Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07560

Experiment: R2A with Nickel (II) chloride 1696 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 1696 uM
1,658,216	+		LRK55_RS07555	0.75	+0.7
1,658,217	-		LRK55_RS07555	0.75	+0.2
1,658,217	-		LRK55_RS07555	0.75	-0.8
1,658,217	-		LRK55_RS07555	0.75	+0.8
1,658,217	-		LRK55_RS07555	0.75	-1.8
1,658,561	+		LRK55_RS07555	0.85	+0.0
1,658,561	+		LRK55_RS07555	0.85	+0.2
1,658,561	+		LRK55_RS07555	0.85	-0.6
1,658,561	+		LRK55_RS07555	0.85	+0.8
1,658,561	+		LRK55_RS07555	0.85	-0.2
1,658,561	+		LRK55_RS07555	0.85	-2.1
1,658,562	-		LRK55_RS07555	0.85	+0.1
1,658,562	-		LRK55_RS07555	0.85	+0.2
1,658,562	-		LRK55_RS07555	0.85	-3.6
1,658,562	-		LRK55_RS07555	0.85	-0.6
1,658,562	-		LRK55_RS07555	0.85	+0.9
1,658,562	-		LRK55_RS07555	0.85	-0.7
1,658,639	+		LRK55_RS07555	0.88	-1.3
1,658,640	-		LRK55_RS07555	0.88	-0.6
1,658,939	+				-0.8
1,658,939	+				-1.3
1,658,939	+				-0.8
1,658,939	+				-1.5
1,658,939	+				-0.7
1,658,940	-				+1.1
1,658,940	-				+0.8
1,658,940	-				+0.7
1,658,940	-				+0.3
1,659,018	+				-1.6
1,659,019	-				-0.2
1,659,019	-				-1.5
1,659,019	-				-1.6
1,659,019	-				+0.5
1,659,107	+				-0.2
1,659,107	+				-1.1
1,659,108	-				-0.8
1,659,108	-				+0.7
1,659,215	-				+0.2
1,659,215	-				+0.2
1,659,256	+				+0.7
1,659,257	-				+1.7
1,659,257	-				-1.0
1,659,257	-				+0.7
1,659,257	-				-0.5
1,659,257	-				-1.9
1,659,257	-				-0.0
1,659,271	+				-1.1
1,659,271	+				-1.8
1,659,272	-				-1.3
1,659,358	+				-0.3
1,659,359	-				-0.8
1,659,443	-		LRK55_RS07560	0.13	+0.0
1,659,443	-		LRK55_RS07560	0.13	-1.3
1,659,634	+		LRK55_RS07560	0.24	-1.1
1,659,634	+		LRK55_RS07560	0.24	-0.2
1,659,634	+		LRK55_RS07560	0.24	-1.8
1,659,634	+		LRK55_RS07560	0.24	-0.6
1,659,634	+		LRK55_RS07560	0.24	-0.6
1,659,634	+		LRK55_RS07560	0.24	-1.9
1,659,635	-		LRK55_RS07560	0.24	-0.3
1,659,635	-		LRK55_RS07560	0.24	-1.6
1,659,635	-		LRK55_RS07560	0.24	-1.8
1,659,635	-		LRK55_RS07560	0.24	+0.4
1,659,635	-		LRK55_RS07560	0.24	-0.1
1,659,635	-		LRK55_RS07560	0.24	+0.8
1,659,635	-		LRK55_RS07560	0.24	-1.7
1,659,635	-		LRK55_RS07560	0.24	-2.7
1,659,635	-		LRK55_RS07560	0.24	+1.1
1,659,635	-		LRK55_RS07560	0.24	-0.6
1,659,677	-		LRK55_RS07560	0.26	-0.3
1,659,781	+		LRK55_RS07560	0.32	+1.2
1,659,782	-		LRK55_RS07560	0.32	+0.9
1,659,782	-		LRK55_RS07560	0.32	-0.4
1,659,784	+		LRK55_RS07560	0.32	-1.4
1,659,784	+		LRK55_RS07560	0.32	+0.6
1,659,784	+		LRK55_RS07560	0.32	-0.9
1,659,784	+		LRK55_RS07560	0.32	-0.4
1,659,784	+		LRK55_RS07560	0.32	-2.3
1,659,785	-		LRK55_RS07560	0.32	-0.8
1,659,785	-		LRK55_RS07560	0.32	+0.2
1,659,785	-		LRK55_RS07560	0.32	-1.7
1,659,785	-		LRK55_RS07560	0.32	+0.7
1,659,824	-		LRK55_RS07560	0.34	-1.2
1,659,859	+		LRK55_RS07560	0.36	-2.3
1,659,859	+		LRK55_RS07560	0.36	-2.6
1,659,958	+		LRK55_RS07560	0.41	-0.4
1,659,959	-		LRK55_RS07560	0.41	-1.8
1,659,959	-		LRK55_RS07560	0.41	+1.1
1,659,967	+		LRK55_RS07560	0.42	-1.5
1,659,967	+		LRK55_RS07560	0.42	+0.0
1,659,967	+		LRK55_RS07560	0.42	+0.5
1,659,967	+		LRK55_RS07560	0.42	+1.4
1,660,111	+		LRK55_RS07560	0.49	+0.6
1,660,112	-		LRK55_RS07560	0.49	-0.8
1,660,112	-		LRK55_RS07560	0.49	-1.9
1,660,112	-		LRK55_RS07560	0.49	-0.8
1,660,112	-		LRK55_RS07560	0.49	-1.9
1,660,112	-		LRK55_RS07560	0.49	-0.5
1,660,117	+		LRK55_RS07560	0.50	+0.0
1,660,141	+		LRK55_RS07560	0.51	-1.1
1,660,141	+		LRK55_RS07560	0.51	-1.1
1,660,141	+		LRK55_RS07560	0.51	+0.2
1,660,141	+		LRK55_RS07560	0.51	-1.1
1,660,141	+		LRK55_RS07560	0.51	-0.8
1,660,141	+		LRK55_RS07560	0.51	-1.4
1,660,142	-		LRK55_RS07560	0.51	-0.2
1,660,142	-		LRK55_RS07560	0.51	-1.4
1,660,142	-		LRK55_RS07560	0.51	+0.6
1,660,142	-		LRK55_RS07560	0.51	+1.2
1,660,142	-		LRK55_RS07560	0.51	+0.2
1,660,259	-		LRK55_RS07560	0.57	+1.1
1,660,259	-		LRK55_RS07560	0.57	+1.1
1,660,450	+		LRK55_RS07560	0.68	+0.2
1,660,450	+		LRK55_RS07560	0.68	-1.6
1,660,451	-		LRK55_RS07560	0.68	-0.3
1,660,451	-		LRK55_RS07560	0.68	-1.8
1,660,474	+		LRK55_RS07560	0.69	+0.9
1,660,474	+		LRK55_RS07560	0.69	-2.2
1,660,474	+		LRK55_RS07560	0.69	-0.1
1,660,474	+		LRK55_RS07560	0.69	+0.4
1,660,475	-		LRK55_RS07560	0.69	-0.9
1,660,475	-		LRK55_RS07560	0.69	-1.4
1,660,475	-		LRK55_RS07560	0.69	-1.4
1,660,475	-		LRK55_RS07560	0.69	+0.5
1,660,577	+		LRK55_RS07560	0.75	-2.2
1,660,578	-		LRK55_RS07560	0.75	-0.3
1,660,627	+		LRK55_RS07560	0.77	-0.3
1,660,627	+		LRK55_RS07560	0.77	+0.2
1,660,627	+		LRK55_RS07560	0.77	+0.1
1,660,628	-		LRK55_RS07560	0.77	+1.2
1,661,057	+				+1.9
1,661,057	+				-0.2
1,661,057	+				-1.0
1,661,057	+				-0.1
1,661,058	-				-0.3
1,661,296	-				-0.6
1,661,491	+				-2.3
1,661,492	-				-0.8
1,661,492	-				+0.3
1,661,542	+				-1.0
1,661,543	-				+0.1
1,661,602	-				+0.8
1,661,627	-				-0.4
1,661,636	+				-0.8
1,661,636	+				+0.6
1,661,637	-				-1.0
1,661,719	+				-0.9
1,661,719	+				+0.1
1,661,720	-				-1.4
1,661,720	-				-0.5
1,661,720	-				-0.7
1,661,720	-				-2.2
1,661,720	-				+0.1
1,661,801	+				-0.0
1,661,825	+				-1.7
1,661,825	+				-2.7
1,661,825	+				-1.0
1,661,825	+				+0.5
1,661,825	+				-0.5
1,661,825	+				-1.2
1,661,826	-				-2.1
1,661,829	+				+0.3
1,661,830	-				+0.0
1,661,830	-				-0.9
1,661,830	-				-0.8
1,661,830	-				-0.6
1,661,830	-				-0.7
1,661,862	-				-0.0
1,662,000	+				+0.8
1,662,039	+				-1.6
1,662,039	+				-2.4
1,662,040	-				-1.4
1,662,040	-				+0.9
1,662,043	+				-1.2
1,662,043	+				+1.6
1,662,043	+				+2.8
1,662,043	+				-0.6
1,662,043	+				+0.3
1,662,043	+				-0.6
1,662,043	+				-0.1
1,662,043	+				-1.3
1,662,043	+				-0.7
1,662,043	+				-0.5
1,662,043	+				-0.5
1,662,043	+				-0.3
1,662,043	+				-1.3
1,662,043	+				+0.4
1,662,043	+				-1.6
1,662,043	+				+0.0
1,662,043	+				-0.0
1,662,043	+				-0.7
1,662,043	+				-0.1
1,662,043	+				+0.3
1,662,044	-				-2.7
1,662,044	-				-0.6
1,662,044	-				+1.0
1,662,044	-				-0.7
1,662,044	-				-0.1
1,662,044	-				-0.3
1,662,044	-				-1.4
1,662,044	-				-0.4
1,662,044	-				-1.0
1,662,044	-				-0.2
1,662,044	-				-1.2
1,662,044	-				-0.2
1,662,044	-				-0.3
1,662,044	-				-2.0
1,662,044	-				+0.7
1,662,044	-				+1.1
1,662,044	-				-1.6
1,662,044	-				-0.6
1,662,044	-				+0.8
1,662,045	+				-0.3
1,662,045	+				-1.9
1,662,045	+				+0.2
1,662,045	+				-1.7
1,662,045	+				-0.3
1,662,045	+				-0.4
1,662,045	+				-0.0
1,662,045	+				-2.2