Experiment: R2A with nitrite 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01395 and LRK54_RS01400 are separated by 111 nucleotides LRK54_RS01400 and LRK54_RS01405 are separated by 107 nucleotides LRK54_RS01405 and LRK54_RS01410 are separated by 44 nucleotides
LRK54_RS01395: LRK54_RS01395 - arsenate reductase ArsC, at 303,038 to 303,544
_RS01395
LRK54_RS01400: LRK54_RS01400 - arsenical resistance protein ArsH, at 303,656 to 304,387
_RS01400
LRK54_RS01405: LRK54_RS01405 - YdeI/OmpD-associated family protein, at 304,495 to 305,076
_RS01405
LRK54_RS01410: LRK54_RS01410 - ABC transporter ATP-binding protein/permease, at 305,121 to 306,965
_RS01410
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 303.585 kb on - strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.731 kb on + strand, within LRK54_RS01400 at 303.731 kb on + strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 304.190 kb on + strand, within LRK54_RS01400 at 304.190 kb on + strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.259 kb on + strand, within LRK54_RS01400 at 304.259 kb on + strand, within LRK54_RS01400 at 304.260 kb on - strand, within LRK54_RS01400 at 304.274 kb on + strand, within LRK54_RS01400 at 304.274 kb on + strand, within LRK54_RS01400 at 304.420 kb on + strand at 304.496 kb on + strand at 304.496 kb on + strand at 304.497 kb on - strand at 304.497 kb on - strand at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 305.105 kb on + strand at 305.105 kb on + strand at 305.105 kb on + strand at 305.186 kb on - strand at 305.492 kb on - strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.857 kb on + strand, within LRK54_RS01410 at 305.857 kb on + strand, within LRK54_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 25 mM remove 303,585 - -0.1 303,643 + -0.3 303,643 + -2.6 303,643 + -0.9 303,643 + -1.5 303,643 + +0.3 303,643 + -1.4 303,643 + +0.4 303,643 + -1.2 303,643 + -0.1 303,643 + -1.0 303,643 + +0.6 303,643 + -0.8 303,643 + +0.7 303,643 + -0.0 303,643 + -0.9 303,643 + -0.7 303,643 + -1.6 303,643 + -0.6 303,643 + -0.1 303,643 + +0.9 303,643 + -0.5 303,644 - +0.3 303,644 - +1.0 303,644 - -0.8 303,644 - -0.8 303,644 - -0.7 303,644 - +0.3 303,644 - +1.0 303,644 - -0.5 303,644 - +0.8 303,644 - -0.7 303,644 - -0.9 303,644 - -2.5 303,644 - -0.1 303,644 - -0.8 303,644 - +0.4 303,644 - +1.2 303,644 - -0.4 303,644 - +1.9 303,644 - +1.2 303,644 - -1.4 303,644 - -0.4 303,644 - -0.3 303,644 - +0.8 303,645 + +2.7 303,645 + -0.8 303,645 + -0.3 303,645 + +0.0 303,645 + -0.2 303,646 - +0.1 303,646 - +0.2 303,646 - -1.9 303,646 - -0.5 303,646 - -0.7 303,646 - +0.2 303,655 + -0.2 303,655 + -0.6 303,655 + +0.1 303,655 + +0.4 303,655 + -1.2 303,656 - -1.2 303,656 - -1.0 303,656 - -0.4 303,656 - -1.0 303,731 + LRK54_RS01400 0.10 -0.9 303,731 + LRK54_RS01400 0.10 -0.0 303,732 - LRK54_RS01400 0.10 +0.4 303,732 - LRK54_RS01400 0.10 +1.1 303,732 - LRK54_RS01400 0.10 -0.0 304,190 + LRK54_RS01400 0.73 +1.5 304,190 + LRK54_RS01400 0.73 -1.1 304,191 - LRK54_RS01400 0.73 -0.9 304,191 - LRK54_RS01400 0.73 +0.4 304,191 - LRK54_RS01400 0.73 -0.6 304,259 + LRK54_RS01400 0.82 +0.0 304,259 + LRK54_RS01400 0.82 -0.7 304,260 - LRK54_RS01400 0.83 -0.1 304,274 + LRK54_RS01400 0.84 -1.2 304,274 + LRK54_RS01400 0.84 -1.5 304,420 + -1.2 304,496 + -1.4 304,496 + -0.3 304,497 - +0.8 304,497 - -0.8 304,565 + LRK54_RS01405 0.12 -0.7 304,565 + LRK54_RS01405 0.12 +0.5 304,565 + LRK54_RS01405 0.12 -0.4 304,565 + LRK54_RS01405 0.12 +0.1 304,566 - LRK54_RS01405 0.12 -0.4 304,566 - LRK54_RS01405 0.12 +1.9 304,566 - LRK54_RS01405 0.12 +0.7 304,566 - LRK54_RS01405 0.12 +0.6 304,566 - LRK54_RS01405 0.12 -0.8 304,566 - LRK54_RS01405 0.12 -1.8 304,566 - LRK54_RS01405 0.12 +1.1 305,105 + +0.1 305,105 + -0.4 305,105 + +1.1 305,186 - -2.7 305,492 - LRK54_RS01410 0.20 -0.7 305,596 + LRK54_RS01410 0.26 -1.5 305,596 + LRK54_RS01410 0.26 +1.7 305,596 + LRK54_RS01410 0.26 -1.0 305,596 + LRK54_RS01410 0.26 -3.5 305,596 + LRK54_RS01410 0.26 -1.3 305,596 + LRK54_RS01410 0.26 -1.5 305,596 + LRK54_RS01410 0.26 -1.4 305,596 + LRK54_RS01410 0.26 -2.0 305,596 + LRK54_RS01410 0.26 -2.6 305,597 - LRK54_RS01410 0.26 -1.7 305,597 - LRK54_RS01410 0.26 -2.0 305,597 - LRK54_RS01410 0.26 -1.4 305,636 + LRK54_RS01410 0.28 -2.0 305,636 + LRK54_RS01410 0.28 -2.3 305,636 + LRK54_RS01410 0.28 -2.4 305,637 - LRK54_RS01410 0.28 -1.6 305,637 - LRK54_RS01410 0.28 -1.8 305,637 - LRK54_RS01410 0.28 -3.1 305,637 - LRK54_RS01410 0.28 -1.1 305,637 - LRK54_RS01410 0.28 -0.1 305,734 + LRK54_RS01410 0.33 -1.2 305,734 + LRK54_RS01410 0.33 -1.8 305,734 + LRK54_RS01410 0.33 -0.3 305,734 + LRK54_RS01410 0.33 -0.9 305,734 + LRK54_RS01410 0.33 -0.3 305,734 + LRK54_RS01410 0.33 -3.4 305,735 - LRK54_RS01410 0.33 -0.3 305,735 - LRK54_RS01410 0.33 -2.9 305,735 - LRK54_RS01410 0.33 -1.4 305,735 - LRK54_RS01410 0.33 -0.9 305,735 - LRK54_RS01410 0.33 -0.3 305,735 - LRK54_RS01410 0.33 +0.1 305,857 + LRK54_RS01410 0.40 -1.6 305,857 + LRK54_RS01410 0.40 -1.1
Or see this region's nucleotide sequence