Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5045

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,986,078	+				+0.6
5,986,078	+				-2.6
5,986,079	-				+2.1
5,986,079	-				-0.2
5,986,177	+				+1.8
5,986,177	+				-2.0
5,986,177	+				+2.6
5,986,178	-				-0.2
5,986,178	-				-2.3
5,986,178	-				-2.8
5,986,178	-				+0.2
5,986,236	-		Psyr_5044	0.14	+0.2
5,986,236	-		Psyr_5044	0.14	-0.1
5,986,236	-		Psyr_5044	0.14	+0.5
5,986,583	+		Psyr_5044	0.52	+1.2
5,986,583	+		Psyr_5044	0.52	+1.7
5,986,583	+		Psyr_5044	0.52	+1.0
5,986,583	+		Psyr_5044	0.52	+2.6
5,986,584	-		Psyr_5044	0.52	+0.2
5,986,605	+		Psyr_5044	0.54	-2.3
5,986,631	+		Psyr_5044	0.57	+2.3
5,986,631	+		Psyr_5044	0.57	+0.7
5,986,631	+		Psyr_5044	0.57	-0.3
5,986,631	+		Psyr_5044	0.57	-0.9
5,986,631	+		Psyr_5044	0.57	-0.8
5,986,631	+		Psyr_5044	0.57	+0.2
5,986,632	-		Psyr_5044	0.57	-1.0
5,986,632	-		Psyr_5044	0.57	-0.8
5,986,632	-		Psyr_5044	0.57	-2.2
5,986,632	-		Psyr_5044	0.57	-0.8
5,986,632	-		Psyr_5044	0.57	-0.2
5,986,650	+		Psyr_5044	0.59	+0.2
5,986,650	+		Psyr_5044	0.59	-2.7
5,986,650	+		Psyr_5044	0.59	+2.0
5,986,650	+		Psyr_5044	0.59	-1.3
5,986,650	+		Psyr_5044	0.59	-1.6
5,986,650	+		Psyr_5044	0.59	+0.6
5,986,651	-		Psyr_5044	0.59	-0.8
5,986,651	-		Psyr_5044	0.59	-3.0
5,986,651	-		Psyr_5044	0.59	-2.0
5,986,651	-		Psyr_5044	0.59	-0.7
5,986,651	-		Psyr_5044	0.59	-1.3
5,986,651	-		Psyr_5044	0.59	+0.2
5,986,688	+		Psyr_5044	0.63	-0.3
5,986,688	+		Psyr_5044	0.63	+1.1
5,986,688	+		Psyr_5044	0.63	-0.0
5,986,688	+		Psyr_5044	0.63	+0.8
5,986,689	-		Psyr_5044	0.63	+0.3
5,986,689	-		Psyr_5044	0.63	-0.6
5,986,689	-		Psyr_5044	0.63	+1.6
5,986,689	-		Psyr_5044	0.63	+1.2
5,986,689	-		Psyr_5044	0.63	+1.0
5,986,766	+		Psyr_5044	0.72	+0.0
5,986,766	+		Psyr_5044	0.72	+1.8
5,986,766	+		Psyr_5044	0.72	+1.8
5,986,766	+		Psyr_5044	0.72	-2.3
5,986,766	+		Psyr_5044	0.72	-0.7
5,986,766	+		Psyr_5044	0.72	+2.3
5,986,766	+		Psyr_5044	0.72	-0.1
5,986,766	+		Psyr_5044	0.72	-0.3
5,986,767	-		Psyr_5044	0.72	+1.7
5,986,767	-		Psyr_5044	0.72	-0.7
5,986,767	-		Psyr_5044	0.72	-0.4
5,986,767	-		Psyr_5044	0.72	-1.9
5,986,767	-		Psyr_5044	0.72	-0.1
5,986,767	-		Psyr_5044	0.72	-0.0
5,986,767	-		Psyr_5044	0.72	-1.9
5,987,002	+				-0.1
5,987,002	+				-3.2
5,987,002	+				+1.2
5,987,002	+				-0.4
5,987,033	-				-0.8
5,987,097	+				-2.4
5,987,119	+		Psyr_5045	0.13	-0.4
5,987,150	+		Psyr_5045	0.19	-1.7
5,987,166	+		Psyr_5045	0.22	+1.6
5,987,166	+		Psyr_5045	0.22	+1.1
5,987,166	+		Psyr_5045	0.22	-1.2
5,987,166	+		Psyr_5045	0.22	-1.4
5,987,166	+		Psyr_5045	0.22	-0.7
5,987,166	+		Psyr_5045	0.22	+2.2
5,987,166	+		Psyr_5045	0.22	-2.1
5,987,166	+		Psyr_5045	0.22	-3.2
5,987,166	+		Psyr_5045	0.22	-0.1
5,987,166	+		Psyr_5045	0.22	+0.3
5,987,166	+		Psyr_5045	0.22	-1.0
5,987,166	+		Psyr_5045	0.22	+1.0
5,987,166	+		Psyr_5045	0.22	-0.4
5,987,167	-		Psyr_5045	0.22	-0.0
5,987,167	-		Psyr_5045	0.22	+0.4
5,987,167	-		Psyr_5045	0.22	-0.0
5,987,167	-		Psyr_5045	0.22	-0.2
5,987,167	-		Psyr_5045	0.22	-0.0
5,987,167	-		Psyr_5045	0.22	-0.4
5,987,167	-		Psyr_5045	0.22	-3.0
5,987,167	-		Psyr_5045	0.22	+1.2
5,987,167	-		Psyr_5045	0.22	-0.0
5,987,167	-		Psyr_5045	0.22	-0.4
5,987,167	-		Psyr_5045	0.22	+0.5
5,987,167	-		Psyr_5045	0.22	+0.7
5,987,167	-		Psyr_5045	0.22	-0.1
5,987,167	-		Psyr_5045	0.22	+1.5
5,987,167	-		Psyr_5045	0.22	+2.0
5,987,167	-		Psyr_5045	0.22	-0.9
5,987,167	-		Psyr_5045	0.22	+0.5
5,987,167	-		Psyr_5045	0.22	+1.4
5,987,167	-		Psyr_5045	0.22	+2.0
5,987,167	-		Psyr_5045	0.22	+0.2
5,987,170	+		Psyr_5045	0.22	-2.8
5,987,170	+		Psyr_5045	0.22	-1.2
5,987,170	+		Psyr_5045	0.22	+2.4
5,987,170	+		Psyr_5045	0.22	-0.8
5,987,170	+		Psyr_5045	0.22	+1.8
5,987,171	-		Psyr_5045	0.23	+1.2
5,987,171	-		Psyr_5045	0.23	+1.3
5,987,171	-		Psyr_5045	0.23	+0.1
5,987,278	+		Psyr_5045	0.42	+1.9
5,987,278	+		Psyr_5045	0.42	+1.9
5,987,279	-		Psyr_5045	0.43	+1.0
5,987,279	-		Psyr_5045	0.43	-1.2
5,987,279	-		Psyr_5045	0.43	-1.9
5,987,279	-		Psyr_5045	0.43	-0.2
5,987,279	-		Psyr_5045	0.43	+2.3
5,987,370	+		Psyr_5045	0.59	-0.5
5,987,370	+		Psyr_5045	0.59	+0.8
5,987,370	+		Psyr_5045	0.59	-1.8
5,987,370	+		Psyr_5045	0.59	+1.3
5,987,370	+		Psyr_5045	0.59	-1.6
5,987,370	+		Psyr_5045	0.59	+3.3
5,987,370	+		Psyr_5045	0.59	+3.1
5,987,370	+		Psyr_5045	0.59	+1.6
5,987,370	+		Psyr_5045	0.59	-1.2
5,987,370	+		Psyr_5045	0.59	-1.0
5,987,370	+		Psyr_5045	0.59	+0.1
5,987,370	+		Psyr_5045	0.59	+1.2
5,987,370	+		Psyr_5045	0.59	-0.4
5,987,371	-		Psyr_5045	0.59	-1.0
5,987,371	-		Psyr_5045	0.59	-2.3
5,987,371	-		Psyr_5045	0.59	+1.7
5,987,371	-		Psyr_5045	0.59	+0.2
5,987,371	-		Psyr_5045	0.59	+1.1
5,987,371	-		Psyr_5045	0.59	+0.2
5,987,371	-		Psyr_5045	0.59	+2.0
5,987,371	-		Psyr_5045	0.59	+1.0
5,987,371	-		Psyr_5045	0.59	+1.6
5,987,371	-		Psyr_5045	0.59	-2.3
5,987,593	+				+0.2
5,987,593	+				+0.1
5,987,594	-				-1.2
5,987,631	+				+0.4
5,987,631	+				+1.5
5,987,632	-				-1.1
5,987,649	-				-0.4
5,987,649	-				+2.5
5,987,649	-				-0.4
5,987,668	+				+1.7
5,987,676	-				+1.3
5,987,676	-				+1.0
5,987,676	-				+0.8
5,987,676	-				-1.4
5,987,696	+				+1.3
5,987,696	+				-0.3
5,987,696	+				-0.5
5,987,697	-				+0.6
5,987,697	-				+0.4
5,987,722	+		Psyr_5046	0.20	-2.3
5,987,722	+		Psyr_5046	0.20	-0.0
5,987,723	-		Psyr_5046	0.20	-0.7
5,987,723	-		Psyr_5046	0.20	-1.2
5,987,723	-		Psyr_5046	0.20	-2.3
5,987,786	+		Psyr_5046	0.46	+0.5
5,987,786	+		Psyr_5046	0.46	-0.8
5,987,786	+		Psyr_5046	0.46	+0.8
5,987,786	+		Psyr_5046	0.46	+0.9
5,987,786	+		Psyr_5046	0.46	-1.6
5,987,786	+		Psyr_5046	0.46	+0.0
5,987,786	+		Psyr_5046	0.46	+0.2
5,987,787	-		Psyr_5046	0.46	+0.9
5,987,787	-		Psyr_5046	0.46	-1.9
5,987,787	-		Psyr_5046	0.46	+0.3
5,987,934	+				+0.4
5,987,934	+				-2.7
5,987,934	+				+0.3
5,987,934	+				-0.3
5,987,934	+				-2.0
5,987,934	+				+0.6
5,987,935	-				-0.0
5,987,935	-				-0.1
5,987,937	+				+2.0
5,987,937	+				-1.2
5,987,937	+				+0.6
5,987,937	+				-2.4
5,987,937	+				+0.7
5,987,937	+				-1.4
5,987,937	+				-2.0
5,987,937	+				+0.2
5,987,937	+				+1.2
5,987,937	+				+1.7
5,987,938	-				-1.6
5,987,938	-				-0.8
5,987,938	-				+0.2
5,987,938	-				+1.8
5,987,938	-				-0.0
5,987,938	-				+1.3
5,987,945	+				-0.8
5,987,945	+				-0.0
5,987,946	-				-0.2
5,987,957	-				+0.9
5,987,957	-				-0.1
5,987,959	+				+0.9
5,987,959	+				+1.5
5,987,960	-				+1.4
5,987,973	+				+0.4
5,987,973	+				-1.8
5,987,973	+				+2.2
5,987,973	+				-0.8
5,987,973	+				+2.1
5,987,973	+				+1.9
5,987,973	+				+0.6
5,987,973	+				+0.5
5,987,973	+				-0.8
5,987,973	+				+0.1
5,987,973	+				+1.8
5,987,974	-				+1.9
5,987,974	-				+1.8
5,987,974	-				+1.0
5,987,974	-				-2.0
5,987,979	+				-0.2
5,987,980	-				-1.9
5,987,980	-				-1.1
5,988,118	-				-0.1
5,988,118	-				+1.1
5,988,118	-				-1.2
5,988,118	-				-1.6
5,988,118	-				-2.0
5,988,277	+				-3.2