Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06730

Experiment: R2A with Nickel (II) chloride 1696 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 1696 uM
1,449,643	+				+0.1
1,449,643	+				+0.7
1,449,643	+				-1.3
1,449,643	+				+0.0
1,449,643	+				-1.1
1,449,643	+				+1.0
1,449,643	+				+1.1
1,449,643	+				-1.6
1,449,643	+				+1.0
1,449,643	+				-1.9
1,449,643	+				+0.5
1,449,643	+				+0.4
1,449,643	+				-0.2
1,449,643	+				-0.3
1,449,643	+				+1.0
1,449,643	+				+0.7
1,449,643	+				-0.7
1,449,643	+				-0.4
1,449,644	-				+1.1
1,449,644	-				-0.8
1,449,644	-				+0.2
1,449,644	-				+0.7
1,449,644	-				-0.2
1,449,644	-				-0.1
1,449,644	-				-0.9
1,449,644	-				-2.6
1,449,644	-				+0.2
1,449,644	-				+0.6
1,449,644	-				+0.0
1,449,644	-				-0.1
1,449,644	-				+1.9
1,449,644	-				-0.5
1,449,644	-				+0.4
1,449,644	-				+1.1
1,449,644	-				-1.7
1,449,690	-				-0.9
1,449,799	+				+0.1
1,449,800	-				+0.5
1,449,800	-				-1.6
1,449,834	-				+1.5
1,449,897	-				+0.2
1,449,897	-				+0.9
1,449,897	-				+0.0
1,449,897	-				+0.4
1,449,903	+				+0.3
1,449,904	-				+0.9
1,449,904	-				-1.3
1,449,912	+				+0.1
1,449,912	+				-0.3
1,449,912	+				+0.5
1,449,913	-				+1.8
1,449,913	-				+0.3
1,449,913	-				-1.8
1,450,029	+				+0.2
1,450,029	+				+0.5
1,450,029	+				-0.2
1,450,058	+				+0.4
1,450,137	+				-3.7
1,450,137	+				-1.3
1,450,137	+				-2.4
1,450,138	-				-2.5
1,450,138	-				-1.5
1,450,138	-				-0.0
1,450,138	-				+0.6
1,450,138	-				-0.2
1,450,312	+		LRK55_RS06725	0.40	+0.2
1,450,312	+		LRK55_RS06725	0.40	-0.2
1,450,312	+		LRK55_RS06725	0.40	+0.4
1,450,312	+		LRK55_RS06725	0.40	-0.6
1,450,312	+		LRK55_RS06725	0.40	+0.4
1,450,312	+		LRK55_RS06725	0.40	+0.3
1,450,312	+		LRK55_RS06725	0.40	-0.5
1,450,313	-		LRK55_RS06725	0.40	-0.3
1,450,313	-		LRK55_RS06725	0.40	+0.3
1,450,313	-		LRK55_RS06725	0.40	+1.0
1,450,313	-		LRK55_RS06725	0.40	-1.3
1,450,313	-		LRK55_RS06725	0.40	-1.9
1,450,313	-		LRK55_RS06725	0.40	+1.7
1,450,313	-		LRK55_RS06725	0.40	-0.6
1,450,313	-		LRK55_RS06725	0.40	+1.0
1,450,343	+		LRK55_RS06725	0.46	-1.6
1,450,343	+		LRK55_RS06725	0.46	+0.2
1,450,344	-		LRK55_RS06725	0.46	-1.5
1,450,344	-		LRK55_RS06725	0.46	-0.4
1,450,434	-		LRK55_RS06725	0.63	-0.1
1,450,442	+		LRK55_RS06725	0.65	+0.6
1,450,442	+		LRK55_RS06725	0.65	+0.4
1,450,443	-		LRK55_RS06725	0.65	+0.2
1,450,538	+		LRK55_RS06725	0.83	+1.3
1,450,538	+		LRK55_RS06725	0.83	-1.4
1,450,538	+		LRK55_RS06725	0.83	-0.2
1,450,538	+		LRK55_RS06725	0.83	-0.3
1,450,538	+		LRK55_RS06725	0.83	-0.3
1,450,538	+		LRK55_RS06725	0.83	+1.1
1,450,538	+		LRK55_RS06725	0.83	-1.1
1,450,538	+		LRK55_RS06725	0.83	+1.7
1,450,539	-		LRK55_RS06725	0.83	+0.4
1,450,539	-		LRK55_RS06725	0.83	-0.8
1,450,539	-		LRK55_RS06725	0.83	+0.2
1,450,539	-		LRK55_RS06725	0.83	+0.7
1,450,539	-		LRK55_RS06725	0.83	-2.3
1,450,539	-		LRK55_RS06725	0.83	-0.3
1,450,539	-		LRK55_RS06725	0.83	+0.4
1,450,539	-		LRK55_RS06725	0.83	-0.1
1,450,539	-		LRK55_RS06725	0.83	+1.0
1,450,548	-		LRK55_RS06725	0.85	-0.5
1,450,588	+				+0.9
1,450,592	+				+0.7
1,450,592	+				+0.6
1,450,592	+				-0.0
1,450,592	+				-3.0
1,450,592	+				+1.0
1,450,592	+				+0.0
1,450,592	+				+0.8
1,450,592	+				+0.4
1,450,592	+				-0.7
1,450,592	+				+0.2
1,450,592	+				-0.9
1,450,592	+				+0.1
1,450,592	+				-0.6
1,450,593	-				+0.6
1,450,593	-				+0.9
1,450,593	-				-0.2
1,450,593	-				-2.3
1,450,593	-				+0.1
1,450,593	-				+0.0
1,450,593	-				+0.2
1,450,593	-				+0.2
1,450,593	-				+0.3
1,450,622	+				+0.4
1,450,623	-				+0.0
1,450,623	-				+0.6
1,450,623	-				+1.0
1,450,623	-				-0.4
1,450,623	-				+0.6
1,450,795	+		LRK55_RS06730	0.22	-0.8
1,450,795	+		LRK55_RS06730	0.22	+0.5
1,450,795	+		LRK55_RS06730	0.22	+0.1
1,450,795	+		LRK55_RS06730	0.22	-0.8
1,450,795	+		LRK55_RS06730	0.22	+0.3
1,450,795	+		LRK55_RS06730	0.22	+0.3
1,450,796	-		LRK55_RS06730	0.22	-0.4
1,450,796	-		LRK55_RS06730	0.22	-1.3
1,450,796	-		LRK55_RS06730	0.22	+0.4
1,450,796	-		LRK55_RS06730	0.22	+0.7
1,450,796	-		LRK55_RS06730	0.22	+1.6
1,450,796	-		LRK55_RS06730	0.22	-0.1
1,450,796	-		LRK55_RS06730	0.22	-1.0
1,450,796	-		LRK55_RS06730	0.22	+0.3
1,450,815	+		LRK55_RS06730	0.25	-1.0
1,450,815	+		LRK55_RS06730	0.25	+0.6
1,450,815	+		LRK55_RS06730	0.25	+0.3
1,450,816	-		LRK55_RS06730	0.25	+0.2
1,450,892	+		LRK55_RS06730	0.35	+0.3
1,450,892	+		LRK55_RS06730	0.35	+0.3
1,450,892	+		LRK55_RS06730	0.35	+0.1
1,450,892	+		LRK55_RS06730	0.35	-0.6
1,450,892	+		LRK55_RS06730	0.35	+1.3
1,450,893	-		LRK55_RS06730	0.35	+0.9
1,450,893	-		LRK55_RS06730	0.35	-0.5
1,450,974	+		LRK55_RS06730	0.46	+0.3
1,450,974	+		LRK55_RS06730	0.46	-0.2
1,450,975	-		LRK55_RS06730	0.46	+0.7
1,450,975	-		LRK55_RS06730	0.46	+0.5
1,450,975	-		LRK55_RS06730	0.46	+0.2
1,450,975	-		LRK55_RS06730	0.46	+0.8
1,451,043	+		LRK55_RS06730	0.55	-0.5
1,451,043	+		LRK55_RS06730	0.55	-1.0
1,451,044	-		LRK55_RS06730	0.55	+0.9
1,451,044	-		LRK55_RS06730	0.55	+2.1
1,451,187	+		LRK55_RS06730	0.75	+0.2
1,451,187	+		LRK55_RS06730	0.75	+0.0
1,451,187	+		LRK55_RS06730	0.75	+1.4
1,451,187	+		LRK55_RS06730	0.75	-0.5
1,451,187	+		LRK55_RS06730	0.75	-0.2
1,451,187	+		LRK55_RS06730	0.75	-1.5
1,451,187	+		LRK55_RS06730	0.75	+0.1
1,451,187	+		LRK55_RS06730	0.75	-1.0
1,451,187	+		LRK55_RS06730	0.75	+0.3
1,451,188	-		LRK55_RS06730	0.75	-0.1
1,451,188	-		LRK55_RS06730	0.75	+0.4
1,451,188	-		LRK55_RS06730	0.75	-1.2
1,451,188	-		LRK55_RS06730	0.75	-0.1
1,451,188	-		LRK55_RS06730	0.75	-0.1
1,451,188	-		LRK55_RS06730	0.75	+0.6
1,451,188	-		LRK55_RS06730	0.75	+0.5
1,451,188	-		LRK55_RS06730	0.75	-0.2
1,451,188	-		LRK55_RS06730	0.75	-1.4
1,451,188	-		LRK55_RS06730	0.75	-0.5
1,451,188	-		LRK55_RS06730	0.75	-1.9
1,451,191	+		LRK55_RS06730	0.75	-1.6
1,451,191	+		LRK55_RS06730	0.75	-0.8
1,451,191	+		LRK55_RS06730	0.75	-1.4
1,451,191	+		LRK55_RS06730	0.75	-0.3
1,451,191	+		LRK55_RS06730	0.75	-0.8
1,451,191	+		LRK55_RS06730	0.75	+0.1
1,451,191	+		LRK55_RS06730	0.75	+0.9
1,451,191	+		LRK55_RS06730	0.75	-0.2
1,451,191	+		LRK55_RS06730	0.75	-2.0
1,451,191	+		LRK55_RS06730	0.75	+0.4
1,451,191	+		LRK55_RS06730	0.75	-0.6
1,451,191	+		LRK55_RS06730	0.75	-0.1
1,451,191	+		LRK55_RS06730	0.75	-0.7
1,451,191	+		LRK55_RS06730	0.75	-0.6
1,451,191	+		LRK55_RS06730	0.75	+1.6
1,451,191	+		LRK55_RS06730	0.75	-2.2
1,451,191	+		LRK55_RS06730	0.75	-0.3
1,451,191	+		LRK55_RS06730	0.75	+0.3
1,451,192	-		LRK55_RS06730	0.75	-0.6
1,451,192	-		LRK55_RS06730	0.75	-0.6
1,451,192	-		LRK55_RS06730	0.75	-0.2
1,451,192	-		LRK55_RS06730	0.75	-0.0
1,451,192	-		LRK55_RS06730	0.75	+0.3
1,451,192	-		LRK55_RS06730	0.75	-0.3
1,451,192	-		LRK55_RS06730	0.75	+0.0
1,451,192	-		LRK55_RS06730	0.75	+1.5
1,451,238	+		LRK55_RS06730	0.81	-0.5
1,451,238	+		LRK55_RS06730	0.81	-0.1
1,451,239	-		LRK55_RS06730	0.82	-0.3
1,451,239	-		LRK55_RS06730	0.82	+1.3
1,451,239	-		LRK55_RS06730	0.82	+0.5
1,451,239	-		LRK55_RS06730	0.82	+0.2
1,451,239	-		LRK55_RS06730	0.82	+0.3
1,451,483	+				+0.3
1,451,518	+				-0.5
1,451,518	+				-0.5
1,451,518	+				+1.0
1,451,518	+				+0.9
1,451,519	-				-0.6
1,451,519	-				-0.3
1,451,519	-				+0.2
1,451,519	-				-0.5
1,451,519	-				+0.4
1,451,675	+		LRK55_RS06735	0.14	+0.3
1,451,675	+		LRK55_RS06735	0.14	+1.7
1,451,676	-		LRK55_RS06735	0.15	-0.3
1,451,686	+		LRK55_RS06735	0.15	+0.1
1,451,687	-		LRK55_RS06735	0.15	+1.1
1,451,815	+		LRK55_RS06735	0.20	-1.4
1,451,815	+		LRK55_RS06735	0.20	+0.4
1,451,815	+		LRK55_RS06735	0.20	+0.7
1,451,815	+		LRK55_RS06735	0.20	+0.2
1,451,816	-		LRK55_RS06735	0.20	+0.2
1,451,816	-		LRK55_RS06735	0.20	+1.6
1,451,816	-		LRK55_RS06735	0.20	+0.4
1,451,816	-		LRK55_RS06735	0.20	+1.1
1,451,824	+		LRK55_RS06735	0.21	+1.9
1,451,824	+		LRK55_RS06735	0.21	-0.6
1,451,824	+		LRK55_RS06735	0.21	-0.1
1,451,824	+		LRK55_RS06735	0.21	-0.4
1,451,824	+		LRK55_RS06735	0.21	+0.2
1,451,824	+		LRK55_RS06735	0.21	+1.0
1,451,824	+		LRK55_RS06735	0.21	-0.7
1,451,824	+		LRK55_RS06735	0.21	+0.2
1,451,824	+		LRK55_RS06735	0.21	+0.8
1,451,825	-		LRK55_RS06735	0.21	-1.5
1,451,825	-		LRK55_RS06735	0.21	-0.5
1,451,825	-		LRK55_RS06735	0.21	-1.0
1,451,825	-		LRK55_RS06735	0.21	+1.0
1,451,825	-		LRK55_RS06735	0.21	-0.5
1,451,825	-		LRK55_RS06735	0.21	+0.7
1,451,866	+		LRK55_RS06735	0.22	+0.2
1,451,866	+		LRK55_RS06735	0.22	+1.1
1,451,866	+		LRK55_RS06735	0.22	+0.8
1,451,935	-		LRK55_RS06735	0.25	-0.4
1,451,973	+		LRK55_RS06735	0.27	+0.5
1,451,973	+		LRK55_RS06735	0.27	-1.3
1,451,974	-		LRK55_RS06735	0.27	-0.2
1,452,175	+		LRK55_RS06735	0.35	-1.4
1,452,175	+		LRK55_RS06735	0.35	+0.6
1,452,175	+		LRK55_RS06735	0.35	+0.4
1,452,175	+		LRK55_RS06735	0.35	-1.3
1,452,175	+		LRK55_RS06735	0.35	-1.8
1,452,176	-		LRK55_RS06735	0.35	-0.4
1,452,176	-		LRK55_RS06735	0.35	+0.3
1,452,176	-		LRK55_RS06735	0.35	+1.3
1,452,176	-		LRK55_RS06735	0.35	-0.4
1,452,176	-		LRK55_RS06735	0.35	+0.7
1,452,176	-		LRK55_RS06735	0.35	+0.0
1,452,176	-		LRK55_RS06735	0.35	+0.3
1,452,176	-		LRK55_RS06735	0.35	-0.5
1,452,176	-		LRK55_RS06735	0.35	+0.1
1,452,196	+		LRK55_RS06735	0.36	+0.1
1,452,196	+		LRK55_RS06735	0.36	-1.9
1,452,196	+		LRK55_RS06735	0.36	-0.8
1,452,196	+		LRK55_RS06735	0.36	+0.2
1,452,196	+		LRK55_RS06735	0.36	-2.0
1,452,197	-		LRK55_RS06735	0.36	+0.0
1,452,197	-		LRK55_RS06735	0.36	-0.4
1,452,197	-		LRK55_RS06735	0.36	-0.6
1,452,322	+		LRK55_RS06735	0.41	-0.5
1,452,322	+		LRK55_RS06735	0.41	+0.5
1,452,322	+		LRK55_RS06735	0.41	-0.9
1,452,322	+		LRK55_RS06735	0.41	+0.6
1,452,322	+		LRK55_RS06735	0.41	+0.0
1,452,322	+		LRK55_RS06735	0.41	+0.3
1,452,322	+		LRK55_RS06735	0.41	-1.2
1,452,323	-		LRK55_RS06735	0.41	+0.6
1,452,323	-		LRK55_RS06735	0.41	-2.6
1,452,323	-		LRK55_RS06735	0.41	-2.5
1,452,323	-		LRK55_RS06735	0.41	-0.0
1,452,323	-		LRK55_RS06735	0.41	-0.1