Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0252

Experiment: Spectinomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0250 and Ga0059261_0251 overlap by 4 nucleotidesGa0059261_0251 and Ga0059261_0252 are separated by 119 nucleotidesGa0059261_0252 and Ga0059261_0253 are separated by 64 nucleotidesGa0059261_0253 and Ga0059261_0254 are separated by 40 nucleotides Ga0059261_0250: Ga0059261_0250 - Protein of unknown function (DUF3037), at 240,877 to 241,728 _0250 Ga0059261_0251: Ga0059261_0251 - hypothetical protein, at 241,725 to 242,447 _0251 Ga0059261_0252: Ga0059261_0252 - SpoIIAA-like, at 242,567 to 242,956 _0252 Ga0059261_0253: Ga0059261_0253 - hypothetical protein, at 243,021 to 243,452 _0253 Ga0059261_0254: Ga0059261_0254 - triosephosphate isomerase (EC 5.3.1.1), at 243,493 to 244,239 _0254 Position (kb) 242 243Strain fitness (log2 ratio) -2 -1 0 1 2at 241.833 kb on + strand, within Ga0059261_0251at 241.833 kb on + strand, within Ga0059261_0251at 241.879 kb on + strand, within Ga0059261_0251at 241.879 kb on + strand, within Ga0059261_0251at 241.879 kb on + strand, within Ga0059261_0251at 241.880 kb on - strandat 241.880 kb on - strand, within Ga0059261_0251at 241.880 kb on - strand, within Ga0059261_0251at 241.880 kb on - strand, within Ga0059261_0251at 241.880 kb on - strandat 241.880 kb on - strand, within Ga0059261_0251at 241.880 kb on - strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.931 kb on + strand, within Ga0059261_0251at 241.932 kb on - strand, within Ga0059261_0251at 241.932 kb on - strand, within Ga0059261_0251at 241.932 kb on - strand, within Ga0059261_0251at 241.932 kb on - strand, within Ga0059261_0251at 241.943 kb on + strand, within Ga0059261_0251at 242.080 kb on + strand, within Ga0059261_0251at 242.248 kb on - strand, within Ga0059261_0251at 242.274 kb on + strand, within Ga0059261_0251at 242.274 kb on + strand, within Ga0059261_0251at 242.274 kb on + strand, within Ga0059261_0251at 242.274 kb on + strand, within Ga0059261_0251at 242.275 kb on - strand, within Ga0059261_0251at 242.275 kb on - strand, within Ga0059261_0251at 242.275 kb on - strand, within Ga0059261_0251at 242.298 kb on + strand, within Ga0059261_0251at 242.298 kb on + strand, within Ga0059261_0251at 242.298 kb on + strand, within Ga0059261_0251at 242.298 kb on + strand, within Ga0059261_0251at 242.299 kb on - strand, within Ga0059261_0251at 242.299 kb on - strand, within Ga0059261_0251at 242.299 kb on - strand, within Ga0059261_0251at 242.299 kb on - strand, within Ga0059261_0251at 242.310 kb on + strand, within Ga0059261_0251at 242.350 kb on + strand, within Ga0059261_0251at 242.350 kb on + strand, within Ga0059261_0251at 242.351 kb on - strand, within Ga0059261_0251at 242.351 kb on - strand, within Ga0059261_0251at 242.351 kb on - strand, within Ga0059261_0251at 242.403 kb on + strandat 242.404 kb on - strandat 242.404 kb on - strandat 242.404 kb on - strandat 242.404 kb on - strandat 242.434 kb on + strandat 242.434 kb on + strandat 242.435 kb on - strandat 242.435 kb on - strandat 242.443 kb on - strandat 242.443 kb on - strandat 242.447 kb on + strandat 242.447 kb on + strandat 242.448 kb on - strandat 242.448 kb on - strandat 242.448 kb on - strandat 242.449 kb on + strandat 242.449 kb on + strandat 242.450 kb on - strandat 242.450 kb on - strandat 242.450 kb on - strandat 242.493 kb on - strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.556 kb on + strandat 242.556 kb on + strandat 242.557 kb on - strandat 242.564 kb on - strandat 242.564 kb on - strandat 242.564 kb on - strandat 242.876 kb on + strand, within Ga0059261_0252at 242.877 kb on - strand, within Ga0059261_0252at 242.877 kb on - strand, within Ga0059261_0252at 242.885 kb on + strand, within Ga0059261_0252at 242.886 kb on - strand, within Ga0059261_0252at 242.886 kb on - strand, within Ga0059261_0252at 242.990 kb on - strandat 242.990 kb on - strandat 243.010 kb on + strandat 243.011 kb on - strandat 243.102 kb on + strand, within Ga0059261_0253at 243.102 kb on + strand, within Ga0059261_0253at 243.103 kb on - strand, within Ga0059261_0253at 243.103 kb on - strand, within Ga0059261_0253at 243.103 kb on - strand, within Ga0059261_0253at 243.103 kb on - strand, within Ga0059261_0253at 243.210 kb on + strand, within Ga0059261_0253at 243.210 kb on + strand, within Ga0059261_0253at 243.211 kb on - strand, within Ga0059261_0253at 243.279 kb on + strand, within Ga0059261_0253at 243.279 kb on + strand, within Ga0059261_0253at 243.280 kb on - strand, within Ga0059261_0253at 243.339 kb on + strand, within Ga0059261_0253at 243.340 kb on - strand, within Ga0059261_0253at 243.340 kb on - strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.342 kb on + strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.343 kb on - strand, within Ga0059261_0253at 243.344 kb on + strand, within Ga0059261_0253at 243.344 kb on + strand, within Ga0059261_0253at 243.344 kb on + strand, within Ga0059261_0253at 243.344 kb on + strand, within Ga0059261_0253at 243.344 kb on + strand, within Ga0059261_0253at 243.345 kb on - strand, within Ga0059261_0253at 243.345 kb on - strand, within Ga0059261_0253at 243.345 kb on - strand, within Ga0059261_0253

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 2 mg/ml
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241,833 + Ga0059261_0251 0.15 +0.2
241,833 + Ga0059261_0251 0.15 -0.3
241,879 + Ga0059261_0251 0.21 -0.2
241,879 + Ga0059261_0251 0.21 +0.8
241,879 + Ga0059261_0251 0.21 +0.9
241,880 - -1.9
241,880 - Ga0059261_0251 0.21 -0.5
241,880 - Ga0059261_0251 0.21 +1.2
241,880 - Ga0059261_0251 0.21 -0.2
241,880 - +1.0
241,880 - Ga0059261_0251 0.21 -1.0
241,880 - Ga0059261_0251 0.21 +0.5
241,931 + Ga0059261_0251 0.28 +0.3
241,931 + Ga0059261_0251 0.28 +0.6
241,931 + Ga0059261_0251 0.28 -0.2
241,931 + Ga0059261_0251 0.28 -0.9
241,931 + Ga0059261_0251 0.28 +0.2
241,931 + Ga0059261_0251 0.28 -0.2
241,932 - Ga0059261_0251 0.29 -0.1
241,932 - Ga0059261_0251 0.29 +0.1
241,932 - Ga0059261_0251 0.29 +0.6
241,932 - Ga0059261_0251 0.29 -0.1
241,943 + Ga0059261_0251 0.30 -0.2
242,080 + Ga0059261_0251 0.49 +0.0
242,248 - Ga0059261_0251 0.72 +0.9
242,274 + Ga0059261_0251 0.76 +1.3
242,274 + Ga0059261_0251 0.76 -1.2
242,274 + Ga0059261_0251 0.76 -0.2
242,274 + Ga0059261_0251 0.76 +0.3
242,275 - Ga0059261_0251 0.76 +0.1
242,275 - Ga0059261_0251 0.76 +0.4
242,275 - Ga0059261_0251 0.76 +0.1
242,298 + Ga0059261_0251 0.79 -0.2
242,298 + Ga0059261_0251 0.79 +0.1
242,298 + Ga0059261_0251 0.79 -0.4
242,298 + Ga0059261_0251 0.79 -0.0
242,299 - Ga0059261_0251 0.79 +0.0
242,299 - Ga0059261_0251 0.79 -0.3
242,299 - Ga0059261_0251 0.79 -0.3
242,299 - Ga0059261_0251 0.79 +0.5
242,310 + Ga0059261_0251 0.81 +0.1
242,350 + Ga0059261_0251 0.86 -0.2
242,350 + Ga0059261_0251 0.86 -0.6
242,351 - Ga0059261_0251 0.87 -0.2
242,351 - Ga0059261_0251 0.87 -1.7
242,351 - Ga0059261_0251 0.87 -0.7
242,403 + -0.6
242,404 - -0.2
242,404 - -0.6
242,404 - +0.1
242,404 - +0.4
242,434 + +0.2
242,434 + -0.2
242,435 - -0.2
242,435 - -0.2
242,443 - +0.8
242,443 - +0.0
242,447 + +0.5
242,447 + -0.0
242,448 - -0.1
242,448 - +1.4
242,448 - -0.3
242,449 + -0.2
242,449 + +1.8
242,450 - +0.4
242,450 - +1.4
242,450 - +0.2
242,493 - -0.4
242,528 + -1.1
242,528 + -0.2
242,528 + +0.7
242,528 + +0.4
242,529 - -0.1
242,529 - +0.1
242,529 - -0.4
242,529 - -0.0
242,529 - +1.0
242,529 - +0.4
242,529 - -0.5
242,529 - -0.8
242,529 - -0.2
242,556 + -0.2
242,556 + -0.4
242,557 - -0.6
242,564 - -1.2
242,564 - +0.7
242,564 - +0.7
242,876 + Ga0059261_0252 0.79 +0.8
242,877 - Ga0059261_0252 0.79 -0.6
242,877 - Ga0059261_0252 0.79 +0.1
242,885 + Ga0059261_0252 0.82 +0.0
242,886 - Ga0059261_0252 0.82 +0.8
242,886 - Ga0059261_0252 0.82 +2.0
242,990 - +0.2
242,990 - +0.0
243,010 + -0.4
243,011 - +0.6
243,102 + Ga0059261_0253 0.19 +0.1
243,102 + Ga0059261_0253 0.19 -0.3
243,103 - Ga0059261_0253 0.19 -0.1
243,103 - Ga0059261_0253 0.19 -0.2
243,103 - Ga0059261_0253 0.19 +0.6
243,103 - Ga0059261_0253 0.19 -0.8
243,210 + Ga0059261_0253 0.44 +0.1
243,210 + Ga0059261_0253 0.44 -0.4
243,211 - Ga0059261_0253 0.44 +1.0
243,279 + Ga0059261_0253 0.60 +0.4
243,279 + Ga0059261_0253 0.60 +0.4
243,280 - Ga0059261_0253 0.60 +0.9
243,339 + Ga0059261_0253 0.74 +0.4
243,340 - Ga0059261_0253 0.74 +0.4
243,340 - Ga0059261_0253 0.74 +0.4
243,342 + Ga0059261_0253 0.74 -0.4
243,342 + Ga0059261_0253 0.74 -0.2
243,342 + Ga0059261_0253 0.74 -0.4
243,342 + Ga0059261_0253 0.74 -0.1
243,342 + Ga0059261_0253 0.74 +1.0
243,342 + Ga0059261_0253 0.74 -0.7
243,342 + Ga0059261_0253 0.74 +0.2
243,342 + Ga0059261_0253 0.74 +0.8
243,343 - Ga0059261_0253 0.75 +0.2
243,343 - Ga0059261_0253 0.75 +0.0
243,343 - Ga0059261_0253 0.75 +0.2
243,343 - Ga0059261_0253 0.75 -0.3
243,343 - Ga0059261_0253 0.75 -0.0
243,343 - Ga0059261_0253 0.75 +0.6
243,343 - Ga0059261_0253 0.75 -1.6
243,343 - Ga0059261_0253 0.75 +0.6
243,343 - Ga0059261_0253 0.75 -0.2
243,344 + Ga0059261_0253 0.75 -0.3
243,344 + Ga0059261_0253 0.75 -0.2
243,344 + Ga0059261_0253 0.75 +0.8
243,344 + Ga0059261_0253 0.75 -0.6
243,344 + Ga0059261_0253 0.75 -0.0
243,345 - Ga0059261_0253 0.75 -0.2
243,345 - Ga0059261_0253 0.75 +0.0
243,345 - Ga0059261_0253 0.75 -0.6

Or see this region's nucleotide sequence