Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4976

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,901,158	+				+0.8
5,901,158	+				+0.4
5,901,159	-				+0.2
5,901,159	-				+2.7
5,901,254	+				+0.5
5,901,255	-				-0.0
5,901,255	-				-0.6
5,901,320	+				-0.1
5,901,320	+				+1.3
5,901,320	+				-0.3
5,901,321	-				-2.5
5,901,321	-				-0.4
5,901,332	+				+0.1
5,901,332	+				-0.1
5,901,340	-				+1.0
5,901,348	+				+0.0
5,901,397	-				+0.3
5,901,433	+		Psyr_4975	0.14	-1.8
5,901,437	+		Psyr_4975	0.14	+3.9
5,901,437	+		Psyr_4975	0.14	+0.8
5,901,438	-		Psyr_4975	0.14	-2.1
5,901,438	-		Psyr_4975	0.14	-0.3
5,901,476	+		Psyr_4975	0.20	+0.3
5,901,476	+		Psyr_4975	0.20	-0.7
5,901,476	+		Psyr_4975	0.20	+1.7
5,901,477	-		Psyr_4975	0.20	+2.0
5,901,478	+		Psyr_4975	0.20	+1.9
5,901,478	+		Psyr_4975	0.20	-2.0
5,901,478	+		Psyr_4975	0.20	-2.0
5,901,478	+		Psyr_4975	0.20	+1.2
5,901,479	-		Psyr_4975	0.20	+0.2
5,901,479	-		Psyr_4975	0.20	+2.6
5,901,479	-		Psyr_4975	0.20	-1.6
5,901,479	-		Psyr_4975	0.20	-3.3
5,901,479	-		Psyr_4975	0.20	+1.2
5,901,479	-		Psyr_4975	0.20	+0.6
5,901,479	-		Psyr_4975	0.20	+0.6
5,901,479	-		Psyr_4975	0.20	+1.8
5,901,483	-		Psyr_4975	0.21	+1.8
5,901,487	+		Psyr_4975	0.21	+1.1
5,901,488	-		Psyr_4975	0.21	-2.7
5,901,502	+		Psyr_4975	0.23	+1.9
5,901,503	-		Psyr_4975	0.23	-1.2
5,901,511	+		Psyr_4975	0.25	-0.7
5,901,511	+		Psyr_4975	0.25	-1.1
5,901,511	+		Psyr_4975	0.25	+1.2
5,901,511	+		Psyr_4975	0.25	-1.9
5,901,511	+		Psyr_4975	0.25	+1.7
5,901,512	-		Psyr_4975	0.25	-0.2
5,901,512	-		Psyr_4975	0.25	-0.4
5,901,512	-		Psyr_4975	0.25	-3.2
5,901,512	-		Psyr_4975	0.25	-1.2
5,901,512	-		Psyr_4975	0.25	-0.9
5,901,512	-		Psyr_4975	0.25	+0.0
5,901,512	-		Psyr_4975	0.25	-3.0
5,901,512	-		Psyr_4975	0.25	+1.9
5,901,514	-		Psyr_4975	0.25	+0.6
5,901,525	+		Psyr_4975	0.27	+0.9
5,901,564	+		Psyr_4975	0.32	-1.6
5,901,569	+		Psyr_4975	0.33	-1.0
5,901,569	+		Psyr_4975	0.33	+0.7
5,901,569	+		Psyr_4975	0.33	-0.5
5,901,569	+		Psyr_4975	0.33	+2.3
5,901,570	-		Psyr_4975	0.33	-1.4
5,901,574	+		Psyr_4975	0.33	-1.9
5,901,575	-		Psyr_4975	0.33	-2.0
5,901,575	-		Psyr_4975	0.33	+1.1
5,901,624	+		Psyr_4975	0.40	-0.2
5,901,648	+		Psyr_4975	0.44	-1.6
5,901,649	-		Psyr_4975	0.44	-1.0
5,901,649	-		Psyr_4975	0.44	+1.8
5,901,650	+		Psyr_4975	0.44	-0.9
5,901,662	-		Psyr_4975	0.46	+0.3
5,901,662	-		Psyr_4975	0.46	+1.3
5,901,738	+		Psyr_4975	0.56	-1.7
5,901,763	+		Psyr_4975	0.60	-0.4
5,901,763	+		Psyr_4975	0.60	+0.8
5,901,764	-		Psyr_4975	0.60	-1.4
5,901,766	-		Psyr_4975	0.60	-1.7
5,901,845	+		Psyr_4975	0.71	+0.3
5,901,846	-		Psyr_4975	0.71	-1.4
5,901,846	-		Psyr_4975	0.71	+1.0
5,901,846	-		Psyr_4975	0.71	+0.9
5,901,864	+		Psyr_4975	0.74	-1.2
5,901,884	+		Psyr_4975	0.76	+0.9
5,901,885	-		Psyr_4975	0.77	+0.2
5,901,885	-		Psyr_4975	0.77	+1.8
5,901,892	+		Psyr_4975	0.78	-2.2
5,901,892	+		Psyr_4975	0.78	-0.2
5,901,892	+		Psyr_4975	0.78	-0.0
5,901,892	+		Psyr_4975	0.78	-1.4
5,901,893	-		Psyr_4975	0.78	-0.4
5,901,893	-		Psyr_4975	0.78	-0.0
5,901,893	-		Psyr_4975	0.78	-0.1
5,901,945	+		Psyr_4975	0.85	-2.2
5,901,945	+		Psyr_4975	0.85	-0.8
5,901,945	+		Psyr_4975	0.85	-2.6
5,901,945	+		Psyr_4975	0.85	+0.9
5,902,051	+				-0.0
5,902,051	+				+0.4
5,902,077	+				-2.8
5,902,077	+				-0.4
5,902,077	+				+1.6
5,902,077	+				-0.1
5,902,078	-				-0.3
5,902,078	-				-0.4
5,902,078	-				-1.9
5,902,078	-				-0.3
5,902,078	-				-2.4
5,902,078	-				-1.1
5,902,078	-				-3.4
5,902,078	-				+0.7
5,902,078	-				-1.6
5,902,078	-				+0.5
5,902,078	-				+0.8
5,902,078	-				+0.6
5,902,078	-				+0.6
5,902,078	-				+0.4
5,902,087	+				+1.6
5,902,087	+				+0.2
5,902,087	+				-2.0
5,902,087	+				+0.4
5,902,087	+				-2.7
5,902,087	+				-2.3
5,902,087	+				+2.2
5,902,088	-				+0.8
5,902,088	-				-0.4
5,902,088	-				+0.3
5,902,091	+				+0.6
5,902,140	+				-3.2
5,902,140	+				-1.7
5,902,140	+				-1.8
5,902,140	+				-1.6
5,902,140	+				+1.8
5,902,140	+				-1.2
5,902,141	-				+2.1
5,902,141	-				+1.6
5,902,141	-				+1.0
5,902,141	-				-1.6
5,902,141	-				-0.6
5,902,141	-				+1.6
5,902,185	-		Psyr_4976	0.12	-1.9
5,902,185	-		Psyr_4976	0.12	-1.2
5,902,188	+		Psyr_4976	0.13	+0.6
5,902,189	-		Psyr_4976	0.13	+0.1
5,902,239	+		Psyr_4976	0.22	+0.4
5,902,239	+		Psyr_4976	0.22	+1.6
5,902,239	+		Psyr_4976	0.22	-2.2
5,902,239	+		Psyr_4976	0.22	-1.2
5,902,240	-		Psyr_4976	0.22	-0.3
5,902,240	-		Psyr_4976	0.22	-0.5
5,902,240	-		Psyr_4976	0.22	-0.0
5,902,240	-		Psyr_4976	0.22	-1.9
5,902,353	+		Psyr_4976	0.42	-2.2
5,902,354	-		Psyr_4976	0.43	-0.4
5,902,354	-		Psyr_4976	0.43	-2.4
5,902,354	-		Psyr_4976	0.43	+0.5
5,902,562	+		Psyr_4976	0.80	+0.8
5,902,563	-		Psyr_4976	0.80	-0.8
5,902,575	+		Psyr_4976	0.82	-1.8
5,902,576	-		Psyr_4976	0.83	+0.6
5,902,576	-		Psyr_4976	0.83	+2.2
5,902,576	-		Psyr_4976	0.83	-2.4
5,902,576	-		Psyr_4976	0.83	+0.3
5,902,576	-		Psyr_4976	0.83	-0.6
5,902,576	-		Psyr_4976	0.83	-1.4
5,902,576	-		Psyr_4976	0.83	-0.0
5,902,644	+				-0.2
5,902,644	+				-0.3
5,902,644	+				+1.0
5,902,645	-				+0.2
5,902,645	-				-3.3
5,902,645	-				-0.0
5,902,645	-				+0.2
5,902,698	-				-0.4
5,902,699	+				+3.2
5,902,699	+				-2.8
5,902,699	+				-1.1
5,902,699	+				+0.6
5,902,699	+				-0.2
5,902,699	+				-1.7
5,902,699	+				+0.2
5,902,699	+				-0.9
5,902,699	+				-0.6
5,902,700	-				-1.6
5,902,700	-				+2.6
5,902,700	-				+2.0
5,902,700	-				-0.3
5,902,700	-				+0.1
5,902,700	-				-2.6
5,902,700	-				-1.0
5,902,750	+				-0.5
5,902,751	-				+0.4
5,902,752	+				+1.2
5,902,752	+				-0.0
5,902,752	+				+0.2
5,902,753	-				+0.1
5,902,753	-				-1.6
5,902,753	-				+1.6
5,902,753	-				+0.8
5,902,763	+				+1.1
5,902,763	+				+1.0
5,902,764	-				+1.4
5,902,764	-				+0.6
5,902,775	+				-2.2
5,902,775	+				-1.2
5,902,775	+				-0.8
5,902,775	+				-1.6
5,902,775	+				-1.4
5,902,776	-				-2.0
5,902,776	-				+1.3
5,902,776	-				-1.6
5,902,776	-				-1.1
5,902,776	-				+1.3
5,902,776	-				-2.4
5,902,776	-				+0.6
5,902,776	-				-0.6
5,902,777	+				+0.8
5,902,777	+				-1.1
5,902,777	+				-1.0
5,902,777	+				-1.8
5,902,777	+				+0.6
5,902,777	+				+1.6
5,902,777	+				+1.7
5,902,777	+				-2.8
5,902,777	+				+0.9
5,902,777	+				+0.2
5,902,778	-				+1.5
5,902,778	-				-1.1
5,902,778	-				+1.6
5,902,778	-				+0.4
5,902,778	-				+1.9
5,902,778	-				+2.9
5,902,778	-				+3.1
5,902,778	-				-0.6
5,902,778	-				-1.9
5,902,778	-				+2.8
5,902,778	-				-2.5
5,902,778	-				-0.2
5,902,826	+				-1.2
5,902,826	+				+1.0
5,902,868	+				-0.8
5,902,868	+				+0.9
5,902,868	+				+0.0
5,902,882	+				-0.5
5,902,882	+				-2.9
5,902,986	+				-1.6
5,903,023	+				+0.2
5,903,024	-				+0.4
5,903,062	+				+1.5
5,903,063	-				+1.2
5,903,063	-				+0.1
5,903,063	-				+1.2
5,903,103	+				-2.3
5,903,104	-				-0.8
5,903,104	-				+0.3
5,903,107	+				-1.0
5,903,107	+				+1.1
5,903,108	-				+1.6
5,903,142	-				+2.2
5,903,183	+				-0.5
5,903,261	+				+3.0
5,903,262	-				-1.9
5,903,266	-				-1.4
5,903,456	-		Psyr_4977	0.21	-0.0
5,903,460	+		Psyr_4977	0.21	+1.4
5,903,460	+		Psyr_4977	0.21	+0.6
5,903,460	+		Psyr_4977	0.21	-0.7
5,903,460	+		Psyr_4977	0.21	+0.9
5,903,460	+		Psyr_4977	0.21	-0.2
5,903,461	-		Psyr_4977	0.21	+1.0
5,903,525	+		Psyr_4977	0.27	+1.7
5,903,525	+		Psyr_4977	0.27	+1.1
5,903,525	+		Psyr_4977	0.27	-1.9
5,903,526	-		Psyr_4977	0.27	+2.7
5,903,654	-		Psyr_4977	0.40	-2.0
5,903,654	-		Psyr_4977	0.40	-2.8
5,903,654	-		Psyr_4977	0.40	+1.6
5,903,654	-		Psyr_4977	0.40	+1.4