Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1601

Experiment: Spectinomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1600 and Ga0059261_1601 are separated by 259 nucleotidesGa0059261_1601 and Ga0059261_1602 overlap by 4 nucleotides Ga0059261_1600: Ga0059261_1600 - Domain of unknown function (DUF4167), at 1,677,152 to 1,677,907 _1600 Ga0059261_1601: Ga0059261_1601 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 1,678,167 to 1,678,979 _1601 Ga0059261_1602: Ga0059261_1602 - peptide chain release factor 1, at 1,678,976 to 1,680,049 _1602 Position (kb) 1678 1679Strain fitness (log2 ratio) -1 0 1at 1677.594 kb on + strand, within Ga0059261_1600at 1677.594 kb on + strand, within Ga0059261_1600at 1677.594 kb on + strand, within Ga0059261_1600at 1677.595 kb on - strand, within Ga0059261_1600at 1677.595 kb on - strand, within Ga0059261_1600at 1677.931 kb on - strandat 1677.931 kb on - strandat 1678.143 kb on - strandat 1678.143 kb on - strandat 1678.143 kb on - strandat 1678.143 kb on - strandat 1678.143 kb on - strandat 1678.145 kb on - strandat 1678.145 kb on - strandat 1678.145 kb on - strandat 1678.163 kb on + strandat 1678.164 kb on - strandat 1678.429 kb on + strand, within Ga0059261_1601at 1678.430 kb on - strand, within Ga0059261_1601at 1678.781 kb on + strand, within Ga0059261_1601at 1678.781 kb on + strand, within Ga0059261_1601at 1678.782 kb on - strand, within Ga0059261_1601at 1678.783 kb on + strand, within Ga0059261_1601at 1678.784 kb on - strandat 1678.784 kb on - strand, within Ga0059261_1601

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 2 mg/ml
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1,677,594 + Ga0059261_1600 0.58 -0.9
1,677,594 + Ga0059261_1600 0.58 -0.2
1,677,594 + Ga0059261_1600 0.58 -0.7
1,677,595 - Ga0059261_1600 0.59 -1.5
1,677,595 - Ga0059261_1600 0.59 +0.7
1,677,931 - +0.1
1,677,931 - -0.2
1,678,143 - -0.6
1,678,143 - +0.2
1,678,143 - -0.5
1,678,143 - -0.0
1,678,143 - -0.5
1,678,145 - -0.4
1,678,145 - +0.3
1,678,145 - -1.0
1,678,163 + -0.6
1,678,164 - -0.1
1,678,429 + Ga0059261_1601 0.32 -1.0
1,678,430 - Ga0059261_1601 0.32 +1.2
1,678,781 + Ga0059261_1601 0.76 +0.9
1,678,781 + Ga0059261_1601 0.76 +0.3
1,678,782 - Ga0059261_1601 0.76 +1.6
1,678,783 + Ga0059261_1601 0.76 -0.3
1,678,784 - +0.6
1,678,784 - Ga0059261_1601 0.76 +1.4

Or see this region's nucleotide sequence