Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5105

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
6,055,778	+		Psyr_5104	0.21	+0.8
6,055,778	+		Psyr_5104	0.21	-1.4
6,055,778	+		Psyr_5104	0.21	+0.2
6,055,779	-		Psyr_5104	0.21	-0.9
6,055,782	+		Psyr_5104	0.21	-0.3
6,055,782	+		Psyr_5104	0.21	+1.6
6,055,782	+		Psyr_5104	0.21	+1.9
6,055,782	+		Psyr_5104	0.21	+0.0
6,055,783	-		Psyr_5104	0.22	+0.6
6,055,783	-		Psyr_5104	0.22	+0.8
6,056,216	+		Psyr_5104	0.63	+0.9
6,056,216	+		Psyr_5104	0.63	-2.1
6,056,313	+		Psyr_5104	0.72	+0.3
6,056,313	+		Psyr_5104	0.72	+0.5
6,056,357	+		Psyr_5104	0.77	-3.7
6,056,357	+		Psyr_5104	0.77	-0.4
6,056,545	-				-0.1
6,056,653	+				-0.4
6,056,653	+				+0.1
6,056,653	+				-2.4
6,056,653	+				+1.4
6,056,654	-				+1.3
6,056,654	-				-0.4
6,056,654	-				+0.2
6,056,681	+				+1.1
6,056,691	-				+0.1
6,056,691	-				-1.3
6,056,699	+				+1.5
6,056,699	+				+1.0
6,056,700	-				+1.7
6,056,714	-				-0.7
6,056,814	-				-0.8
6,056,824	+				-2.8
6,056,824	+				-0.2
6,056,825	-				+2.2
6,056,850	+				-0.3
6,056,850	+				-3.4
6,056,851	-				+1.4
6,056,851	-				+0.7
6,056,857	+				-0.3
6,056,913	+		Psyr_5105	0.11	+1.0
6,056,913	+		Psyr_5105	0.11	+0.3
6,056,913	+		Psyr_5105	0.11	-1.2
6,056,913	+		Psyr_5105	0.11	+0.9
6,056,913	+		Psyr_5105	0.11	-1.5
6,056,913	+		Psyr_5105	0.11	-1.3
6,056,913	+		Psyr_5105	0.11	+0.7
6,056,913	+		Psyr_5105	0.11	-1.7
6,056,913	+		Psyr_5105	0.11	+0.9
6,056,913	+		Psyr_5105	0.11	+0.1
6,056,913	+		Psyr_5105	0.11	-0.1
6,056,913	+		Psyr_5105	0.11	-3.1
6,056,914	-		Psyr_5105	0.11	+0.7
6,056,914	-		Psyr_5105	0.11	-0.8
6,056,914	-		Psyr_5105	0.11	+0.8
6,056,914	-		Psyr_5105	0.11	-0.1
6,056,914	-		Psyr_5105	0.11	+0.8
6,056,914	-		Psyr_5105	0.11	+0.9
6,056,914	-		Psyr_5105	0.11	+1.5
6,056,914	-		Psyr_5105	0.11	-1.6
6,056,914	-		Psyr_5105	0.11	-1.3
6,056,914	-		Psyr_5105	0.11	+2.7
6,056,914	-		Psyr_5105	0.11	-0.0
6,056,914	-		Psyr_5105	0.11	-2.0
6,056,914	-		Psyr_5105	0.11	+2.6
6,056,914	-		Psyr_5105	0.11	-0.8
6,056,920	+		Psyr_5105	0.11	+0.4
6,056,997	+		Psyr_5105	0.17	-0.5
6,056,998	-		Psyr_5105	0.17	+0.1
6,056,998	-		Psyr_5105	0.17	-1.1
6,056,998	-		Psyr_5105	0.17	-0.4
6,056,998	-		Psyr_5105	0.17	+1.2
6,056,998	-		Psyr_5105	0.17	+1.5
6,057,041	-		Psyr_5105	0.20	+2.8
6,057,186	+		Psyr_5105	0.31	-1.0
6,057,186	+		Psyr_5105	0.31	+0.2
6,057,186	+		Psyr_5105	0.31	-1.8
6,057,186	+		Psyr_5105	0.31	+0.6
6,057,186	+		Psyr_5105	0.31	-4.0
6,057,186	+		Psyr_5105	0.31	-0.0
6,057,187	-		Psyr_5105	0.31	+1.6
6,057,187	-		Psyr_5105	0.31	-0.0
6,057,187	-		Psyr_5105	0.31	-1.2
6,057,187	-		Psyr_5105	0.31	+0.5
6,057,289	+				+0.6
6,057,290	-		Psyr_5105	0.39	-2.8
6,057,338	+		Psyr_5105	0.42	-2.3
6,057,338	+		Psyr_5105	0.42	-0.1
6,057,338	+		Psyr_5105	0.42	+1.4
6,057,338	+		Psyr_5105	0.42	-0.4
6,057,338	+		Psyr_5105	0.42	-2.2
6,057,338	+		Psyr_5105	0.42	+0.2
6,057,338	+		Psyr_5105	0.42	-0.2
6,057,338	+		Psyr_5105	0.42	+0.1
6,057,338	+		Psyr_5105	0.42	+1.3
6,057,339	-		Psyr_5105	0.43	+0.5
6,057,339	-		Psyr_5105	0.43	-1.0
6,057,339	-		Psyr_5105	0.43	-1.4
6,057,339	-		Psyr_5105	0.43	-0.7
6,057,339	-		Psyr_5105	0.43	+0.8
6,057,339	-		Psyr_5105	0.43	-2.2
6,057,339	-		Psyr_5105	0.43	-1.9
6,057,339	-		Psyr_5105	0.43	+1.0
6,057,407	+		Psyr_5105	0.48	-2.8
6,057,407	+		Psyr_5105	0.48	+1.8
6,057,407	+		Psyr_5105	0.48	+0.9
6,057,407	+		Psyr_5105	0.48	-0.9
6,057,408	-		Psyr_5105	0.48	+1.6
6,057,408	-		Psyr_5105	0.48	-1.7
6,057,408	-		Psyr_5105	0.48	-0.5
6,057,489	+		Psyr_5105	0.54	+0.2
6,057,489	+		Psyr_5105	0.54	-1.0
6,057,489	+		Psyr_5105	0.54	-0.2
6,057,489	+		Psyr_5105	0.54	-2.8
6,057,489	+		Psyr_5105	0.54	+0.3
6,057,489	+		Psyr_5105	0.54	-1.3
6,057,489	+		Psyr_5105	0.54	-1.6
6,057,489	+		Psyr_5105	0.54	-0.5
6,057,489	+		Psyr_5105	0.54	-1.4
6,057,490	-		Psyr_5105	0.54	-0.6
6,057,490	-		Psyr_5105	0.54	-1.2
6,057,490	-		Psyr_5105	0.54	-0.0
6,057,490	-		Psyr_5105	0.54	+1.2
6,057,490	-		Psyr_5105	0.54	-2.5
6,057,490	-		Psyr_5105	0.54	+0.6
6,057,490	-		Psyr_5105	0.54	-3.5
6,057,490	-		Psyr_5105	0.54	-0.0
6,057,490	-		Psyr_5105	0.54	+0.9
6,057,490	-		Psyr_5105	0.54	-1.0
6,057,691	+		Psyr_5105	0.69	-2.3
6,057,692	-		Psyr_5105	0.69	-0.4
6,057,764	-		Psyr_5105	0.74	-1.8
6,057,794	-		Psyr_5105	0.76	+3.4
6,057,855	+		Psyr_5105	0.81	-2.2
6,057,856	-		Psyr_5105	0.81	+0.6
6,057,856	-		Psyr_5105	0.81	-0.8
6,057,856	-		Psyr_5105	0.81	+1.1
6,057,856	-		Psyr_5105	0.81	+0.1
6,057,856	-		Psyr_5105	0.81	+1.8
6,057,856	-		Psyr_5105	0.81	-3.5
6,057,856	-		Psyr_5105	0.81	-1.2
6,057,968	+		Psyr_5105	0.89	-1.1
6,058,072	+				-0.4
6,058,072	+				-0.8
6,058,073	-				+0.5
6,058,073	-				+1.0
6,058,073	-				+0.8
6,058,076	+				+1.8
6,058,076	+				-0.3
6,058,076	+				+0.3
6,058,076	+				+1.6
6,058,076	+				-0.8
6,058,076	+				+0.9
6,058,076	+				+0.2
6,058,077	-				+0.8
6,058,077	-				-0.0
6,058,077	-				-0.0
6,058,077	-				+0.4
6,058,079	+				+0.1
6,058,079	+				+2.2
6,058,080	-				-0.2
6,058,080	-				+1.1
6,058,216	+		Psyr_5106	0.11	+0.6
6,058,217	-		Psyr_5106	0.11	-2.2
6,058,217	-		Psyr_5106	0.11	-2.8
6,058,219	+		Psyr_5106	0.11	+1.3
6,058,219	+		Psyr_5106	0.11	-0.0
6,058,220	-		Psyr_5106	0.11	+3.3
6,058,220	-		Psyr_5106	0.11	-1.2
6,058,220	-		Psyr_5106	0.11	+0.6
6,058,431	+		Psyr_5106	0.32	+0.3
6,058,431	+		Psyr_5106	0.32	-1.4
6,058,432	-		Psyr_5106	0.32	-1.3
6,058,432	-		Psyr_5106	0.32	-1.6
6,058,480	+		Psyr_5106	0.37	-0.0
6,058,480	+		Psyr_5106	0.37	-1.7
6,058,480	+		Psyr_5106	0.37	-1.0
6,058,480	+		Psyr_5106	0.37	-0.4
6,058,480	+		Psyr_5106	0.37	-0.0
6,058,480	+		Psyr_5106	0.37	+2.1
6,058,481	-		Psyr_5106	0.37	-1.6
6,058,513	-		Psyr_5106	0.40	-0.8
6,058,564	+		Psyr_5106	0.45	-1.4
6,058,565	-		Psyr_5106	0.46	-0.1
6,058,565	-		Psyr_5106	0.46	-0.4
6,058,565	-		Psyr_5106	0.46	+0.9
6,058,601	-		Psyr_5106	0.49	+2.4
6,058,601	-		Psyr_5106	0.49	-0.4
6,058,606	+		Psyr_5106	0.50	-2.1
6,058,606	+		Psyr_5106	0.50	+3.4
6,058,607	-		Psyr_5106	0.50	+0.1
6,058,619	-		Psyr_5106	0.51	-0.2
6,058,732	-		Psyr_5106	0.62	+0.4
6,058,735	+		Psyr_5106	0.63	+1.8
6,058,735	+		Psyr_5106	0.63	-2.0
6,058,735	+		Psyr_5106	0.63	+1.6
6,058,735	+		Psyr_5106	0.63	+1.4
6,058,735	+		Psyr_5106	0.63	-0.1
6,058,736	-		Psyr_5106	0.63	-1.9
6,058,736	-		Psyr_5106	0.63	-1.4
6,058,736	-		Psyr_5106	0.63	-0.5
6,058,736	-		Psyr_5106	0.63	-0.2
6,058,736	-		Psyr_5106	0.63	-0.1
6,058,736	-		Psyr_5106	0.63	-1.6
6,058,736	-		Psyr_5106	0.63	+0.4
6,058,736	-		Psyr_5106	0.63	-2.1
6,058,736	-		Psyr_5106	0.63	+3.1
6,058,768	+		Psyr_5106	0.66	+2.0
6,058,768	+		Psyr_5106	0.66	-0.8
6,058,768	+		Psyr_5106	0.66	-3.1
6,058,768	+		Psyr_5106	0.66	+0.8
6,058,768	+		Psyr_5106	0.66	+0.2
6,058,768	+		Psyr_5106	0.66	-3.1
6,058,768	+		Psyr_5106	0.66	-1.8
6,058,768	+		Psyr_5106	0.66	-1.8
6,058,769	-		Psyr_5106	0.66	+0.6
6,058,769	-		Psyr_5106	0.66	-3.4
6,058,769	-		Psyr_5106	0.66	+1.5
6,058,769	-		Psyr_5106	0.66	-1.1
6,058,769	-		Psyr_5106	0.66	+0.9
6,059,074	+				-0.1
6,059,075	-				+0.4
6,059,104	+				+1.1
6,059,104	+				-2.5
6,059,105	-				-1.0