Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17945

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17940 and AO356_17945 are separated by 101 nucleotidesAO356_17945 and AO356_17950 are separated by 2 nucleotides AO356_17940: AO356_17940 - hypothetical protein, at 4,049,882 to 4,050,826 _17940 AO356_17945: AO356_17945 - cobalamin adenosyltransferase, at 4,050,928 to 4,051,509 _17945 AO356_17950: AO356_17950 - histidine kinase, at 4,051,512 to 4,053,548 _17950 Position (kb) 4050 4051 4052Strain fitness (log2 ratio) -3 -2 -1 0 1at 4050.275 kb on + strand, within AO356_17940at 4050.276 kb on - strand, within AO356_17940at 4050.276 kb on - strand, within AO356_17940at 4050.363 kb on + strand, within AO356_17940at 4050.363 kb on + strand, within AO356_17940at 4050.728 kb on + strand, within AO356_17940at 4050.728 kb on + strand, within AO356_17940at 4050.729 kb on - strand, within AO356_17940at 4050.729 kb on - strand, within AO356_17940at 4050.729 kb on - strand, within AO356_17940at 4050.729 kb on - strand, within AO356_17940at 4050.729 kb on - strand, within AO356_17940at 4051.035 kb on - strand, within AO356_17945at 4051.035 kb on - strand, within AO356_17945at 4051.035 kb on - strand, within AO356_17945at 4051.244 kb on + strand, within AO356_17945at 4051.244 kb on + strand, within AO356_17945at 4051.244 kb on + strand, within AO356_17945at 4051.245 kb on - strand, within AO356_17945at 4051.245 kb on - strand, within AO356_17945at 4051.484 kb on + strandat 4051.649 kb on - strandat 4051.802 kb on + strand, within AO356_17950at 4051.803 kb on - strand, within AO356_17950at 4052.435 kb on - strand, within AO356_17950at 4052.489 kb on + strand, within AO356_17950at 4052.489 kb on + strand, within AO356_17950at 4052.489 kb on + strand, within AO356_17950at 4052.489 kb on + strand, within AO356_17950at 4052.489 kb on + strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950at 4052.490 kb on - strand, within AO356_17950

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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4,050,275 + AO356_17940 0.42 +0.5
4,050,276 - AO356_17940 0.42 -1.0
4,050,276 - AO356_17940 0.42 +0.3
4,050,363 + AO356_17940 0.51 -0.2
4,050,363 + AO356_17940 0.51 +0.0
4,050,728 + AO356_17940 0.90 +1.4
4,050,728 + AO356_17940 0.90 +0.7
4,050,729 - AO356_17940 0.90 -0.8
4,050,729 - AO356_17940 0.90 +1.7
4,050,729 - AO356_17940 0.90 +0.5
4,050,729 - AO356_17940 0.90 -1.4
4,050,729 - AO356_17940 0.90 +0.2
4,051,035 - AO356_17945 0.18 +0.1
4,051,035 - AO356_17945 0.18 -1.2
4,051,035 - AO356_17945 0.18 +0.2
4,051,244 + AO356_17945 0.54 +0.2
4,051,244 + AO356_17945 0.54 -0.4
4,051,244 + AO356_17945 0.54 +0.2
4,051,245 - AO356_17945 0.54 -0.5
4,051,245 - AO356_17945 0.54 +0.4
4,051,484 + -0.0
4,051,649 - -1.4
4,051,802 + AO356_17950 0.14 -0.7
4,051,803 - AO356_17950 0.14 -1.2
4,052,435 - AO356_17950 0.45 +0.1
4,052,489 + AO356_17950 0.48 -0.6
4,052,489 + AO356_17950 0.48 -1.6
4,052,489 + AO356_17950 0.48 -1.6
4,052,489 + AO356_17950 0.48 -0.6
4,052,489 + AO356_17950 0.48 +0.2
4,052,490 - AO356_17950 0.48 -2.2
4,052,490 - AO356_17950 0.48 -1.7
4,052,490 - AO356_17950 0.48 -1.0
4,052,490 - AO356_17950 0.48 -2.0
4,052,490 - AO356_17950 0.48 -1.2
4,052,490 - AO356_17950 0.48 -2.8

Or see this region's nucleotide sequence