Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14405

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14400 and AO356_14405 are separated by 202 nucleotidesAO356_14405 and AO356_14410 are separated by 78 nucleotidesAO356_14410 and AO356_14415 overlap by 4 nucleotides AO356_14400: AO356_14400 - polyamine ABC transporter permease, at 3,276,165 to 3,276,989 _14400 AO356_14405: AO356_14405 - alcohol dehydrogenase, at 3,277,192 to 3,278,340 _14405 AO356_14410: AO356_14410 - ribulose phosphate epimerase, at 3,278,419 to 3,279,093 _14410 AO356_14415: AO356_14415 - phosphoglycolate phosphatase, at 3,279,090 to 3,279,908 _14415 Position (kb) 3277 3278 3279Strain fitness (log2 ratio) -2 -1 0 1 2at 3276.207 kb on + strandat 3276.207 kb on + strandat 3276.208 kb on - strandat 3276.307 kb on - strand, within AO356_14400at 3276.336 kb on + strand, within AO356_14400at 3276.543 kb on + strand, within AO356_14400at 3276.543 kb on + strand, within AO356_14400at 3276.543 kb on + strand, within AO356_14400at 3276.543 kb on + strand, within AO356_14400at 3276.543 kb on + strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3276.544 kb on - strand, within AO356_14400at 3277.038 kb on - strandat 3277.117 kb on + strandat 3277.117 kb on + strandat 3277.151 kb on + strandat 3277.152 kb on - strandat 3277.152 kb on - strandat 3277.152 kb on - strandat 3277.177 kb on + strandat 3277.177 kb on + strandat 3277.177 kb on + strandat 3277.178 kb on - strandat 3277.221 kb on + strandat 3277.221 kb on + strandat 3277.369 kb on + strand, within AO356_14405at 3277.370 kb on - strand, within AO356_14405at 3277.513 kb on + strand, within AO356_14405at 3277.513 kb on + strand, within AO356_14405at 3277.514 kb on - strand, within AO356_14405at 3277.514 kb on - strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.542 kb on + strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.543 kb on - strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.792 kb on + strand, within AO356_14405at 3277.793 kb on - strand, within AO356_14405at 3277.876 kb on + strand, within AO356_14405at 3277.877 kb on - strand, within AO356_14405at 3277.984 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3277.991 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.044 kb on + strand, within AO356_14405at 3278.208 kb on + strand, within AO356_14405at 3278.209 kb on - strand, within AO356_14405at 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.375 kb on + strandat 3278.376 kb on - strandat 3278.376 kb on - strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.377 kb on + strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3278.378 kb on - strandat 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.200 kb on + strand, within AO356_14415at 3279.201 kb on - strand, within AO356_14415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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3,276,207 + +0.2
3,276,207 + +0.5
3,276,208 - -0.5
3,276,307 - AO356_14400 0.17 -0.9
3,276,336 + AO356_14400 0.21 +0.1
3,276,543 + AO356_14400 0.46 -0.6
3,276,543 + AO356_14400 0.46 -0.5
3,276,543 + AO356_14400 0.46 +0.9
3,276,543 + AO356_14400 0.46 +0.3
3,276,543 + AO356_14400 0.46 -0.2
3,276,544 - AO356_14400 0.46 -0.1
3,276,544 - AO356_14400 0.46 +0.1
3,276,544 - AO356_14400 0.46 -0.1
3,276,544 - AO356_14400 0.46 -0.4
3,276,544 - AO356_14400 0.46 -1.1
3,276,544 - AO356_14400 0.46 +0.0
3,276,544 - AO356_14400 0.46 -0.2
3,276,544 - AO356_14400 0.46 -0.1
3,277,038 - -1.1
3,277,117 + +0.1
3,277,117 + +0.2
3,277,151 + +0.3
3,277,152 - -0.1
3,277,152 - -0.3
3,277,152 - +1.0
3,277,177 + +0.9
3,277,177 + +0.4
3,277,177 + -1.3
3,277,178 - +0.7
3,277,221 + +1.0
3,277,221 + +0.5
3,277,369 + AO356_14405 0.15 +0.4
3,277,370 - AO356_14405 0.15 -0.8
3,277,513 + AO356_14405 0.28 +0.6
3,277,513 + AO356_14405 0.28 +0.7
3,277,514 - AO356_14405 0.28 -0.5
3,277,514 - AO356_14405 0.28 +0.3
3,277,542 + AO356_14405 0.30 +0.0
3,277,542 + AO356_14405 0.30 -0.9
3,277,542 + AO356_14405 0.30 -1.9
3,277,542 + AO356_14405 0.30 -0.2
3,277,542 + AO356_14405 0.30 +0.7
3,277,543 - AO356_14405 0.31 -0.0
3,277,543 - AO356_14405 0.31 +0.6
3,277,543 - AO356_14405 0.31 -0.3
3,277,543 - AO356_14405 0.31 -1.2
3,277,543 - AO356_14405 0.31 -0.3
3,277,792 + AO356_14405 0.52 +0.7
3,277,792 + AO356_14405 0.52 +0.7
3,277,792 + AO356_14405 0.52 +0.3
3,277,792 + AO356_14405 0.52 -0.3
3,277,793 - AO356_14405 0.52 -0.2
3,277,876 + AO356_14405 0.60 -0.3
3,277,877 - AO356_14405 0.60 +0.5
3,277,984 + AO356_14405 0.69 +1.3
3,277,991 + AO356_14405 0.70 +0.6
3,277,991 + AO356_14405 0.70 +1.1
3,277,991 + AO356_14405 0.70 +1.1
3,278,044 + AO356_14405 0.74 -0.2
3,278,044 + AO356_14405 0.74 +2.3
3,278,044 + AO356_14405 0.74 -0.1
3,278,208 + AO356_14405 0.88 +0.3
3,278,209 - AO356_14405 0.89 +0.8
3,278,375 + +0.4
3,278,375 + +0.5
3,278,375 + -0.2
3,278,375 + -0.0
3,278,375 + +0.7
3,278,375 + +0.2
3,278,375 + +0.6
3,278,375 + +0.1
3,278,376 - -0.7
3,278,376 - +0.3
3,278,377 + -0.3
3,278,377 + +0.4
3,278,377 + +0.1
3,278,377 + -0.8
3,278,377 + +0.3
3,278,377 + -0.2
3,278,377 + -0.5
3,278,377 + -0.8
3,278,377 + -0.9
3,278,378 - -0.4
3,278,378 - +0.8
3,278,378 - -0.2
3,278,378 - -0.3
3,278,378 - +1.3
3,278,378 - +0.6
3,278,378 - +0.2
3,278,378 - +0.1
3,278,378 - +1.4
3,278,378 - +0.7
3,279,200 + AO356_14415 0.13 +1.0
3,279,200 + AO356_14415 0.13 -0.3
3,279,200 + AO356_14415 0.13 +0.4
3,279,200 + AO356_14415 0.13 -0.5
3,279,200 + AO356_14415 0.13 -0.2
3,279,200 + AO356_14415 0.13 +0.5
3,279,200 + AO356_14415 0.13 -0.4
3,279,201 - AO356_14415 0.14 -0.4

Or see this region's nucleotide sequence