Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13530 and AO356_13535 overlap by 7 nucleotides AO356_13535 and AO356_13540 overlap by 4 nucleotides AO356_13540 and AO356_13545 are separated by 67 nucleotides AO356_13545 and AO356_13550 are separated by 1 nucleotides
AO356_13530: AO356_13530 - biotin-independent malonate decarboxylase subunit gamma, at 3,068,687 to 3,069,490
_13530
AO356_13535: AO356_13535 - phosphoribosyl-dephospho-CoA transferase, at 3,069,484 to 3,070,107
_13535
AO356_13540: AO356_13540 - malonate decarboxylase subunit epsilon, at 3,070,104 to 3,071,024
_13540
AO356_13545: AO356_13545 - malonate carrier protein, at 3,071,092 to 3,071,508
_13545
AO356_13550: AO356_13550 - malonate transporter, at 3,071,510 to 3,072,274
_13550
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3069.269 kb on + strand, within AO356_13530 at 3069.269 kb on + strand, within AO356_13530 at 3069.668 kb on - strand, within AO356_13535 at 3070.329 kb on + strand, within AO356_13540 at 3070.329 kb on + strand, within AO356_13540 at 3070.329 kb on + strand, within AO356_13540 at 3070.329 kb on + strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.330 kb on - strand, within AO356_13540 at 3070.444 kb on - strand, within AO356_13540 at 3070.539 kb on + strand, within AO356_13540 at 3070.539 kb on + strand, within AO356_13540 at 3070.540 kb on - strand, within AO356_13540 at 3070.540 kb on - strand, within AO356_13540 at 3070.551 kb on - strand, within AO356_13540 at 3070.551 kb on - strand, within AO356_13540 at 3070.551 kb on - strand, within AO356_13540 at 3070.551 kb on - strand, within AO356_13540 at 3070.752 kb on + strand, within AO356_13540 at 3070.753 kb on - strand, within AO356_13540 at 3070.979 kb on + strand at 3070.980 kb on - strand at 3071.022 kb on + strand at 3071.022 kb on + strand at 3071.022 kb on + strand at 3071.031 kb on + strand at 3071.031 kb on + strand at 3071.031 kb on + strand at 3071.031 kb on + strand at 3071.032 kb on - strand at 3071.032 kb on - strand at 3071.032 kb on - strand at 3071.032 kb on - strand at 3071.032 kb on - strand at 3071.032 kb on - strand at 3071.086 kb on - strand at 3071.086 kb on - strand at 3071.097 kb on + strand at 3071.097 kb on + strand at 3071.098 kb on - strand at 3071.098 kb on - strand at 3071.098 kb on - strand at 3071.098 kb on - strand at 3071.101 kb on + strand at 3071.101 kb on + strand at 3071.127 kb on + strand at 3071.127 kb on + strand at 3071.128 kb on - strand at 3071.128 kb on - strand at 3071.128 kb on - strand at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.302 kb on + strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.303 kb on - strand, within AO356_13545 at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.509 kb on + strand at 3071.510 kb on - strand at 3071.510 kb on - strand at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.618 kb on + strand, within AO356_13550 at 3071.619 kb on - strand, within AO356_13550 at 3071.619 kb on - strand, within AO356_13550 at 3071.951 kb on + strand, within AO356_13550 at 3071.951 kb on + strand, within AO356_13550 at 3071.951 kb on + strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550 at 3071.952 kb on - strand, within AO356_13550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,069,269 + AO356_13530 0.72 -0.1 3,069,269 + AO356_13530 0.72 -1.0 3,069,668 - AO356_13535 0.29 +0.0 3,070,329 + AO356_13540 0.24 +0.0 3,070,329 + AO356_13540 0.24 +1.4 3,070,329 + AO356_13540 0.24 +0.4 3,070,329 + AO356_13540 0.24 +0.9 3,070,330 - AO356_13540 0.25 -3.5 3,070,330 - AO356_13540 0.25 +0.8 3,070,330 - AO356_13540 0.25 +0.1 3,070,330 - AO356_13540 0.25 +0.3 3,070,330 - AO356_13540 0.25 -0.2 3,070,330 - AO356_13540 0.25 -0.0 3,070,444 - AO356_13540 0.37 -0.3 3,070,539 + AO356_13540 0.47 -0.7 3,070,539 + AO356_13540 0.47 -1.1 3,070,540 - AO356_13540 0.47 -0.1 3,070,540 - AO356_13540 0.47 +0.4 3,070,551 - AO356_13540 0.49 +1.3 3,070,551 - AO356_13540 0.49 +0.1 3,070,551 - AO356_13540 0.49 -0.5 3,070,551 - AO356_13540 0.49 -0.0 3,070,752 + AO356_13540 0.70 -0.8 3,070,753 - AO356_13540 0.70 +0.6 3,070,979 + -1.3 3,070,980 - -0.6 3,071,022 + -0.4 3,071,022 + +0.4 3,071,022 + +0.1 3,071,031 + +0.8 3,071,031 + -0.3 3,071,031 + +0.3 3,071,031 + +0.3 3,071,032 - -0.0 3,071,032 - -0.0 3,071,032 - +0.0 3,071,032 - +1.2 3,071,032 - -0.1 3,071,032 - -0.2 3,071,086 - +0.0 3,071,086 - +0.4 3,071,097 + +0.1 3,071,097 + +0.3 3,071,098 - -0.4 3,071,098 - -0.5 3,071,098 - -0.4 3,071,098 - -0.5 3,071,101 + +0.3 3,071,101 + +0.2 3,071,127 + +0.5 3,071,127 + +0.0 3,071,128 - +0.7 3,071,128 - -0.3 3,071,128 - -0.3 3,071,302 + AO356_13545 0.50 +0.1 3,071,302 + AO356_13545 0.50 -0.9 3,071,302 + AO356_13545 0.50 -1.1 3,071,302 + AO356_13545 0.50 +0.8 3,071,302 + AO356_13545 0.50 +0.9 3,071,302 + AO356_13545 0.50 -1.0 3,071,302 + AO356_13545 0.50 -0.6 3,071,302 + AO356_13545 0.50 -0.3 3,071,302 + AO356_13545 0.50 +1.4 3,071,303 - AO356_13545 0.51 +0.6 3,071,303 - AO356_13545 0.51 -0.8 3,071,303 - AO356_13545 0.51 -0.7 3,071,303 - AO356_13545 0.51 -0.9 3,071,303 - AO356_13545 0.51 +0.9 3,071,303 - AO356_13545 0.51 +0.3 3,071,303 - AO356_13545 0.51 +0.4 3,071,303 - AO356_13545 0.51 -0.5 3,071,509 + -0.6 3,071,509 + +1.2 3,071,509 + +0.1 3,071,509 + +1.2 3,071,509 + -0.2 3,071,509 + -0.8 3,071,509 + -0.3 3,071,509 + -0.7 3,071,509 + -0.4 3,071,509 + -0.1 3,071,510 - +0.1 3,071,510 - -0.0 3,071,618 + AO356_13550 0.14 +0.7 3,071,618 + AO356_13550 0.14 -1.4 3,071,618 + AO356_13550 0.14 -1.1 3,071,618 + AO356_13550 0.14 +0.6 3,071,618 + AO356_13550 0.14 +0.4 3,071,618 + AO356_13550 0.14 -0.1 3,071,618 + AO356_13550 0.14 +0.2 3,071,619 - AO356_13550 0.14 -0.5 3,071,619 - AO356_13550 0.14 +0.3 3,071,951 + AO356_13550 0.58 +1.0 3,071,951 + AO356_13550 0.58 +0.4 3,071,951 + AO356_13550 0.58 +1.1 3,071,952 - AO356_13550 0.58 -0.5 3,071,952 - AO356_13550 0.58 +0.0 3,071,952 - AO356_13550 0.58 -0.5 3,071,952 - AO356_13550 0.58 +0.2 3,071,952 - AO356_13550 0.58 +0.4 3,071,952 - AO356_13550 0.58 -1.5 3,071,952 - AO356_13550 0.58 +0.8
Or see this region's nucleotide sequence