Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3661

Experiment: Spectinomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3659 and Ga0059261_3660 overlap by 1 nucleotidesGa0059261_3660 and Ga0059261_3661 overlap by 4 nucleotidesGa0059261_3661 and Ga0059261_3662 overlap by 4 nucleotidesGa0059261_3662 and Ga0059261_3663 are separated by 80 nucleotides Ga0059261_3659: Ga0059261_3659 - PqqD family protein, HPr-rel-A system, at 3,773,491 to 3,773,760 _3659 Ga0059261_3660: Ga0059261_3660 - HprK-related kinase A, at 3,773,760 to 3,774,623 _3660 Ga0059261_3661: Ga0059261_3661 - Uncharacterised nucleotidyltransferase, at 3,774,620 to 3,775,618 _3661 Ga0059261_3662: Ga0059261_3662 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,775,615 to 3,776,295 _3662 Ga0059261_3663: Ga0059261_3663 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 3,776,376 to 3,777,731 _3663 Position (kb) 3774 3775 3776Strain fitness (log2 ratio) -1 0 1 2at 3773.640 kb on + strand, within Ga0059261_3659at 3773.640 kb on + strand, within Ga0059261_3659at 3773.641 kb on - strand, within Ga0059261_3659at 3773.850 kb on + strand, within Ga0059261_3660at 3773.850 kb on + strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.851 kb on - strand, within Ga0059261_3660at 3773.860 kb on - strand, within Ga0059261_3660at 3773.860 kb on - strand, within Ga0059261_3660at 3773.967 kb on - strand, within Ga0059261_3660at 3774.131 kb on + strand, within Ga0059261_3660at 3774.132 kb on - strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.220 kb on + strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.221 kb on - strand, within Ga0059261_3660at 3774.489 kb on + strand, within Ga0059261_3660at 3774.489 kb on + strand, within Ga0059261_3660at 3774.489 kb on + strand, within Ga0059261_3660at 3774.489 kb on + strand, within Ga0059261_3660at 3774.489 kb on + strand, within Ga0059261_3660at 3774.490 kb on - strand, within Ga0059261_3660at 3774.490 kb on - strand, within Ga0059261_3660at 3774.490 kb on - strand, within Ga0059261_3660at 3774.490 kb on - strand, within Ga0059261_3660at 3775.043 kb on + strand, within Ga0059261_3661at 3775.044 kb on - strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.055 kb on + strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.056 kb on - strand, within Ga0059261_3661at 3775.059 kb on - strand, within Ga0059261_3661at 3775.404 kb on + strand, within Ga0059261_3661at 3775.404 kb on + strand, within Ga0059261_3661at 3775.405 kb on - strand, within Ga0059261_3661at 3775.405 kb on - strand, within Ga0059261_3661at 3775.405 kb on - strand, within Ga0059261_3661at 3775.419 kb on - strand, within Ga0059261_3661at 3775.419 kb on - strand, within Ga0059261_3661at 3775.419 kb on - strand, within Ga0059261_3661at 3775.419 kb on - strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.463 kb on + strand, within Ga0059261_3661at 3775.464 kb on - strand, within Ga0059261_3661at 3775.464 kb on - strand, within Ga0059261_3661at 3775.533 kb on - strandat 3775.533 kb on - strandat 3775.533 kb on - strandat 3775.612 kb on + strandat 3775.613 kb on - strandat 3775.613 kb on - strandat 3775.613 kb on - strandat 3775.613 kb on - strandat 3775.613 kb on - strandat 3775.613 kb on - strandat 3775.616 kb on + strandat 3775.616 kb on + strandat 3775.616 kb on + strandat 3775.616 kb on + strandat 3775.617 kb on - strandat 3775.617 kb on - strandat 3775.617 kb on - strandat 3775.617 kb on - strandat 3775.662 kb on - strandat 3775.662 kb on - strandat 3775.687 kb on + strand, within Ga0059261_3662at 3775.688 kb on - strand, within Ga0059261_3662at 3775.688 kb on - strand, within Ga0059261_3662at 3775.688 kb on - strand, within Ga0059261_3662at 3775.688 kb on - strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.048 kb on + strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.049 kb on - strand, within Ga0059261_3662at 3776.051 kb on + strand, within Ga0059261_3662at 3776.051 kb on + strand, within Ga0059261_3662at 3776.051 kb on + strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.052 kb on - strand, within Ga0059261_3662at 3776.069 kb on + strand, within Ga0059261_3662at 3776.096 kb on + strand, within Ga0059261_3662at 3776.097 kb on - strand, within Ga0059261_3662at 3776.097 kb on - strand, within Ga0059261_3662at 3776.097 kb on - strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strandat 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.130 kb on + strand, within Ga0059261_3662at 3776.131 kb on + strand, within Ga0059261_3662at 3776.131 kb on - strandat 3776.131 kb on - strand, within Ga0059261_3662at 3776.131 kb on - strand, within Ga0059261_3662at 3776.131 kb on - strand, within Ga0059261_3662at 3776.276 kb on + strandat 3776.319 kb on + strandat 3776.319 kb on + strandat 3776.320 kb on - strandat 3776.333 kb on + strandat 3776.333 kb on + strandat 3776.333 kb on + strandat 3776.333 kb on + strandat 3776.333 kb on + strandat 3776.333 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 2 mg/ml
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3,773,640 + Ga0059261_3659 0.55 -0.5
3,773,640 + Ga0059261_3659 0.55 +0.2
3,773,641 - Ga0059261_3659 0.56 +1.4
3,773,850 + Ga0059261_3660 0.10 -0.0
3,773,850 + Ga0059261_3660 0.10 +0.8
3,773,851 - Ga0059261_3660 0.11 +0.2
3,773,851 - Ga0059261_3660 0.11 +0.6
3,773,851 - Ga0059261_3660 0.11 +0.2
3,773,851 - Ga0059261_3660 0.11 -0.7
3,773,860 - Ga0059261_3660 0.12 -0.7
3,773,860 - Ga0059261_3660 0.12 +0.3
3,773,967 - Ga0059261_3660 0.24 +0.9
3,774,131 + Ga0059261_3660 0.43 +0.5
3,774,132 - Ga0059261_3660 0.43 +1.4
3,774,220 + Ga0059261_3660 0.53 +0.0
3,774,220 + Ga0059261_3660 0.53 +1.1
3,774,220 + Ga0059261_3660 0.53 +0.7
3,774,220 + Ga0059261_3660 0.53 -0.8
3,774,220 + Ga0059261_3660 0.53 +0.2
3,774,220 + Ga0059261_3660 0.53 -0.1
3,774,220 + Ga0059261_3660 0.53 +0.4
3,774,220 + Ga0059261_3660 0.53 -0.1
3,774,220 + Ga0059261_3660 0.53 +0.0
3,774,220 + Ga0059261_3660 0.53 -0.1
3,774,221 - Ga0059261_3660 0.53 +1.1
3,774,221 - Ga0059261_3660 0.53 +0.7
3,774,221 - Ga0059261_3660 0.53 -0.0
3,774,221 - Ga0059261_3660 0.53 +0.3
3,774,221 - Ga0059261_3660 0.53 +0.2
3,774,221 - Ga0059261_3660 0.53 +0.8
3,774,221 - Ga0059261_3660 0.53 +0.7
3,774,221 - Ga0059261_3660 0.53 +0.4
3,774,221 - Ga0059261_3660 0.53 +0.1
3,774,221 - Ga0059261_3660 0.53 -0.1
3,774,221 - Ga0059261_3660 0.53 +1.1
3,774,221 - Ga0059261_3660 0.53 +0.8
3,774,489 + Ga0059261_3660 0.84 +1.1
3,774,489 + Ga0059261_3660 0.84 +0.3
3,774,489 + Ga0059261_3660 0.84 +0.4
3,774,489 + Ga0059261_3660 0.84 +0.7
3,774,489 + Ga0059261_3660 0.84 +0.6
3,774,490 - Ga0059261_3660 0.84 -0.2
3,774,490 - Ga0059261_3660 0.84 +0.5
3,774,490 - Ga0059261_3660 0.84 +1.1
3,774,490 - Ga0059261_3660 0.84 +1.1
3,775,043 + Ga0059261_3661 0.42 -1.5
3,775,044 - Ga0059261_3661 0.42 +0.4
3,775,055 + Ga0059261_3661 0.44 -0.8
3,775,055 + Ga0059261_3661 0.44 +0.2
3,775,055 + Ga0059261_3661 0.44 +0.9
3,775,055 + Ga0059261_3661 0.44 +0.8
3,775,055 + Ga0059261_3661 0.44 -0.1
3,775,055 + Ga0059261_3661 0.44 +1.0
3,775,055 + Ga0059261_3661 0.44 +1.2
3,775,055 + Ga0059261_3661 0.44 -0.1
3,775,055 + Ga0059261_3661 0.44 +0.1
3,775,055 + Ga0059261_3661 0.44 +0.5
3,775,055 + Ga0059261_3661 0.44 -0.8
3,775,056 - Ga0059261_3661 0.44 +1.1
3,775,056 - Ga0059261_3661 0.44 +0.4
3,775,056 - Ga0059261_3661 0.44 -0.0
3,775,056 - Ga0059261_3661 0.44 +0.9
3,775,056 - Ga0059261_3661 0.44 +0.1
3,775,056 - Ga0059261_3661 0.44 +0.4
3,775,056 - Ga0059261_3661 0.44 +0.5
3,775,056 - Ga0059261_3661 0.44 +0.2
3,775,056 - Ga0059261_3661 0.44 -0.5
3,775,059 - Ga0059261_3661 0.44 +0.8
3,775,404 + Ga0059261_3661 0.78 +0.1
3,775,404 + Ga0059261_3661 0.78 +0.1
3,775,405 - Ga0059261_3661 0.79 +0.9
3,775,405 - Ga0059261_3661 0.79 +0.0
3,775,405 - Ga0059261_3661 0.79 +0.3
3,775,419 - Ga0059261_3661 0.80 +0.8
3,775,419 - Ga0059261_3661 0.80 +0.5
3,775,419 - Ga0059261_3661 0.80 +0.3
3,775,419 - Ga0059261_3661 0.80 +0.8
3,775,463 + Ga0059261_3661 0.84 +0.6
3,775,463 + Ga0059261_3661 0.84 +0.2
3,775,463 + Ga0059261_3661 0.84 +0.5
3,775,463 + Ga0059261_3661 0.84 +0.5
3,775,463 + Ga0059261_3661 0.84 +0.6
3,775,463 + Ga0059261_3661 0.84 +0.9
3,775,463 + Ga0059261_3661 0.84 +0.5
3,775,463 + Ga0059261_3661 0.84 +0.1
3,775,463 + Ga0059261_3661 0.84 -0.0
3,775,464 - Ga0059261_3661 0.84 +0.5
3,775,464 - Ga0059261_3661 0.84 -0.3
3,775,533 - -0.9
3,775,533 - +0.3
3,775,533 - -0.0
3,775,612 + +0.8
3,775,613 - -1.5
3,775,613 - +0.7
3,775,613 - -0.1
3,775,613 - +0.3
3,775,613 - -0.2
3,775,613 - +0.2
3,775,616 + +0.7
3,775,616 + +1.1
3,775,616 + +0.0
3,775,616 + -0.6
3,775,617 - -0.5
3,775,617 - -0.3
3,775,617 - -0.5
3,775,617 - +0.3
3,775,662 - -0.9
3,775,662 - -1.6
3,775,687 + Ga0059261_3662 0.11 -0.1
3,775,688 - Ga0059261_3662 0.11 +0.0
3,775,688 - Ga0059261_3662 0.11 +0.9
3,775,688 - Ga0059261_3662 0.11 +0.6
3,775,688 - Ga0059261_3662 0.11 +0.1
3,776,048 + Ga0059261_3662 0.64 -0.1
3,776,048 + Ga0059261_3662 0.64 -0.1
3,776,048 + Ga0059261_3662 0.64 +0.3
3,776,048 + Ga0059261_3662 0.64 +0.1
3,776,048 + Ga0059261_3662 0.64 -0.0
3,776,048 + Ga0059261_3662 0.64 +0.2
3,776,048 + Ga0059261_3662 0.64 -0.1
3,776,048 + Ga0059261_3662 0.64 -0.3
3,776,048 + Ga0059261_3662 0.64 +0.1
3,776,048 + Ga0059261_3662 0.64 -0.1
3,776,049 - Ga0059261_3662 0.64 -0.1
3,776,049 - Ga0059261_3662 0.64 +0.1
3,776,049 - Ga0059261_3662 0.64 -0.1
3,776,049 - Ga0059261_3662 0.64 -0.0
3,776,049 - Ga0059261_3662 0.64 +0.4
3,776,049 - Ga0059261_3662 0.64 +0.3
3,776,049 - Ga0059261_3662 0.64 -0.0
3,776,049 - Ga0059261_3662 0.64 +1.5
3,776,049 - Ga0059261_3662 0.64 +0.1
3,776,051 + Ga0059261_3662 0.64 -1.1
3,776,051 + Ga0059261_3662 0.64 -1.0
3,776,051 + Ga0059261_3662 0.64 -0.1
3,776,052 - Ga0059261_3662 0.64 +0.6
3,776,052 - Ga0059261_3662 0.64 -0.8
3,776,052 - Ga0059261_3662 0.64 -0.1
3,776,052 - Ga0059261_3662 0.64 +0.4
3,776,052 - Ga0059261_3662 0.64 -0.1
3,776,052 - Ga0059261_3662 0.64 +0.2
3,776,052 - Ga0059261_3662 0.64 +0.3
3,776,069 + Ga0059261_3662 0.67 +0.5
3,776,096 + Ga0059261_3662 0.71 +0.4
3,776,097 - Ga0059261_3662 0.71 -0.3
3,776,097 - Ga0059261_3662 0.71 +0.7
3,776,097 - Ga0059261_3662 0.71 +0.2
3,776,130 + Ga0059261_3662 0.76 +0.5
3,776,130 + Ga0059261_3662 0.76 -0.2
3,776,130 + Ga0059261_3662 0.76 +0.0
3,776,130 + Ga0059261_3662 0.76 +0.4
3,776,130 + Ga0059261_3662 0.76 +0.7
3,776,130 + Ga0059261_3662 0.76 -0.3
3,776,130 + Ga0059261_3662 0.76 +0.7
3,776,130 + +2.1
3,776,130 + Ga0059261_3662 0.76 +0.5
3,776,130 + Ga0059261_3662 0.76 +0.3
3,776,130 + Ga0059261_3662 0.76 +0.2
3,776,130 + Ga0059261_3662 0.76 +0.1
3,776,130 + Ga0059261_3662 0.76 -0.3
3,776,130 + Ga0059261_3662 0.76 -0.8
3,776,131 + Ga0059261_3662 0.76 +0.1
3,776,131 - +0.5
3,776,131 - Ga0059261_3662 0.76 +0.3
3,776,131 - Ga0059261_3662 0.76 +0.3
3,776,131 - Ga0059261_3662 0.76 +0.4
3,776,276 + -0.2
3,776,319 + +1.2
3,776,319 + +0.6
3,776,320 - -0.0
3,776,333 + -0.0
3,776,333 + +0.2
3,776,333 + +0.0
3,776,333 + +0.5
3,776,333 + -0.1
3,776,333 + -0.3

Or see this region's nucleotide sequence