Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02735

Experiment: R2A with Nickel (II) chloride 1696 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02725 and LRK55_RS02730 overlap by 1 nucleotidesLRK55_RS02730 and LRK55_RS02735 overlap by 4 nucleotidesLRK55_RS02735 and LRK55_RS02740 are separated by 22 nucleotides LRK55_RS02725: LRK55_RS02725 - alpha/beta fold hydrolase, at 589,286 to 590,122 _RS02725 LRK55_RS02730: LRK55_RS02730 - EamA family transporter, at 590,122 to 590,502 _RS02730 LRK55_RS02735: LRK55_RS02735 - EamA family transporter, at 590,499 to 590,906 _RS02735 LRK55_RS02740: LRK55_RS02740 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 590,929 to 592,134 _RS02740 Position (kb) 590 591Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 589.640 kb on + strand, within LRK55_RS02725at 589.745 kb on + strand, within LRK55_RS02725at 589.745 kb on + strand, within LRK55_RS02725at 589.746 kb on - strand, within LRK55_RS02725at 589.838 kb on + strand, within LRK55_RS02725at 589.838 kb on + strand, within LRK55_RS02725at 589.838 kb on + strand, within LRK55_RS02725at 589.838 kb on + strand, within LRK55_RS02725at 589.839 kb on - strand, within LRK55_RS02725at 589.856 kb on + strand, within LRK55_RS02725at 589.856 kb on + strand, within LRK55_RS02725at 589.856 kb on + strand, within LRK55_RS02725at 589.856 kb on + strand, within LRK55_RS02725at 589.857 kb on - strand, within LRK55_RS02725at 589.911 kb on + strand, within LRK55_RS02725at 589.911 kb on + strand, within LRK55_RS02725at 589.911 kb on + strand, within LRK55_RS02725at 589.911 kb on + strand, within LRK55_RS02725at 589.911 kb on + strand, within LRK55_RS02725at 589.912 kb on - strand, within LRK55_RS02725at 589.912 kb on - strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.015 kb on + strand, within LRK55_RS02725at 590.016 kb on - strand, within LRK55_RS02725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM
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589,640 + LRK55_RS02725 0.42 -1.9
589,745 + LRK55_RS02725 0.55 -2.5
589,745 + LRK55_RS02725 0.55 -2.5
589,746 - LRK55_RS02725 0.55 -2.9
589,838 + LRK55_RS02725 0.66 -3.6
589,838 + LRK55_RS02725 0.66 -4.4
589,838 + LRK55_RS02725 0.66 -2.1
589,838 + LRK55_RS02725 0.66 -2.5
589,839 - LRK55_RS02725 0.66 -0.7
589,856 + LRK55_RS02725 0.68 -2.3
589,856 + LRK55_RS02725 0.68 -0.2
589,856 + LRK55_RS02725 0.68 -2.3
589,856 + LRK55_RS02725 0.68 -1.9
589,857 - LRK55_RS02725 0.68 -1.5
589,911 + LRK55_RS02725 0.75 -0.7
589,911 + LRK55_RS02725 0.75 -0.0
589,911 + LRK55_RS02725 0.75 -1.9
589,911 + LRK55_RS02725 0.75 -3.6
589,911 + LRK55_RS02725 0.75 -1.5
589,912 - LRK55_RS02725 0.75 -2.3
589,912 - LRK55_RS02725 0.75 -2.9
590,015 + LRK55_RS02725 0.87 -0.9
590,015 + LRK55_RS02725 0.87 -1.9
590,015 + LRK55_RS02725 0.87 +1.0
590,015 + LRK55_RS02725 0.87 -0.9
590,015 + LRK55_RS02725 0.87 -1.4
590,015 + LRK55_RS02725 0.87 -1.9
590,015 + LRK55_RS02725 0.87 -1.1
590,015 + LRK55_RS02725 0.87 -0.9
590,015 + LRK55_RS02725 0.87 -2.6
590,015 + LRK55_RS02725 0.87 -2.4
590,016 - LRK55_RS02725 0.87 -1.9

Or see this region's nucleotide sequence