Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09260

Experiment: Anaerobic; Aluminium sulfate 215 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS09250 and ABCV34_RS09255 overlap by 34 nucleotidesABCV34_RS09255 and ABCV34_RS09260 overlap by 1 nucleotidesABCV34_RS09260 and ABCV34_RS09265 are separated by 85 nucleotidesABCV34_RS09265 and ABCV34_RS09270 are separated by 0 nucleotides ABCV34_RS09250: ABCV34_RS09250 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,980,343 to 1,981,350 _RS09250 ABCV34_RS09255: ABCV34_RS09255 - outer membrane lipoprotein LolB, at 1,981,317 to 1,981,961 _RS09255 ABCV34_RS09260: ABCV34_RS09260 - tetratricopeptide repeat protein, at 1,981,961 to 1,983,736 _RS09260 ABCV34_RS09265: ABCV34_RS09265 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,983,822 to 1,984,649 _RS09265 ABCV34_RS09270: ABCV34_RS09270 - RidA family protein, at 1,984,650 to 1,984,994 _RS09270 Position (kb) 1981 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1at 1982.181 kb on + strand, within ABCV34_RS09260at 1982.181 kb on + strand, within ABCV34_RS09260at 1982.182 kb on - strand, within ABCV34_RS09260at 1983.810 kb on + strandat 1983.811 kb on - strandat 1983.811 kb on - strandat 1983.996 kb on + strand, within ABCV34_RS09265at 1983.996 kb on + strand, within ABCV34_RS09265at 1983.996 kb on + strand, within ABCV34_RS09265at 1983.997 kb on - strand, within ABCV34_RS09265at 1983.997 kb on - strand, within ABCV34_RS09265at 1984.000 kb on + strand, within ABCV34_RS09265at 1984.000 kb on + strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.001 kb on - strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.621 kb on - strandat 1984.621 kb on - strandat 1984.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Aluminium sulfate 215 uM
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1,982,181 + ABCV34_RS09260 0.12 -1.1
1,982,181 + ABCV34_RS09260 0.12 -1.1
1,982,182 - ABCV34_RS09260 0.12 -1.0
1,983,810 + -1.9
1,983,811 - -2.4
1,983,811 - -1.6
1,983,996 + ABCV34_RS09265 0.21 -2.6
1,983,996 + ABCV34_RS09265 0.21 -2.1
1,983,996 + ABCV34_RS09265 0.21 -1.7
1,983,997 - ABCV34_RS09265 0.21 -1.5
1,983,997 - ABCV34_RS09265 0.21 -1.4
1,984,000 + ABCV34_RS09265 0.21 -1.5
1,984,000 + ABCV34_RS09265 0.21 -1.1
1,984,001 - ABCV34_RS09265 0.22 -1.1
1,984,001 - ABCV34_RS09265 0.22 -1.4
1,984,001 - ABCV34_RS09265 0.22 -1.3
1,984,001 - ABCV34_RS09265 0.22 -2.0
1,984,001 - ABCV34_RS09265 0.22 -2.4
1,984,001 - ABCV34_RS09265 0.22 -1.1
1,984,001 - ABCV34_RS09265 0.22 -1.4
1,984,344 + ABCV34_RS09265 0.63 -1.7
1,984,344 + ABCV34_RS09265 0.63 -1.9
1,984,344 + ABCV34_RS09265 0.63 -0.9
1,984,344 + ABCV34_RS09265 0.63 -0.1
1,984,344 + ABCV34_RS09265 0.63 -1.1
1,984,344 + ABCV34_RS09265 0.63 -2.4
1,984,344 + ABCV34_RS09265 0.63 -1.0
1,984,344 + ABCV34_RS09265 0.63 -1.1
1,984,344 + ABCV34_RS09265 0.63 -1.3
1,984,345 - ABCV34_RS09265 0.63 -1.1
1,984,345 - ABCV34_RS09265 0.63 -0.7
1,984,345 - ABCV34_RS09265 0.63 -2.3
1,984,345 - ABCV34_RS09265 0.63 -2.1
1,984,345 - ABCV34_RS09265 0.63 -0.7
1,984,345 - ABCV34_RS09265 0.63 -1.3
1,984,345 - ABCV34_RS09265 0.63 -1.5
1,984,345 - ABCV34_RS09265 0.63 -1.8
1,984,362 + ABCV34_RS09265 0.65 -1.2
1,984,362 + ABCV34_RS09265 0.65 -1.3
1,984,362 + ABCV34_RS09265 0.65 -0.1
1,984,363 - ABCV34_RS09265 0.65 -0.4
1,984,363 - ABCV34_RS09265 0.65 -1.8
1,984,363 - ABCV34_RS09265 0.65 -1.7
1,984,363 - ABCV34_RS09265 0.65 -1.2
1,984,491 + ABCV34_RS09265 0.81 -1.8
1,984,491 + ABCV34_RS09265 0.81 -1.4
1,984,491 + ABCV34_RS09265 0.81 -1.2
1,984,491 + ABCV34_RS09265 0.81 -1.1
1,984,492 - ABCV34_RS09265 0.81 -1.6
1,984,492 - ABCV34_RS09265 0.81 -2.2
1,984,492 - ABCV34_RS09265 0.81 -1.4
1,984,522 - ABCV34_RS09265 0.85 -1.5
1,984,522 - ABCV34_RS09265 0.85 -1.6
1,984,522 - ABCV34_RS09265 0.85 -1.1
1,984,522 - ABCV34_RS09265 0.85 -1.9
1,984,522 - ABCV34_RS09265 0.85 -1.1
1,984,522 - ABCV34_RS09265 0.85 -2.3
1,984,522 - ABCV34_RS09265 0.85 -1.1
1,984,545 + ABCV34_RS09265 0.87 -1.5
1,984,545 + ABCV34_RS09265 0.87 -1.3
1,984,545 + ABCV34_RS09265 0.87 -1.4
1,984,545 + ABCV34_RS09265 0.87 -1.2
1,984,545 + ABCV34_RS09265 0.87 -0.3
1,984,545 + ABCV34_RS09265 0.87 -1.8
1,984,546 - ABCV34_RS09265 0.87 -1.3
1,984,546 - ABCV34_RS09265 0.87 -1.3
1,984,546 - ABCV34_RS09265 0.87 -1.4
1,984,546 - ABCV34_RS09265 0.87 -1.3
1,984,546 - ABCV34_RS09265 0.87 -2.3
1,984,546 - ABCV34_RS09265 0.87 -1.8
1,984,546 - ABCV34_RS09265 0.87 -1.9
1,984,620 + -1.6
1,984,620 + -1.2
1,984,620 + -1.1
1,984,620 + -0.9
1,984,620 + -0.9
1,984,620 + -2.4
1,984,620 + -0.9
1,984,621 - -1.6
1,984,621 - -1.3
1,984,621 - -1.4

Or see this region's nucleotide sequence