958.837 kb on + strand, within LRK55_RS08920at 1958.838 kb on - strand, within LRK55_RS08920at 1958.954 kb on - strandat 1958.954 kb on - strandat 1958.974 kb on + strandat 1958.974 kb on + strandat 1958.974 kb on + strandat 1958.975 kb on - strandat 1958.975 kb on - strandat 1958.975 kb on - strandat 1959.188 kb on + strand, within LRK55_RS08925at 1959.241 kb on + strand, within LRK55_RS08925at 1959.282 kb on + strand, within LRK55_RS08925at 1959.282 kb on + strand, within LRK55_RS08925at 1959.282 kb on + strand, within LRK55_RS08925at 1959.476 kb on + strand, within LRK55_RS08925at 1959.557 kb on + strand, within LRK55_RS08925at 1959.558 kb on - strand, within LRK55_RS08925at 1959.558 kb on - strand, within LRK55_RS08925at 1959.558 kb on - strand, within LRK55_RS08925at 1959.558 kb on - strand, within LRK55_RS08925at 1959.558 kb on - strand, within LRK55_RS08925at 1959.605 kb on + strand, within LRK55_RS08925at 1959.605 kb on + strand, within LRK55_RS08925at 1959.605 kb on + strand, within LRK55_RS08925at 1959.606 kb on - strand, within LRK55_RS08925at 1959.630 kb on - strandat 1959.708 kb on - strandat 1959.708 kb on - strandat 1959.708 kb on - strandat 1959.708 kb on - strandat 1959.708 kb on - strandat 1959.742 kb on - strandat 1959.779 kb on - strandat 1959.779 kb on - strandat 1959.779 kb on - strandat 1959.779 kb on - strandat 1959.907 kb on - strandat 1960.008 kb on + strandat 1960.008 kb on + strandat 1960.013 kb on + strandat 1960.014 kb on - strandat 1960.014 kb on - strandat 1960.014 kb on - strandat 1960.015 kb on - strandat 1960.106 kb on + strand, within LRK55_RS08935at 1960.106 kb on + strand, within LRK55_RS08935at 1960.106 kb on + strand, within LRK55_RS08935at 1960.107 kb on - strand, within LRK55_RS08935at 1960.107 kb on - strand, within LRK55_RS08935at 1960.110 kb on + strand, within LRK55_RS08935at 1960.159 kb on - strand, within LRK55_RS08935at 1960.238 kb on - strand, within LRK55_RS08935at 1960.335 kb on + strand, within LRK55_RS08935at 1960.632 kb on + strand, within LRK55_RS08940at 1960.632 kb on + strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.633 kb on - strand, within LRK55_RS08940at 1960.655 kb on + strand, within LRK55_RS08940at 1960.655 kb on + strand, within LRK55_RS08940at 1960.656 kb on - strand, within LRK55_RS08940at 1960.656 kb on - strand, within LRK55_RS08940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM
remove
1,958,074 + LRK55_RS08920 0.31 +0.2
1,958,075 - LRK55_RS08920 0.31 -0.3
1,958,075 - LRK55_RS08920 0.31 +0.4
1,958,075 - LRK55_RS08920 0.31 +3.4
1,958,075 - LRK55_RS08920 0.31 +1.6
1,958,090 + LRK55_RS08920 0.33 +0.4
1,958,090 + LRK55_RS08920 0.33 +0.9
1,958,091 - LRK55_RS08920 0.33 -0.4
1,958,207 + LRK55_RS08920 0.42 -2.0
1,958,207 + LRK55_RS08920 0.42 +0.1
1,958,207 + LRK55_RS08920 0.42 -0.3
1,958,207 + LRK55_RS08920 0.42 +1.3
1,958,207 + LRK55_RS08920 0.42 +0.0
1,958,208 - LRK55_RS08920 0.42 -0.7
1,958,208 - LRK55_RS08920 0.42 +1.4
1,958,208 - LRK55_RS08920 0.42 +0.8
1,958,401 - LRK55_RS08920 0.56 -0.3
1,958,511 + LRK55_RS08920 0.65 -0.7
1,958,511 + LRK55_RS08920 0.65 -1.5
1,958,512 - LRK55_RS08920 0.65 -1.2
1,958,512 - LRK55_RS08920 0.65 +0.9
1,958,512 - LRK55_RS08920 0.65 +1.1
1,958,512 - LRK55_RS08920 0.65 +0.3
1,958,512 - LRK55_RS08920 0.65 -0.1
1,958,512 - LRK55_RS08920 0.65 +0.4
1,958,512 - LRK55_RS08920 0.65 +0.1
1,958,543 + LRK55_RS08920 0.67 +0.5
1,958,544 - LRK55_RS08920 0.67 +0.0
1,958,544 - LRK55_RS08920 0.67 +1.4
1,958,596 + LRK55_RS08920 0.71 +0.7
1,958,596 + LRK55_RS08920 0.71 -0.1
1,958,738 + LRK55_RS08920 0.82 +1.5
1,958,738 + LRK55_RS08920 0.82 +0.9
1,958,738 + LRK55_RS08920 0.82 -0.2
1,958,738 + LRK55_RS08920 0.82 -0.3
1,958,738 + LRK55_RS08920 0.82 +0.6
1,958,739 - LRK55_RS08920 0.82 -0.6
1,958,739 - LRK55_RS08920 0.82 -0.8
1,958,765 + LRK55_RS08920 0.84 -0.1
1,958,766 - LRK55_RS08920 0.84 +0.6
1,958,766 - LRK55_RS08920 0.84 +0.3
1,958,837 + LRK55_RS08920 0.90 +1.1
1,958,837 + LRK55_RS08920 0.90 +0.4
1,958,838 - LRK55_RS08920 0.90 -0.6
1,958,954 - +0.1
1,958,954 - +0.0
1,958,974 + +0.5
1,958,974 + +0.6
1,958,974 + -0.1
1,958,975 - -0.3
1,958,975 - -0.6
1,958,975 - -0.1
1,959,188 + LRK55_RS08925 0.28 -1.2
1,959,241 + LRK55_RS08925 0.36 -1.2
1,959,282 + LRK55_RS08925 0.41 -0.2
1,959,282 + LRK55_RS08925 0.41 -0.0
1,959,282 + LRK55_RS08925 0.41 +2.0
1,959,476 + LRK55_RS08925 0.69 -1.3
1,959,557 + LRK55_RS08925 0.81 +0.3
1,959,558 - LRK55_RS08925 0.81 -0.1
1,959,558 - LRK55_RS08925 0.81 +1.6
1,959,558 - LRK55_RS08925 0.81 -1.0
1,959,558 - LRK55_RS08925 0.81 +0.3
1,959,558 - LRK55_RS08925 0.81 +0.3
1,959,605 + LRK55_RS08925 0.88 -2.0
1,959,605 + LRK55_RS08925 0.88 -0.3
1,959,605 + LRK55_RS08925 0.88 +0.2
1,959,606 - LRK55_RS08925 0.88 -0.8
1,959,630 - -1.1
1,959,708 - +0.3
1,959,708 - +1.7
1,959,708 - +0.3
1,959,708 - -0.9
1,959,708 - +2.0
1,959,742 - +0.9
1,959,779 - -0.2
1,959,779 - -1.9
1,959,779 - +1.7
1,959,779 - -0.4
1,959,907 - +0.1
1,960,008 + +0.3
1,960,008 + +0.4
1,960,013 + -1.4
1,960,014 - -0.1
1,960,014 - -0.2
1,960,014 - -0.1
1,960,015 - -3.8
1,960,106 + LRK55_RS08935 0.19 +0.6
1,960,106 + LRK55_RS08935 0.19 -0.1
1,960,106 + LRK55_RS08935 0.19 +1.1
1,960,107 - LRK55_RS08935 0.20 +1.6
1,960,107 - LRK55_RS08935 0.20 +0.4
1,960,110 + LRK55_RS08935 0.20 +1.1
1,960,159 - LRK55_RS08935 0.30 +0.4
1,960,238 - LRK55_RS08935 0.45 +0.4
1,960,335 + LRK55_RS08935 0.64 +0.3
1,960,632 + LRK55_RS08940 0.11 +0.9
1,960,632 + LRK55_RS08940 0.11 -3.2
1,960,633 - LRK55_RS08940 0.11 -0.6
1,960,633 - LRK55_RS08940 0.11 -1.4
1,960,633 - LRK55_RS08940 0.11 -0.3
1,960,633 - LRK55_RS08940 0.11 +1.0
1,960,633 - LRK55_RS08940 0.11 -0.4
1,960,633 - LRK55_RS08940 0.11 -0.6
1,960,655 + LRK55_RS08940 0.15 +0.6
1,960,655 + LRK55_RS08940 0.15 -1.3
1,960,656 - LRK55_RS08940 0.16 -0.7
1,960,656 - LRK55_RS08940 0.16 +0.4

Or see this region's nucleotide sequence