Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16950

Experiment: R2A with nitrite 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 25 mM
3,706,341	+		LRK54_RS16940	0.80	+0.1
3,706,341	+		LRK54_RS16940	0.80	-0.1
3,706,341	+		LRK54_RS16940	0.80	+0.4
3,706,341	+		LRK54_RS16940	0.80	+0.1
3,706,341	+		LRK54_RS16940	0.80	-0.9
3,706,341	+		LRK54_RS16940	0.80	-0.8
3,706,341	+		LRK54_RS16940	0.80	-0.8
3,706,341	+		LRK54_RS16940	0.80	-0.3
3,706,341	+		LRK54_RS16940	0.80	-0.5
3,706,341	+		LRK54_RS16940	0.80	+0.1
3,706,341	+		LRK54_RS16940	0.80	+0.1
3,706,342	-		LRK54_RS16940	0.80	+0.1
3,706,380	-		LRK54_RS16940	0.86	+0.4
3,707,057	+		LRK54_RS16945	0.89	-0.6
3,707,057	+		LRK54_RS16945	0.89	-2.4
3,707,057	+		LRK54_RS16945	0.89	+1.8
3,707,057	+		LRK54_RS16945	0.89	-2.7
3,707,057	+		LRK54_RS16945	0.89	-1.9
3,707,057	+		LRK54_RS16945	0.89	-0.1
3,707,057	+		LRK54_RS16945	0.89	+0.1
3,707,057	+		LRK54_RS16945	0.89	-2.4
3,707,057	+		LRK54_RS16945	0.89	-0.3
3,707,057	+		LRK54_RS16945	0.89	+1.1
3,707,057	+		LRK54_RS16945	0.89	-2.3
3,707,057	+		LRK54_RS16945	0.89	-0.3
3,707,057	+		LRK54_RS16945	0.89	-1.8
3,707,058	-		LRK54_RS16945	0.89	-1.1
3,707,453	+		LRK54_RS16950	0.11	-0.6
3,707,453	+		LRK54_RS16950	0.11	-2.1
3,707,453	+		LRK54_RS16950	0.11	-0.8
3,707,453	+		LRK54_RS16950	0.11	-1.2
3,707,453	+		LRK54_RS16950	0.11	-0.7
3,707,454	-		LRK54_RS16950	0.11	-1.9
3,707,454	-		LRK54_RS16950	0.11	+1.1
3,707,454	-		LRK54_RS16950	0.11	-1.1
3,707,636	+		LRK54_RS16950	0.23	-1.2
3,707,636	+		LRK54_RS16950	0.23	-0.9
3,707,636	+		LRK54_RS16950	0.23	-1.8
3,707,636	+		LRK54_RS16950	0.23	-1.5
3,707,636	+		LRK54_RS16950	0.23	+0.1
3,707,636	+		LRK54_RS16950	0.23	-0.5
3,707,636	+		LRK54_RS16950	0.23	+2.7
3,707,636	+		LRK54_RS16950	0.23	-0.5
3,707,636	+		LRK54_RS16950	0.23	-1.1
3,707,636	+		LRK54_RS16950	0.23	-1.1
3,707,636	+		LRK54_RS16950	0.23	-1.1
3,707,636	+		LRK54_RS16950	0.23	-1.1
3,707,636	+		LRK54_RS16950	0.23	-1.9
3,707,636	+		LRK54_RS16950	0.23	-0.8
3,707,636	+		LRK54_RS16950	0.23	-0.0
3,707,636	+		LRK54_RS16950	0.23	-0.8
3,707,637	-		LRK54_RS16950	0.23	-1.7
3,707,637	-		LRK54_RS16950	0.23	+0.1
3,707,637	-		LRK54_RS16950	0.23	-0.5
3,707,637	-		LRK54_RS16950	0.23	-1.1
3,707,637	-		LRK54_RS16950	0.23	+0.1
3,707,637	-		LRK54_RS16950	0.23	+0.1
3,707,637	-		LRK54_RS16950	0.23	-0.1
3,707,637	-		LRK54_RS16950	0.23	-1.3
3,707,637	-		LRK54_RS16950	0.23	+3.3
3,707,637	-		LRK54_RS16950	0.23	-1.9
3,707,637	-		LRK54_RS16950	0.23	-1.5
3,707,637	-		LRK54_RS16950	0.23	-2.1
3,707,637	-		LRK54_RS16950	0.23	-0.2
3,707,637	-		LRK54_RS16950	0.23	+0.1
3,707,637	-		LRK54_RS16950	0.23	-0.6
3,707,637	-		LRK54_RS16950	0.23	+0.1
3,707,637	-		LRK54_RS16950	0.23	-0.9
3,707,637	-		LRK54_RS16950	0.23	+1.7
3,707,637	-		LRK54_RS16950	0.23	-0.8
3,707,637	-		LRK54_RS16950	0.23	-1.1
3,707,704	+		LRK54_RS16950	0.28	-1.2
3,707,704	+		LRK54_RS16950	0.28	-1.6
3,707,704	+		LRK54_RS16950	0.28	-0.1
3,707,704	+		LRK54_RS16950	0.28	-1.5
3,707,704	+		LRK54_RS16950	0.28	-0.5
3,707,704	+		LRK54_RS16950	0.28	+0.4
3,707,704	+		LRK54_RS16950	0.28	-0.9
3,707,704	+		LRK54_RS16950	0.28	+0.0
3,707,704	+		LRK54_RS16950	0.28	+0.4
3,707,704	+		LRK54_RS16950	0.28	-1.1
3,707,705	-		LRK54_RS16950	0.28	-1.1
3,707,705	-		LRK54_RS16950	0.28	-0.6
3,707,705	-		LRK54_RS16950	0.28	-0.5
3,707,705	-		LRK54_RS16950	0.28	+0.7
3,707,705	-		LRK54_RS16950	0.28	+0.2
3,707,705	-		LRK54_RS16950	0.28	-1.9
3,707,741	+		LRK54_RS16950	0.30	-0.9
3,707,741	+		LRK54_RS16950	0.30	+0.2
3,707,741	+		LRK54_RS16950	0.30	-0.7
3,707,741	+		LRK54_RS16950	0.30	-1.7
3,707,741	+		LRK54_RS16950	0.30	+0.4
3,707,741	+		LRK54_RS16950	0.30	-1.0
3,707,741	+		LRK54_RS16950	0.30	-0.5
3,707,741	+		LRK54_RS16950	0.30	-2.0
3,707,741	+		LRK54_RS16950	0.30	-1.9
3,707,741	+		LRK54_RS16950	0.30	-0.3
3,707,742	-		LRK54_RS16950	0.30	-1.3
3,707,742	-		LRK54_RS16950	0.30	-0.4
3,707,742	-		LRK54_RS16950	0.30	-0.3
3,707,742	-		LRK54_RS16950	0.30	-2.2
3,707,742	-		LRK54_RS16950	0.30	-2.3
3,707,742	-		LRK54_RS16950	0.30	+2.7
3,707,742	-		LRK54_RS16950	0.30	-1.1
3,707,742	-		LRK54_RS16950	0.30	-3.9
3,707,742	-		LRK54_RS16950	0.30	+1.7
3,707,742	-		LRK54_RS16950	0.30	-1.0
3,707,742	-		LRK54_RS16950	0.30	-2.2
3,707,742	-		LRK54_RS16950	0.30	-0.6
3,707,742	-		LRK54_RS16950	0.30	-1.0
3,707,742	-		LRK54_RS16950	0.30	-0.9
3,707,742	-		LRK54_RS16950	0.30	-2.4
3,707,742	-		LRK54_RS16950	0.30	-0.8
3,707,864	+		LRK54_RS16950	0.39	-1.3
3,707,864	+		LRK54_RS16950	0.39	-1.3
3,707,864	+		LRK54_RS16950	0.39	-0.6
3,707,864	+		LRK54_RS16950	0.39	+2.4
3,707,864	+		LRK54_RS16950	0.39	-1.4
3,707,864	+		LRK54_RS16950	0.39	+0.7
3,707,865	-		LRK54_RS16950	0.39	-1.9
3,707,865	-		LRK54_RS16950	0.39	+0.7
3,707,865	-		LRK54_RS16950	0.39	-2.5
3,707,865	-		LRK54_RS16950	0.39	+1.1
3,707,865	-		LRK54_RS16950	0.39	-1.2
3,707,865	-		LRK54_RS16950	0.39	-1.5
3,707,865	-		LRK54_RS16950	0.39	-1.1
3,707,865	-		LRK54_RS16950	0.39	+0.4
3,707,927	+		LRK54_RS16950	0.43	-1.3
3,707,927	+		LRK54_RS16950	0.43	-2.0
3,707,927	+		LRK54_RS16950	0.43	-1.3
3,707,927	+		LRK54_RS16950	0.43	-3.4
3,707,927	+		LRK54_RS16950	0.43	+0.2
3,707,927	+		LRK54_RS16950	0.43	+0.4
3,707,927	+		LRK54_RS16950	0.43	-1.7
3,707,927	+		LRK54_RS16950	0.43	-0.3
3,707,927	+		LRK54_RS16950	0.43	-2.7
3,707,927	+		LRK54_RS16950	0.43	-0.4
3,707,927	+		LRK54_RS16950	0.43	+0.4
3,707,927	+		LRK54_RS16950	0.43	-0.6
3,707,927	+		LRK54_RS16950	0.43	-0.3
3,707,927	+		LRK54_RS16950	0.43	-0.3
3,707,927	+		LRK54_RS16950	0.43	+0.4
3,707,927	+		LRK54_RS16950	0.43	+1.1
3,707,928	-		LRK54_RS16950	0.43	-0.8
3,707,928	-		LRK54_RS16950	0.43	-3.2
3,707,928	-		LRK54_RS16950	0.43	-0.5
3,707,928	-		LRK54_RS16950	0.43	-1.4
3,707,928	-		LRK54_RS16950	0.43	+0.7
3,707,928	-		LRK54_RS16950	0.43	-0.8
3,707,928	-		LRK54_RS16950	0.43	+0.1
3,707,928	-		LRK54_RS16950	0.43	+0.4
3,707,928	-		LRK54_RS16950	0.43	-0.1
3,707,928	-		LRK54_RS16950	0.43	-0.1
3,707,928	-		LRK54_RS16950	0.43	+0.6
3,707,928	-		LRK54_RS16950	0.43	-1.3
3,707,928	-		LRK54_RS16950	0.43	+0.1
3,708,029	+		LRK54_RS16950	0.50	+0.4
3,708,029	+		LRK54_RS16950	0.50	-2.6
3,708,029	+		LRK54_RS16950	0.50	+1.7
3,708,029	+		LRK54_RS16950	0.50	-2.5
3,708,029	+		LRK54_RS16950	0.50	-1.8
3,708,029	+		LRK54_RS16950	0.50	-0.5
3,708,029	+		LRK54_RS16950	0.50	-0.5
3,708,029	+		LRK54_RS16950	0.50	+1.4
3,708,029	+		LRK54_RS16950	0.50	+0.4
3,708,029	+		LRK54_RS16950	0.50	-1.5
3,708,029	+		LRK54_RS16950	0.50	+2.1
3,708,029	+		LRK54_RS16950	0.50	+0.4
3,708,029	+		LRK54_RS16950	0.50	-1.9
3,708,029	+		LRK54_RS16950	0.50	+0.4
3,708,029	+		LRK54_RS16950	0.50	-0.8
3,708,029	+		LRK54_RS16950	0.50	-1.6
3,708,029	+		LRK54_RS16950	0.50	+1.7
3,708,029	+		LRK54_RS16950	0.50	-1.8
3,708,029	+		LRK54_RS16950	0.50	-0.1
3,708,029	+		LRK54_RS16950	0.50	-1.2
3,708,029	+		LRK54_RS16950	0.50	-0.3
3,708,029	+		LRK54_RS16950	0.50	-1.4
3,708,029	+		LRK54_RS16950	0.50	+0.7
3,708,029	+		LRK54_RS16950	0.50	-0.7
3,708,029	+		LRK54_RS16950	0.50	-0.3
3,708,030	-		LRK54_RS16950	0.50	+0.7
3,708,030	-		LRK54_RS16950	0.50	-1.8
3,708,030	-		LRK54_RS16950	0.50	-1.4
3,708,030	-		LRK54_RS16950	0.50	-2.0
3,708,030	-		LRK54_RS16950	0.50	-1.3
3,708,030	-		LRK54_RS16950	0.50	-0.1
3,708,030	-		LRK54_RS16950	0.50	-1.4
3,708,030	-		LRK54_RS16950	0.50	-0.3
3,708,030	-		LRK54_RS16950	0.50	-1.8
3,708,030	-		LRK54_RS16950	0.50	+2.7
3,708,030	-		LRK54_RS16950	0.50	-1.0
3,708,030	-		LRK54_RS16950	0.50	-1.3
3,708,030	-		LRK54_RS16950	0.50	-2.7
3,708,047	+		LRK54_RS16950	0.51	-1.7
3,708,047	+		LRK54_RS16950	0.51	-0.9
3,708,047	+		LRK54_RS16950	0.51	+0.3
3,708,047	+		LRK54_RS16950	0.51	+3.7
3,708,047	+		LRK54_RS16950	0.51	+0.9
3,708,047	+		LRK54_RS16950	0.51	-0.1
3,708,047	+		LRK54_RS16950	0.51	+1.1
3,708,047	+		LRK54_RS16950	0.51	+2.7
3,708,047	+		LRK54_RS16950	0.51	-2.1
3,708,047	+		LRK54_RS16950	0.51	-0.1
3,708,047	+		LRK54_RS16950	0.51	+1.7
3,708,047	+		LRK54_RS16950	0.51	-1.4
3,708,048	-		LRK54_RS16950	0.51	-0.6
3,708,048	-		LRK54_RS16950	0.51	-1.7
3,708,048	-		LRK54_RS16950	0.51	-2.8
3,708,048	-		LRK54_RS16950	0.51	-1.3
3,708,048	-		LRK54_RS16950	0.51	+0.4
3,708,048	-		LRK54_RS16950	0.51	-0.6
3,708,048	-		LRK54_RS16950	0.51	-1.9
3,708,119	+		LRK54_RS16950	0.56	-1.3
3,708,119	+		LRK54_RS16950	0.56	-1.4
3,708,119	+		LRK54_RS16950	0.56	-0.1
3,708,119	+		LRK54_RS16950	0.56	-1.8
3,708,119	+		LRK54_RS16950	0.56	+0.7
3,708,119	+		LRK54_RS16950	0.56	-2.5
3,708,119	+		LRK54_RS16950	0.56	-0.7
3,708,119	+		LRK54_RS16950	0.56	+0.7
3,708,119	+		LRK54_RS16950	0.56	-1.0
3,708,119	+		LRK54_RS16950	0.56	-0.0
3,708,119	+		LRK54_RS16950	0.56	-0.4
3,708,119	+		LRK54_RS16950	0.56	-0.9
3,708,119	+		LRK54_RS16950	0.56	-1.3
3,708,119	+		LRK54_RS16950	0.56	-0.7
3,708,120	-		LRK54_RS16950	0.56	-0.5
3,708,120	-		LRK54_RS16950	0.56	-0.1
3,708,120	-		LRK54_RS16950	0.56	+0.4
3,708,120	-		LRK54_RS16950	0.56	+1.5
3,708,120	-		LRK54_RS16950	0.56	-1.2
3,708,120	-		LRK54_RS16950	0.56	+0.4
3,708,120	-		LRK54_RS16950	0.56	-1.5
3,708,120	-		LRK54_RS16950	0.56	-0.1
3,708,120	-		LRK54_RS16950	0.56	+0.1
3,708,120	-		LRK54_RS16950	0.56	-0.8
3,708,120	-		LRK54_RS16950	0.56	-1.4
3,708,281	+		LRK54_RS16950	0.67	+0.2
3,708,281	+		LRK54_RS16950	0.67	-1.9
3,708,281	+		LRK54_RS16950	0.67	-1.6
3,708,281	+		LRK54_RS16950	0.67	-0.3
3,708,281	+		LRK54_RS16950	0.67	-0.9
3,708,282	-		LRK54_RS16950	0.67	-0.9
3,708,282	-		LRK54_RS16950	0.67	-1.1
3,708,850	+				+0.8
3,708,851	-				-0.9
3,708,858	+				-1.3
3,709,122	+		LRK54_RS16955	0.10	-0.5
3,709,122	+		LRK54_RS16955	0.10	-1.8
3,709,122	+		LRK54_RS16955	0.10	-0.3
3,709,123	-		LRK54_RS16955	0.10	-2.3
3,709,123	-		LRK54_RS16955	0.10	-0.8
3,709,123	-		LRK54_RS16955	0.10	-0.8
3,709,123	-		LRK54_RS16955	0.10	-0.5
3,709,146	+		LRK54_RS16955	0.12	-0.9
3,709,146	+		LRK54_RS16955	0.12	-0.8
3,709,146	+		LRK54_RS16955	0.12	+0.1
3,709,146	+		LRK54_RS16955	0.12	+0.4
3,709,146	+		LRK54_RS16955	0.12	-1.2
3,709,146	+		LRK54_RS16955	0.12	-0.1
3,709,146	+		LRK54_RS16955	0.12	-1.3
3,709,146	+		LRK54_RS16955	0.12	-0.3
3,709,146	+		LRK54_RS16955	0.12	+1.1
3,709,146	+		LRK54_RS16955	0.12	+0.7
3,709,146	+		LRK54_RS16955	0.12	+1.3
3,709,147	-		LRK54_RS16955	0.12	-1.2
3,709,147	-		LRK54_RS16955	0.12	-1.4
3,709,147	-		LRK54_RS16955	0.12	-0.8
3,709,147	-		LRK54_RS16955	0.12	-0.9
3,709,147	-		LRK54_RS16955	0.12	-0.3
3,709,147	-		LRK54_RS16955	0.12	+1.1
3,709,147	-		LRK54_RS16955	0.12	-1.6
3,709,147	-		LRK54_RS16955	0.12	-0.5
3,709,147	-		LRK54_RS16955	0.12	+0.7
3,709,147	-		LRK54_RS16955	0.12	-0.5
3,709,147	-		LRK54_RS16955	0.12	-1.8
3,709,147	-		LRK54_RS16955	0.12	-0.9
3,709,147	-		LRK54_RS16955	0.12	-0.3
3,709,191	+		LRK54_RS16955	0.14	-1.8
3,709,191	+		LRK54_RS16955	0.14	-0.1
3,709,191	+		LRK54_RS16955	0.14	-0.5
3,709,192	-		LRK54_RS16955	0.14	-0.5
3,709,192	-		LRK54_RS16955	0.14	+0.4
3,709,192	-		LRK54_RS16955	0.14	+0.7
3,709,284	+		LRK54_RS16955	0.19	+0.7
3,709,284	+		LRK54_RS16955	0.19	-0.1
3,709,284	+		LRK54_RS16955	0.19	+1.1
3,709,284	+		LRK54_RS16955	0.19	-0.3
3,709,284	+		LRK54_RS16955	0.19	-2.5
3,709,284	+		LRK54_RS16955	0.19	-0.1
3,709,284	+		LRK54_RS16955	0.19	-1.5
3,709,284	+		LRK54_RS16955	0.19	+1.0
3,709,285	-		LRK54_RS16955	0.19	+0.1
3,709,285	-		LRK54_RS16955	0.19	-0.1
3,709,285	-		LRK54_RS16955	0.19	+1.1
3,709,285	-		LRK54_RS16955	0.19	+1.1
3,709,285	-		LRK54_RS16955	0.19	+0.5
3,709,285	-		LRK54_RS16955	0.19	-1.5
3,709,285	-		LRK54_RS16955	0.19	-1.7
3,709,542	+		LRK54_RS16955	0.34	-0.3
3,709,542	+		LRK54_RS16955	0.34	-0.9
3,709,542	+		LRK54_RS16955	0.34	-1.3
3,709,542	+		LRK54_RS16955	0.34	+0.1
3,709,542	+		LRK54_RS16955	0.34	-1.3
3,709,542	+		LRK54_RS16955	0.34	-1.5
3,709,542	+		LRK54_RS16955	0.34	-0.8
3,709,542	+		LRK54_RS16955	0.34	+1.1
3,709,542	+		LRK54_RS16955	0.34	-0.3
3,709,542	+		LRK54_RS16955	0.34	-1.2
3,709,542	+		LRK54_RS16955	0.34	-2.1
3,709,542	+		LRK54_RS16955	0.34	-2.6
3,709,542	+		LRK54_RS16955	0.34	-0.5
3,709,542	+		LRK54_RS16955	0.34	+0.9
3,709,542	+		LRK54_RS16955	0.34	-2.1
3,709,542	+		LRK54_RS16955	0.34	-1.6
3,709,542	+		LRK54_RS16955	0.34	+0.5
3,709,542	+		LRK54_RS16955	0.34	+1.1
3,709,542	+		LRK54_RS16955	0.34	-0.1
3,709,542	+		LRK54_RS16955	0.34	-0.0
3,709,542	+		LRK54_RS16955	0.34	-1.0
3,709,543	-		LRK54_RS16955	0.34	+1.1
3,709,543	-		LRK54_RS16955	0.34	-1.6
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	-0.5
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	-0.0
3,709,543	-		LRK54_RS16955	0.34	-1.0
3,709,543	-		LRK54_RS16955	0.34	-1.1
3,709,543	-		LRK54_RS16955	0.34	+1.7
3,709,543	-		LRK54_RS16955	0.34	-1.4
3,709,543	-		LRK54_RS16955	0.34	+1.1
3,709,543	-		LRK54_RS16955	0.34	+1.7
3,709,543	-		LRK54_RS16955	0.34	-2.5
3,709,543	-		LRK54_RS16955	0.34	+0.1
3,709,543	-		LRK54_RS16955	0.34	+1.1
3,709,543	-		LRK54_RS16955	0.34	+0.1
3,709,543	-		LRK54_RS16955	0.34	-0.8
3,709,543	-		LRK54_RS16955	0.34	+0.4
3,709,543	-		LRK54_RS16955	0.34	+0.7
3,709,543	-		LRK54_RS16955	0.34	-0.9
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3,709,543	-		LRK54_RS16955	0.34	-0.9
3,709,543	-		LRK54_RS16955	0.34	-0.0