Experiment: R2A with Nickel (II) chloride 1696 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS04420 and LRK55_RS04425 are separated by 75 nucleotides LRK55_RS04425 and LRK55_RS04430 are separated by 6 nucleotides LRK55_RS04430 and LRK55_RS04435 overlap by 4 nucleotides LRK55_RS04435 and LRK55_RS04440 are separated by 136 nucleotides
LRK55_RS04420: LRK55_RS04420 - acyltransferase, at 943,454 to 944,647
_RS04420
LRK55_RS04425: LRK55_RS04425 - DUF427 domain-containing protein, at 944,723 to 944,851
_RS04425
LRK55_RS04430: LRK55_RS04430 - DUF427 domain-containing protein, at 944,858 to 944,995
_RS04430
LRK55_RS04435: LRK55_RS04435 - peptide deformylase, at 944,992 to 945,531
_RS04435
LRK55_RS04440: LRK55_RS04440 - DUF4197 domain-containing protein, at 945,668 to 946,465
_RS04440
Position (kb) 944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 943.906 kb on + strand, within LRK55_RS04420 at 943.907 kb on - strand, within LRK55_RS04420 at 943.907 kb on - strand, within LRK55_RS04420 at 943.907 kb on - strand, within LRK55_RS04420 at 943.983 kb on + strand, within LRK55_RS04420 at 943.983 kb on + strand, within LRK55_RS04420 at 943.983 kb on + strand, within LRK55_RS04420 at 943.983 kb on + strand, within LRK55_RS04420 at 943.984 kb on - strand, within LRK55_RS04420 at 943.984 kb on - strand, within LRK55_RS04420 at 943.984 kb on - strand, within LRK55_RS04420 at 943.984 kb on - strand, within LRK55_RS04420 at 943.984 kb on - strand, within LRK55_RS04420 at 944.077 kb on + strand, within LRK55_RS04420 at 944.077 kb on + strand, within LRK55_RS04420 at 944.077 kb on + strand, within LRK55_RS04420 at 944.078 kb on - strand, within LRK55_RS04420 at 944.078 kb on - strand, within LRK55_RS04420 at 944.118 kb on + strand, within LRK55_RS04420 at 944.118 kb on + strand, within LRK55_RS04420 at 944.119 kb on - strand, within LRK55_RS04420 at 944.119 kb on - strand, within LRK55_RS04420 at 944.119 kb on - strand, within LRK55_RS04420 at 944.190 kb on + strand, within LRK55_RS04420 at 944.191 kb on - strand, within LRK55_RS04420 at 944.191 kb on - strand, within LRK55_RS04420 at 944.191 kb on - strand, within LRK55_RS04420 at 944.262 kb on + strand, within LRK55_RS04420 at 944.263 kb on - strand, within LRK55_RS04420 at 944.263 kb on - strand, within LRK55_RS04420 at 944.349 kb on + strand, within LRK55_RS04420 at 944.349 kb on + strand, within LRK55_RS04420 at 944.349 kb on + strand, within LRK55_RS04420 at 944.349 kb on + strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.350 kb on - strand, within LRK55_RS04420 at 944.452 kb on - strand, within LRK55_RS04420 at 944.460 kb on + strand, within LRK55_RS04420 at 944.461 kb on - strand, within LRK55_RS04420 at 944.461 kb on - strand, within LRK55_RS04420 at 944.636 kb on + strand at 944.637 kb on - strand at 944.637 kb on - strand at 944.790 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.793 kb on + strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.794 kb on - strand, within LRK55_RS04425 at 944.838 kb on + strand, within LRK55_RS04425 at 944.841 kb on + strand at 944.842 kb on - strand at 944.842 kb on - strand at 944.842 kb on - strand at 945.039 kb on - strand at 945.191 kb on + strand, within LRK55_RS04435 at 945.192 kb on - strand, within LRK55_RS04435 at 945.301 kb on + strand, within LRK55_RS04435 at 945.786 kb on + strand, within LRK55_RS04440 at 945.786 kb on + strand, within LRK55_RS04440 at 945.786 kb on + strand, within LRK55_RS04440 at 945.787 kb on - strand, within LRK55_RS04440 at 945.787 kb on - strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.900 kb on + strand, within LRK55_RS04440 at 945.901 kb on - strand, within LRK55_RS04440 at 945.901 kb on - strand, within LRK55_RS04440 at 945.901 kb on - strand, within LRK55_RS04440 at 945.901 kb on - strand, within LRK55_RS04440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM remove 943,906 + LRK55_RS04420 0.38 -1.0 943,907 - LRK55_RS04420 0.38 +1.8 943,907 - LRK55_RS04420 0.38 +0.4 943,907 - LRK55_RS04420 0.38 +1.4 943,983 + LRK55_RS04420 0.44 -1.0 943,983 + LRK55_RS04420 0.44 -0.7 943,983 + LRK55_RS04420 0.44 +0.2 943,983 + LRK55_RS04420 0.44 -1.9 943,984 - LRK55_RS04420 0.44 -0.0 943,984 - LRK55_RS04420 0.44 +0.2 943,984 - LRK55_RS04420 0.44 +0.8 943,984 - LRK55_RS04420 0.44 +1.4 943,984 - LRK55_RS04420 0.44 +0.6 944,077 + LRK55_RS04420 0.52 +0.5 944,077 + LRK55_RS04420 0.52 -1.6 944,077 + LRK55_RS04420 0.52 -2.2 944,078 - LRK55_RS04420 0.52 -0.1 944,078 - LRK55_RS04420 0.52 -0.2 944,118 + LRK55_RS04420 0.56 -0.4 944,118 + LRK55_RS04420 0.56 -2.8 944,119 - LRK55_RS04420 0.56 -0.4 944,119 - LRK55_RS04420 0.56 +0.1 944,119 - LRK55_RS04420 0.56 +0.5 944,190 + LRK55_RS04420 0.62 -1.0 944,191 - LRK55_RS04420 0.62 +0.9 944,191 - LRK55_RS04420 0.62 +0.4 944,191 - LRK55_RS04420 0.62 -0.2 944,262 + LRK55_RS04420 0.68 +0.8 944,263 - LRK55_RS04420 0.68 -1.1 944,263 - LRK55_RS04420 0.68 -0.5 944,349 + LRK55_RS04420 0.75 -0.2 944,349 + LRK55_RS04420 0.75 -0.3 944,349 + LRK55_RS04420 0.75 +0.4 944,349 + LRK55_RS04420 0.75 +1.0 944,350 - LRK55_RS04420 0.75 +1.2 944,350 - LRK55_RS04420 0.75 -0.5 944,350 - LRK55_RS04420 0.75 +0.3 944,350 - LRK55_RS04420 0.75 -0.6 944,350 - LRK55_RS04420 0.75 +0.1 944,350 - LRK55_RS04420 0.75 +0.7 944,350 - LRK55_RS04420 0.75 -0.9 944,452 - LRK55_RS04420 0.84 -0.9 944,460 + LRK55_RS04420 0.84 +1.2 944,461 - LRK55_RS04420 0.84 -0.9 944,461 - LRK55_RS04420 0.84 +0.2 944,636 + +0.2 944,637 - +0.6 944,637 - +0.2 944,790 + LRK55_RS04425 0.52 -1.0 944,793 + LRK55_RS04425 0.54 -0.4 944,793 + LRK55_RS04425 0.54 +1.3 944,793 + LRK55_RS04425 0.54 -0.6 944,793 + LRK55_RS04425 0.54 +1.6 944,793 + LRK55_RS04425 0.54 +2.0 944,793 + LRK55_RS04425 0.54 -1.0 944,793 + LRK55_RS04425 0.54 +0.5 944,793 + LRK55_RS04425 0.54 -0.3 944,794 - LRK55_RS04425 0.55 -0.4 944,794 - LRK55_RS04425 0.55 +1.8 944,794 - LRK55_RS04425 0.55 -0.4 944,794 - LRK55_RS04425 0.55 +0.2 944,794 - LRK55_RS04425 0.55 +2.3 944,794 - LRK55_RS04425 0.55 -1.9 944,838 + LRK55_RS04425 0.89 +0.1 944,841 + +0.4 944,842 - -0.7 944,842 - -0.3 944,842 - -0.8 945,039 - -1.7 945,191 + LRK55_RS04435 0.37 -0.3 945,192 - LRK55_RS04435 0.37 -0.3 945,301 + LRK55_RS04435 0.57 +0.4 945,786 + LRK55_RS04440 0.15 +0.3 945,786 + LRK55_RS04440 0.15 +0.2 945,786 + LRK55_RS04440 0.15 -1.5 945,787 - LRK55_RS04440 0.15 +0.3 945,787 - LRK55_RS04440 0.15 +0.4 945,900 + LRK55_RS04440 0.29 -0.0 945,900 + LRK55_RS04440 0.29 -1.1 945,900 + LRK55_RS04440 0.29 -0.1 945,900 + LRK55_RS04440 0.29 -1.4 945,900 + LRK55_RS04440 0.29 -2.6 945,900 + LRK55_RS04440 0.29 -0.0 945,901 - LRK55_RS04440 0.29 -0.2 945,901 - LRK55_RS04440 0.29 +0.3 945,901 - LRK55_RS04440 0.29 +1.4 945,901 - LRK55_RS04440 0.29 -0.6
Or see this region's nucleotide sequence