Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02110

Experiment: R2A with Nickel (II) chloride 1696 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02105 and LRK55_RS02110 are separated by 36 nucleotidesLRK55_RS02110 and LRK55_RS02115 overlap by 1 nucleotidesLRK55_RS02115 and LRK55_RS02120 overlap by 1 nucleotides LRK55_RS02105: LRK55_RS02105 - kynureninase, at 460,451 to 461,746 _RS02105 LRK55_RS02110: LRK55_RS02110 - ABC transporter permease, at 461,783 to 462,973 _RS02110 LRK55_RS02115: LRK55_RS02115 - efflux RND transporter periplasmic adaptor subunit, at 462,973 to 463,911 _RS02115 LRK55_RS02120: LRK55_RS02120 - ABC transporter ATP-binding protein, at 463,911 to 464,624 _RS02120 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 460.820 kb on + strand, within LRK55_RS02105at 461.048 kb on + strand, within LRK55_RS02105at 461.048 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.681 kb on + strandat 461.681 kb on + strandat 461.681 kb on + strandat 461.682 kb on - strandat 461.682 kb on - strandat 461.682 kb on - strandat 461.682 kb on - strandat 461.682 kb on - strandat 462.060 kb on + strand, within LRK55_RS02110at 462.079 kb on - strand, within LRK55_RS02110at 462.079 kb on - strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.090 kb on + strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.091 kb on - strand, within LRK55_RS02110at 462.194 kb on - strand, within LRK55_RS02110at 462.310 kb on + strand, within LRK55_RS02110at 462.310 kb on + strand, within LRK55_RS02110at 462.310 kb on + strand, within LRK55_RS02110at 462.357 kb on + strand, within LRK55_RS02110at 462.538 kb on + strand, within LRK55_RS02110at 462.539 kb on - strand, within LRK55_RS02110at 462.868 kb on - strandat 462.868 kb on - strandat 462.868 kb on - strandat 463.046 kb on + strandat 463.046 kb on + strandat 463.046 kb on + strandat 463.074 kb on + strand, within LRK55_RS02115at 463.074 kb on + strand, within LRK55_RS02115at 463.075 kb on - strand, within LRK55_RS02115at 463.075 kb on - strand, within LRK55_RS02115at 463.075 kb on - strand, within LRK55_RS02115at 463.075 kb on - strand, within LRK55_RS02115at 463.075 kb on - strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.076 kb on + strand, within LRK55_RS02115at 463.077 kb on - strand, within LRK55_RS02115at 463.077 kb on - strand, within LRK55_RS02115at 463.077 kb on - strand, within LRK55_RS02115at 463.077 kb on - strand, within LRK55_RS02115at 463.077 kb on - strand, within LRK55_RS02115at 463.148 kb on + strand, within LRK55_RS02115at 463.148 kb on + strand, within LRK55_RS02115at 463.149 kb on - strand, within LRK55_RS02115at 463.149 kb on - strand, within LRK55_RS02115at 463.149 kb on - strand, within LRK55_RS02115at 463.149 kb on - strand, within LRK55_RS02115at 463.149 kb on - strand, within LRK55_RS02115at 463.160 kb on + strand, within LRK55_RS02115at 463.161 kb on - strand, within LRK55_RS02115at 463.222 kb on - strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.271 kb on + strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.272 kb on - strand, within LRK55_RS02115at 463.387 kb on + strand, within LRK55_RS02115at 463.388 kb on - strand, within LRK55_RS02115at 463.531 kb on - strand, within LRK55_RS02115at 463.531 kb on - strand, within LRK55_RS02115at 463.535 kb on + strand, within LRK55_RS02115at 463.535 kb on + strand, within LRK55_RS02115at 463.535 kb on + strand, within LRK55_RS02115at 463.536 kb on - strand, within LRK55_RS02115at 463.763 kb on + strand, within LRK55_RS02115at 463.763 kb on + strand, within LRK55_RS02115at 463.764 kb on - strand, within LRK55_RS02115at 463.764 kb on - strand, within LRK55_RS02115at 463.764 kb on - strand, within LRK55_RS02115at 463.764 kb on - strand, within LRK55_RS02115at 463.764 kb on - strand, within LRK55_RS02115at 463.886 kb on + strandat 463.886 kb on + strandat 463.886 kb on + strandat 463.886 kb on + strandat 463.886 kb on + strandat 463.886 kb on + strandat 463.886 kb on + strandat 463.887 kb on - strandat 463.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 1696 uM
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460,820 + LRK55_RS02105 0.28 -1.1
461,048 + LRK55_RS02105 0.46 -1.3
461,048 + LRK55_RS02105 0.46 +0.3
461,198 + LRK55_RS02105 0.58 -0.5
461,198 + LRK55_RS02105 0.58 -1.2
461,198 + LRK55_RS02105 0.58 +1.0
461,199 - LRK55_RS02105 0.58 -0.4
461,199 - LRK55_RS02105 0.58 +0.4
461,199 - LRK55_RS02105 0.58 +0.3
461,199 - LRK55_RS02105 0.58 +1.6
461,199 - LRK55_RS02105 0.58 -1.2
461,204 + LRK55_RS02105 0.58 +0.4
461,204 + LRK55_RS02105 0.58 -0.3
461,204 + LRK55_RS02105 0.58 -0.7
461,204 + LRK55_RS02105 0.58 -0.1
461,204 + LRK55_RS02105 0.58 -0.9
461,205 - LRK55_RS02105 0.58 -1.0
461,205 - LRK55_RS02105 0.58 -1.3
461,205 - LRK55_RS02105 0.58 +1.5
461,205 - LRK55_RS02105 0.58 +0.7
461,205 - LRK55_RS02105 0.58 +0.3
461,205 - LRK55_RS02105 0.58 -1.9
461,681 + -0.0
461,681 + +0.3
461,681 + +1.3
461,682 - -2.6
461,682 - +0.2
461,682 - +0.5
461,682 - -0.2
461,682 - +1.6
462,060 + LRK55_RS02110 0.23 +0.5
462,079 - LRK55_RS02110 0.25 -1.9
462,079 - LRK55_RS02110 0.25 +1.0
462,090 + LRK55_RS02110 0.26 -0.5
462,090 + LRK55_RS02110 0.26 -1.9
462,090 + LRK55_RS02110 0.26 +0.5
462,090 + LRK55_RS02110 0.26 -0.1
462,090 + LRK55_RS02110 0.26 +0.9
462,090 + LRK55_RS02110 0.26 +0.9
462,090 + LRK55_RS02110 0.26 +0.4
462,090 + LRK55_RS02110 0.26 -3.2
462,090 + LRK55_RS02110 0.26 +0.6
462,090 + LRK55_RS02110 0.26 -1.7
462,090 + LRK55_RS02110 0.26 -1.7
462,090 + LRK55_RS02110 0.26 -0.5
462,091 - LRK55_RS02110 0.26 +0.4
462,091 - LRK55_RS02110 0.26 +1.1
462,091 - LRK55_RS02110 0.26 -0.4
462,091 - LRK55_RS02110 0.26 +0.5
462,091 - LRK55_RS02110 0.26 +0.7
462,091 - LRK55_RS02110 0.26 -2.3
462,091 - LRK55_RS02110 0.26 +0.8
462,091 - LRK55_RS02110 0.26 +0.4
462,091 - LRK55_RS02110 0.26 +0.2
462,194 - LRK55_RS02110 0.35 -0.1
462,310 + LRK55_RS02110 0.44 -1.5
462,310 + LRK55_RS02110 0.44 +0.2
462,310 + LRK55_RS02110 0.44 +0.2
462,357 + LRK55_RS02110 0.48 +1.5
462,538 + LRK55_RS02110 0.63 -1.9
462,539 - LRK55_RS02110 0.63 +1.5
462,868 - +1.4
462,868 - +0.1
462,868 - -0.0
463,046 + -0.2
463,046 + +0.9
463,046 + +0.7
463,074 + LRK55_RS02115 0.11 -0.2
463,074 + LRK55_RS02115 0.11 -2.3
463,075 - LRK55_RS02115 0.11 +0.5
463,075 - LRK55_RS02115 0.11 +0.7
463,075 - LRK55_RS02115 0.11 +0.0
463,075 - LRK55_RS02115 0.11 -0.8
463,075 - LRK55_RS02115 0.11 -1.0
463,076 + LRK55_RS02115 0.11 +0.3
463,076 + LRK55_RS02115 0.11 +0.4
463,076 + LRK55_RS02115 0.11 -0.1
463,076 + LRK55_RS02115 0.11 -1.2
463,076 + LRK55_RS02115 0.11 -0.3
463,076 + LRK55_RS02115 0.11 +0.6
463,077 - LRK55_RS02115 0.11 +0.4
463,077 - LRK55_RS02115 0.11 +0.6
463,077 - LRK55_RS02115 0.11 +1.3
463,077 - LRK55_RS02115 0.11 +0.3
463,077 - LRK55_RS02115 0.11 -0.6
463,148 + LRK55_RS02115 0.19 +1.3
463,148 + LRK55_RS02115 0.19 +0.8
463,149 - LRK55_RS02115 0.19 +0.7
463,149 - LRK55_RS02115 0.19 -0.1
463,149 - LRK55_RS02115 0.19 +1.0
463,149 - LRK55_RS02115 0.19 -0.1
463,149 - LRK55_RS02115 0.19 +1.9
463,160 + LRK55_RS02115 0.20 +0.3
463,161 - LRK55_RS02115 0.20 -1.1
463,222 - LRK55_RS02115 0.27 -0.9
463,271 + LRK55_RS02115 0.32 -1.0
463,271 + LRK55_RS02115 0.32 +0.5
463,271 + LRK55_RS02115 0.32 -0.2
463,271 + LRK55_RS02115 0.32 -0.3
463,271 + LRK55_RS02115 0.32 +0.2
463,271 + LRK55_RS02115 0.32 -1.2
463,271 + LRK55_RS02115 0.32 +1.7
463,271 + LRK55_RS02115 0.32 +0.6
463,271 + LRK55_RS02115 0.32 +0.8
463,271 + LRK55_RS02115 0.32 -0.0
463,271 + LRK55_RS02115 0.32 -1.7
463,272 - LRK55_RS02115 0.32 -1.2
463,272 - LRK55_RS02115 0.32 -0.7
463,272 - LRK55_RS02115 0.32 +0.4
463,272 - LRK55_RS02115 0.32 -0.5
463,272 - LRK55_RS02115 0.32 -1.0
463,272 - LRK55_RS02115 0.32 +2.1
463,387 + LRK55_RS02115 0.44 -1.3
463,388 - LRK55_RS02115 0.44 -2.5
463,531 - LRK55_RS02115 0.59 +0.6
463,531 - LRK55_RS02115 0.59 +0.2
463,535 + LRK55_RS02115 0.60 +1.3
463,535 + LRK55_RS02115 0.60 +0.5
463,535 + LRK55_RS02115 0.60 -0.0
463,536 - LRK55_RS02115 0.60 -1.0
463,763 + LRK55_RS02115 0.84 -1.7
463,763 + LRK55_RS02115 0.84 +0.5
463,764 - LRK55_RS02115 0.84 +2.5
463,764 - LRK55_RS02115 0.84 +0.3
463,764 - LRK55_RS02115 0.84 +0.5
463,764 - LRK55_RS02115 0.84 +0.6
463,764 - LRK55_RS02115 0.84 -0.6
463,886 + -0.6
463,886 + -1.0
463,886 + -0.1
463,886 + +1.6
463,886 + +0.4
463,886 + -1.5
463,886 + +0.5
463,887 - -2.2
463,887 - +0.2

Or see this region's nucleotide sequence