Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00515 and AO356_00520 are separated by 11 nucleotides AO356_00520 and AO356_00525 overlap by 4 nucleotides AO356_00525 and AO356_00530 are separated by 77 nucleotides
AO356_00515: AO356_00515 - cobalt transporter, at 109,794 to 109,982
_00515
AO356_00520: AO356_00520 - cobalt transporter, at 109,994 to 110,689
_00520
AO356_00525: AO356_00525 - cobalamin biosynthesis protein CobE, at 110,686 to 111,090
_00525
AO356_00530: AO356_00530 - precorrin-4 C11-methyltransferase, at 111,168 to 111,914
_00530
Position (kb) 110
111
112 Strain fitness (log2 ratio) -2
-1
0
1 at 110.006 kb on - strand at 110.006 kb on - strand at 110.270 kb on + strand, within AO356_00520 at 110.271 kb on - strand, within AO356_00520 at 110.271 kb on - strand, within AO356_00520 at 110.805 kb on - strand, within AO356_00525 at 110.820 kb on + strand, within AO356_00525 at 111.177 kb on + strand at 111.177 kb on + strand at 111.178 kb on - strand at 111.178 kb on - strand at 111.261 kb on + strand, within AO356_00530 at 111.262 kb on - strand, within AO356_00530 at 111.262 kb on - strand, within AO356_00530 at 111.584 kb on + strand, within AO356_00530 at 111.585 kb on - strand, within AO356_00530 at 111.782 kb on + strand, within AO356_00530 at 111.782 kb on + strand, within AO356_00530 at 111.879 kb on + strand at 111.944 kb on - strand at 111.944 kb on - strand at 111.945 kb on + strand at 111.946 kb on - strand at 111.946 kb on - strand at 111.998 kb on - strand at 112.056 kb on + strand at 112.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 110,006 - -1.3 110,006 - +1.0 110,270 + AO356_00520 0.40 -0.3 110,271 - AO356_00520 0.40 -0.0 110,271 - AO356_00520 0.40 +0.5 110,805 - AO356_00525 0.29 -1.5 110,820 + AO356_00525 0.33 -0.6 111,177 + -0.2 111,177 + -0.8 111,178 - +0.6 111,178 - -1.0 111,261 + AO356_00530 0.12 -1.4 111,262 - AO356_00530 0.13 -1.0 111,262 - AO356_00530 0.13 -0.5 111,584 + AO356_00530 0.56 -0.2 111,585 - AO356_00530 0.56 +0.1 111,782 + AO356_00530 0.82 -1.8 111,782 + AO356_00530 0.82 -0.2 111,879 + +0.6 111,944 - -0.2 111,944 - +0.0 111,945 + +0.0 111,946 - +0.6 111,946 - -1.0 111,998 - +0.7 112,056 + +0.2 112,056 + +0.4
Or see this region's nucleotide sequence