Experiment: R2A with Nickel (II) chloride 1696 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS03425 and LRK55_RS03430 are separated by 81 nucleotides LRK55_RS03430 and LRK55_RS03435 are separated by 54 nucleotides LRK55_RS03435 and LRK55_RS03440 are separated by 114 nucleotides
LRK55_RS03425: LRK55_RS03425 - redox-regulated ATPase YchF, at 728,039 to 729,127
_RS03425
LRK55_RS03430: LRK55_RS03430 - aminoacyl-tRNA hydrolase, at 729,209 to 729,790
_RS03430
LRK55_RS03435: LRK55_RS03435 - 50S ribosomal protein L25/general stress protein Ctc, at 729,845 to 730,510
_RS03435
LRK55_RS03440: LRK55_RS03440 - ribose-phosphate diphosphokinase, at 730,625 to 731,566
_RS03440
Position (kb) 729
730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.286 kb on + strand, within LRK55_RS03425 at 728.286 kb on + strand, within LRK55_RS03425 at 728.286 kb on + strand, within LRK55_RS03425 at 728.287 kb on - strand, within LRK55_RS03425 at 728.287 kb on - strand, within LRK55_RS03425 at 728.520 kb on + strand, within LRK55_RS03425 at 728.520 kb on + strand, within LRK55_RS03425 at 728.520 kb on + strand, within LRK55_RS03425 at 728.521 kb on - strand, within LRK55_RS03425 at 728.521 kb on - strand, within LRK55_RS03425 at 728.521 kb on - strand, within LRK55_RS03425 at 729.204 kb on - strand at 729.211 kb on - strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.223 kb on + strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 730.619 kb on - strand at 730.619 kb on - strand at 730.619 kb on - strand at 730.619 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM remove 728,286 + LRK55_RS03425 0.23 -2.1 728,286 + LRK55_RS03425 0.23 -1.0 728,286 + LRK55_RS03425 0.23 -0.7 728,287 - LRK55_RS03425 0.23 -1.3 728,287 - LRK55_RS03425 0.23 -1.7 728,520 + LRK55_RS03425 0.44 -1.3 728,520 + LRK55_RS03425 0.44 -1.5 728,520 + LRK55_RS03425 0.44 -2.1 728,521 - LRK55_RS03425 0.44 -1.0 728,521 - LRK55_RS03425 0.44 -1.3 728,521 - LRK55_RS03425 0.44 -1.0 729,204 - +0.4 729,211 - -0.9 729,223 + +0.0 729,223 + -2.3 729,223 + -2.0 729,223 + -1.5 729,223 + -0.6 729,223 + -1.5 729,223 + -0.7 729,223 + -2.5 729,224 - +0.3 729,224 - -0.5 729,224 - -0.1 729,224 - -0.0 729,224 - +0.1 729,224 - +0.4 729,224 - +1.9 729,224 - +0.7 729,224 - +1.0 729,224 - -0.7 730,619 - -0.5 730,619 - -0.1 730,619 - +0.6 730,619 - -0.5
Or see this region's nucleotide sequence