Experiment: Spectinomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0887 and Ga0059261_0888 overlap by 4 nucleotides Ga0059261_0888 and Ga0059261_0889 are separated by 350 nucleotides Ga0059261_0889 and Ga0059261_0890 are separated by 64 nucleotides Ga0059261_0890 and Ga0059261_0891 are separated by 19 nucleotides Ga0059261_0891 and Ga0059261_0892 are separated by 52 nucleotides Ga0059261_0892 and Ga0059261_0893 are separated by 27 nucleotides
Ga0059261_0887: Ga0059261_0887 - Predicted transcriptional regulators, at 928,521 to 928,853
_0887
Ga0059261_0888: Ga0059261_0888 - Uncharacterized conserved protein, at 928,850 to 929,320
_0888
Ga0059261_0889: Ga0059261_0889 - Cold shock proteins, at 929,671 to 929,877
_0889
Ga0059261_0890: Ga0059261_0890 - hypothetical protein, at 929,942 to 930,160
_0890
Ga0059261_0891: Ga0059261_0891 - hypothetical protein, at 930,180 to 930,518
_0891
Ga0059261_0892: Ga0059261_0892 - hypothetical protein, at 930,571 to 930,699
_0892
Ga0059261_0893: Ga0059261_0893 - inosine-5'-monophosphate dehydrogenase, at 930,727 to 932,184
_0893
Position (kb) 929
930 Strain fitness (log2 ratio) -2
-1
0
1
2 at 928.859 kb on - strand at 928.910 kb on + strand at 928.910 kb on + strand, within Ga0059261_0888 at 928.910 kb on + strand, within Ga0059261_0888 at 928.911 kb on - strand, within Ga0059261_0888 at 928.911 kb on - strand, within Ga0059261_0888 at 928.911 kb on - strand, within Ga0059261_0888 at 928.911 kb on - strand, within Ga0059261_0888 at 929.006 kb on + strand, within Ga0059261_0888 at 929.006 kb on + strand, within Ga0059261_0888 at 929.006 kb on + strand, within Ga0059261_0888 at 929.006 kb on + strand, within Ga0059261_0888 at 929.007 kb on - strand, within Ga0059261_0888 at 929.054 kb on + strand, within Ga0059261_0888 at 929.054 kb on + strand, within Ga0059261_0888 at 929.055 kb on - strand, within Ga0059261_0888 at 929.090 kb on + strand, within Ga0059261_0888 at 929.090 kb on + strand, within Ga0059261_0888 at 929.090 kb on + strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.091 kb on - strand, within Ga0059261_0888 at 929.123 kb on + strand, within Ga0059261_0888 at 929.123 kb on + strand, within Ga0059261_0888 at 929.123 kb on + strand, within Ga0059261_0888 at 929.123 kb on + strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.124 kb on - strand, within Ga0059261_0888 at 929.130 kb on - strand, within Ga0059261_0888 at 929.234 kb on + strand, within Ga0059261_0888 at 929.234 kb on + strand, within Ga0059261_0888 at 929.234 kb on + strand, within Ga0059261_0888 at 929.234 kb on + strand, within Ga0059261_0888 at 929.235 kb on - strand, within Ga0059261_0888 at 929.235 kb on - strand, within Ga0059261_0888 at 929.235 kb on - strand, within Ga0059261_0888 at 929.235 kb on - strand, within Ga0059261_0888 at 929.235 kb on - strand, within Ga0059261_0888 at 929.366 kb on - strand at 929.494 kb on - strand at 929.537 kb on - strand at 929.538 kb on + strand at 929.670 kb on + strand at 929.819 kb on - strand, within Ga0059261_0889 at 929.819 kb on - strand at 929.819 kb on - strand, within Ga0059261_0889 at 929.819 kb on - strand, within Ga0059261_0889 at 929.959 kb on + strand at 929.959 kb on + strand at 929.959 kb on + strand at 929.960 kb on - strand at 929.960 kb on - strand at 930.076 kb on + strand, within Ga0059261_0890 at 930.076 kb on + strand, within Ga0059261_0890 at 930.076 kb on + strand, within Ga0059261_0890 at 930.098 kb on + strand, within Ga0059261_0890 at 930.098 kb on + strand, within Ga0059261_0890 at 930.099 kb on - strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.106 kb on + strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.107 kb on - strand, within Ga0059261_0890 at 930.158 kb on + strand at 930.159 kb on - strand at 930.159 kb on - strand at 930.189 kb on + strand at 930.190 kb on - strand at 930.318 kb on - strand, within Ga0059261_0891 at 930.410 kb on - strand, within Ga0059261_0891 at 930.425 kb on + strand, within Ga0059261_0891 at 930.425 kb on + strand, within Ga0059261_0891 at 930.426 kb on - strand, within Ga0059261_0891 at 930.486 kb on + strand at 930.487 kb on - strand at 930.487 kb on - strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.516 kb on + strand at 930.517 kb on - strand at 930.517 kb on - strand at 930.517 kb on - strand at 930.729 kb on - strand at 930.729 kb on - strand at 930.740 kb on + strand at 930.859 kb on - strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.860 kb on + strand at 930.861 kb on - strand at 930.861 kb on - strand at 930.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 2 mg/ml remove 928,859 - +0.3 928,910 + +0.5 928,910 + Ga0059261_0888 0.13 -0.4 928,910 + Ga0059261_0888 0.13 -0.3 928,911 - Ga0059261_0888 0.13 +0.1 928,911 - Ga0059261_0888 0.13 +0.4 928,911 - Ga0059261_0888 0.13 -0.2 928,911 - Ga0059261_0888 0.13 -0.5 929,006 + Ga0059261_0888 0.33 -0.1 929,006 + Ga0059261_0888 0.33 -0.2 929,006 + Ga0059261_0888 0.33 +0.2 929,006 + Ga0059261_0888 0.33 -2.3 929,007 - Ga0059261_0888 0.33 -0.1 929,054 + Ga0059261_0888 0.43 +0.0 929,054 + Ga0059261_0888 0.43 -0.5 929,055 - Ga0059261_0888 0.44 -0.0 929,090 + Ga0059261_0888 0.51 +1.1 929,090 + Ga0059261_0888 0.51 +0.1 929,090 + Ga0059261_0888 0.51 +0.7 929,091 - Ga0059261_0888 0.51 -0.4 929,091 - Ga0059261_0888 0.51 -0.3 929,091 - Ga0059261_0888 0.51 -1.5 929,091 - Ga0059261_0888 0.51 -0.3 929,091 - Ga0059261_0888 0.51 +2.5 929,091 - Ga0059261_0888 0.51 +0.1 929,123 + Ga0059261_0888 0.58 -0.1 929,123 + Ga0059261_0888 0.58 +0.2 929,123 + Ga0059261_0888 0.58 -0.5 929,123 + Ga0059261_0888 0.58 -0.7 929,124 - Ga0059261_0888 0.58 +0.0 929,124 - Ga0059261_0888 0.58 -0.2 929,124 - Ga0059261_0888 0.58 +0.1 929,124 - Ga0059261_0888 0.58 +0.9 929,124 - Ga0059261_0888 0.58 -0.2 929,124 - Ga0059261_0888 0.58 -0.3 929,124 - Ga0059261_0888 0.58 -0.5 929,124 - Ga0059261_0888 0.58 +0.0 929,124 - Ga0059261_0888 0.58 +0.9 929,124 - Ga0059261_0888 0.58 +0.2 929,124 - Ga0059261_0888 0.58 +0.4 929,124 - Ga0059261_0888 0.58 +0.1 929,130 - Ga0059261_0888 0.59 -0.1 929,234 + Ga0059261_0888 0.82 +0.2 929,234 + Ga0059261_0888 0.82 +0.4 929,234 + Ga0059261_0888 0.82 -0.1 929,234 + Ga0059261_0888 0.82 -0.1 929,235 - Ga0059261_0888 0.82 -0.5 929,235 - Ga0059261_0888 0.82 +0.7 929,235 - Ga0059261_0888 0.82 +0.2 929,235 - Ga0059261_0888 0.82 +0.2 929,235 - Ga0059261_0888 0.82 -0.6 929,366 - -0.1 929,494 - -0.6 929,537 - -0.4 929,538 + -0.8 929,670 + -0.3 929,819 - Ga0059261_0889 0.71 +0.7 929,819 - -0.1 929,819 - Ga0059261_0889 0.71 -0.5 929,819 - Ga0059261_0889 0.71 -0.1 929,959 + -1.1 929,959 + -1.9 929,959 + -0.5 929,960 - -0.9 929,960 - -1.1 930,076 + Ga0059261_0890 0.61 -0.5 930,076 + Ga0059261_0890 0.61 -0.8 930,076 + Ga0059261_0890 0.61 -0.4 930,098 + Ga0059261_0890 0.71 -0.3 930,098 + Ga0059261_0890 0.71 +0.4 930,099 - Ga0059261_0890 0.72 -0.1 930,106 + Ga0059261_0890 0.75 -0.7 930,106 + Ga0059261_0890 0.75 +0.2 930,106 + Ga0059261_0890 0.75 -0.3 930,106 + Ga0059261_0890 0.75 -0.2 930,106 + Ga0059261_0890 0.75 +0.3 930,106 + Ga0059261_0890 0.75 -0.2 930,107 - Ga0059261_0890 0.75 -0.5 930,107 - Ga0059261_0890 0.75 -0.1 930,107 - Ga0059261_0890 0.75 +0.0 930,107 - Ga0059261_0890 0.75 -0.8 930,158 + -0.5 930,159 - +0.0 930,159 - +0.4 930,189 + -0.7 930,190 - -0.5 930,318 - Ga0059261_0891 0.41 +0.4 930,410 - Ga0059261_0891 0.68 +0.1 930,425 + Ga0059261_0891 0.72 +0.3 930,425 + Ga0059261_0891 0.72 -1.9 930,426 - Ga0059261_0891 0.73 +0.5 930,486 + -0.2 930,487 - +0.2 930,487 - +0.4 930,516 + -0.1 930,516 + -0.8 930,516 + +1.3 930,516 + -0.2 930,516 + -0.2 930,517 - -0.7 930,517 - -1.3 930,517 - -0.2 930,729 - -0.8 930,729 - +0.3 930,740 + -1.1 930,859 - +0.6 930,860 + -0.1 930,860 + -0.5 930,860 + +0.5 930,860 + +0.1 930,861 - -0.3 930,861 - -0.4 930,861 - +1.0
Or see this region's nucleotide sequence