Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19105

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19100 and AO356_19105 are separated by 32 nucleotidesAO356_19105 and AO356_19110 are separated by 169 nucleotides AO356_19100: AO356_19100 - hypothetical protein, at 4,290,631 to 4,291,689 _19100 AO356_19105: AO356_19105 - hypothetical protein, at 4,291,722 to 4,292,795 _19105 AO356_19110: AO356_19110 - DnaA regulatory inactivator Hda, at 4,292,965 to 4,293,669 _19110 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1 2at 4290.783 kb on + strand, within AO356_19100at 4290.783 kb on + strand, within AO356_19100at 4290.877 kb on + strand, within AO356_19100at 4290.877 kb on + strand, within AO356_19100at 4290.878 kb on - strand, within AO356_19100at 4290.933 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.257 kb on + strand, within AO356_19100at 4291.258 kb on - strand, within AO356_19100at 4291.258 kb on - strand, within AO356_19100at 4291.687 kb on + strandat 4291.687 kb on + strandat 4291.688 kb on - strandat 4291.702 kb on + strandat 4291.702 kb on + strandat 4291.702 kb on + strandat 4291.702 kb on + strandat 4291.703 kb on - strandat 4291.703 kb on - strandat 4291.703 kb on - strandat 4291.703 kb on - strandat 4291.703 kb on - strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.704 kb on + strandat 4291.705 kb on - strandat 4291.705 kb on - strandat 4291.705 kb on - strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.706 kb on + strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.707 kb on - strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.710 kb on + strandat 4291.711 kb on - strandat 4291.711 kb on - strandat 4291.711 kb on - strandat 4291.711 kb on - strandat 4291.711 kb on - strandat 4291.711 kb on - strandat 4291.778 kb on + strandat 4291.778 kb on + strandat 4291.778 kb on + strandat 4291.779 kb on - strandat 4291.779 kb on - strandat 4291.779 kb on - strandat 4291.779 kb on - strandat 4291.779 kb on - strandat 4291.782 kb on + strandat 4291.782 kb on + strandat 4291.782 kb on + strandat 4291.783 kb on - strandat 4291.783 kb on - strandat 4291.783 kb on - strandat 4291.833 kb on + strand, within AO356_19105at 4291.833 kb on + strand, within AO356_19105at 4291.834 kb on - strand, within AO356_19105at 4291.834 kb on - strand, within AO356_19105at 4291.834 kb on - strand, within AO356_19105at 4291.834 kb on - strand, within AO356_19105at 4291.940 kb on - strand, within AO356_19105at 4291.940 kb on - strand, within AO356_19105at 4291.940 kb on - strand, within AO356_19105at 4291.940 kb on - strand, within AO356_19105at 4291.984 kb on - strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.220 kb on + strand, within AO356_19105at 4292.221 kb on - strand, within AO356_19105at 4292.221 kb on - strand, within AO356_19105at 4292.356 kb on + strand, within AO356_19105at 4292.379 kb on + strand, within AO356_19105at 4292.380 kb on - strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.460 kb on + strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.461 kb on - strand, within AO356_19105at 4292.735 kb on + strandat 4292.735 kb on + strandat 4292.735 kb on + strandat 4292.736 kb on - strandat 4292.736 kb on - strandat 4292.736 kb on - strandat 4292.748 kb on + strandat 4292.748 kb on + strandat 4292.748 kb on + strandat 4292.749 kb on - strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.766 kb on + strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.767 kb on - strandat 4292.794 kb on - strandat 4292.903 kb on + strandat 4292.903 kb on + strandat 4292.905 kb on + strandat 4292.921 kb on + strandat 4292.921 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.668 kb on - strandat 4293.668 kb on - strandat 4293.763 kb on + strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.771 kb on + strandat 4293.771 kb on + strandat 4293.772 kb on - strandat 4293.772 kb on - strandat 4293.777 kb on + strandat 4293.777 kb on + strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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4,290,783 + AO356_19100 0.14 -0.0
4,290,783 + AO356_19100 0.14 -0.7
4,290,877 + AO356_19100 0.23 +0.3
4,290,877 + AO356_19100 0.23 +1.0
4,290,878 - AO356_19100 0.23 -0.7
4,290,933 + AO356_19100 0.29 +0.1
4,291,257 + AO356_19100 0.59 +0.6
4,291,257 + AO356_19100 0.59 +0.0
4,291,257 + AO356_19100 0.59 +0.3
4,291,257 + AO356_19100 0.59 -0.1
4,291,257 + AO356_19100 0.59 +0.3
4,291,258 - AO356_19100 0.59 +0.1
4,291,258 - AO356_19100 0.59 -0.6
4,291,687 + +0.3
4,291,687 + -1.0
4,291,688 - -0.2
4,291,702 + -0.9
4,291,702 + +0.1
4,291,702 + +0.3
4,291,702 + +0.3
4,291,703 - +0.3
4,291,703 - -0.0
4,291,703 - -1.3
4,291,703 - -1.3
4,291,703 - +0.2
4,291,704 + -0.8
4,291,704 + +1.4
4,291,704 + +0.3
4,291,704 + +0.0
4,291,704 + +1.2
4,291,704 + -0.5
4,291,704 + +0.0
4,291,704 + +0.3
4,291,705 - +0.3
4,291,705 - +0.1
4,291,705 - +0.5
4,291,706 + +1.3
4,291,706 + +0.3
4,291,706 + +0.4
4,291,706 + -1.6
4,291,706 + +0.2
4,291,706 + +0.4
4,291,706 + +0.7
4,291,706 + -1.1
4,291,706 + -0.0
4,291,707 - -0.5
4,291,707 - +0.8
4,291,707 - +0.5
4,291,707 - -0.9
4,291,707 - +1.5
4,291,707 - -0.3
4,291,707 - +0.9
4,291,710 + +0.1
4,291,710 + +0.8
4,291,710 + +0.4
4,291,710 + +0.0
4,291,710 + -0.8
4,291,710 + -0.2
4,291,710 + +0.2
4,291,711 - +0.7
4,291,711 - +0.5
4,291,711 - +0.1
4,291,711 - -0.1
4,291,711 - +0.3
4,291,711 - -0.4
4,291,778 + -0.3
4,291,778 + +0.1
4,291,778 + -0.6
4,291,779 - +0.2
4,291,779 - -0.1
4,291,779 - -0.7
4,291,779 - +0.3
4,291,779 - +0.5
4,291,782 + -0.9
4,291,782 + +0.2
4,291,782 + -0.0
4,291,783 - +0.2
4,291,783 - -0.5
4,291,783 - -0.2
4,291,833 + AO356_19105 0.10 +0.1
4,291,833 + AO356_19105 0.10 +0.6
4,291,834 - AO356_19105 0.10 -0.5
4,291,834 - AO356_19105 0.10 -0.9
4,291,834 - AO356_19105 0.10 +0.5
4,291,834 - AO356_19105 0.10 +0.4
4,291,940 - AO356_19105 0.20 -0.2
4,291,940 - AO356_19105 0.20 +0.3
4,291,940 - AO356_19105 0.20 -0.2
4,291,940 - AO356_19105 0.20 -0.4
4,291,984 - AO356_19105 0.24 +0.2
4,292,220 + AO356_19105 0.46 +0.1
4,292,220 + AO356_19105 0.46 +0.3
4,292,220 + AO356_19105 0.46 -0.4
4,292,220 + AO356_19105 0.46 -0.3
4,292,221 - AO356_19105 0.46 +0.3
4,292,221 - AO356_19105 0.46 +0.1
4,292,356 + AO356_19105 0.59 +0.0
4,292,379 + AO356_19105 0.61 +0.8
4,292,380 - AO356_19105 0.61 +0.2
4,292,460 + AO356_19105 0.69 +0.3
4,292,460 + AO356_19105 0.69 -0.2
4,292,460 + AO356_19105 0.69 +0.0
4,292,461 - AO356_19105 0.69 +0.4
4,292,461 - AO356_19105 0.69 +0.6
4,292,461 - AO356_19105 0.69 -0.2
4,292,461 - AO356_19105 0.69 +0.5
4,292,461 - AO356_19105 0.69 -0.8
4,292,461 - AO356_19105 0.69 -1.1
4,292,461 - AO356_19105 0.69 -1.4
4,292,461 - AO356_19105 0.69 -0.4
4,292,461 - AO356_19105 0.69 +0.8
4,292,461 - AO356_19105 0.69 -0.5
4,292,735 + -0.3
4,292,735 + +0.8
4,292,735 + +0.5
4,292,736 - -0.2
4,292,736 - -0.9
4,292,736 - +0.3
4,292,748 + +0.2
4,292,748 + -2.1
4,292,748 + +0.6
4,292,749 - +0.5
4,292,766 + -0.8
4,292,766 + -1.1
4,292,766 + +0.5
4,292,766 + +0.4
4,292,766 + +0.7
4,292,766 + +0.4
4,292,766 + -0.1
4,292,766 + +0.6
4,292,767 - -1.2
4,292,767 - -0.6
4,292,767 - +0.5
4,292,767 - +0.1
4,292,767 - +0.1
4,292,794 - +0.2
4,292,903 + -2.4
4,292,903 + +0.7
4,292,905 + -0.8
4,292,921 + +0.4
4,292,921 + +0.1
4,293,667 + -0.0
4,293,667 + +0.1
4,293,667 + -0.2
4,293,668 - -0.1
4,293,668 - +0.0
4,293,763 + +0.1
4,293,764 - -0.8
4,293,764 - +0.4
4,293,764 - -0.7
4,293,771 + -0.5
4,293,771 + -0.9
4,293,772 - +0.5
4,293,772 - -0.1
4,293,777 + +2.2
4,293,777 + +0.3
4,293,778 - -0.2
4,293,778 - +0.3
4,293,778 - -0.3
4,293,778 - -0.4
4,293,784 - -0.7

Or see this region's nucleotide sequence