Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4872

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,782,959	+		Psyr_4871	0.73	-1.1
5,782,960	-		Psyr_4871	0.73	-1.3
5,782,960	-		Psyr_4871	0.73	+0.1
5,782,968	+		Psyr_4871	0.73	+0.3
5,782,968	+		Psyr_4871	0.73	+0.0
5,782,969	-		Psyr_4871	0.74	+0.3
5,782,969	-		Psyr_4871	0.74	+0.2
5,782,993	+		Psyr_4871	0.76	+1.9
5,782,993	+		Psyr_4871	0.76	+0.6
5,782,994	-		Psyr_4871	0.76	+1.3
5,783,154	+				-2.0
5,783,223	+				+0.7
5,783,223	+				+0.0
5,783,224	-				+1.8
5,783,224	-				+0.1
5,783,274	-				+0.3
5,783,274	-				-1.0
5,783,330	+				+0.4
5,783,330	+				-1.9
5,783,330	+				-2.7
5,783,330	+				-2.8
5,783,334	+				-1.9
5,783,334	+				-3.1
5,783,334	+				-2.9
5,783,334	+				+0.0
5,783,376	+				-0.9
5,783,376	+				-0.1
5,783,376	+				-1.2
5,783,377	-				+0.6
5,783,377	-				-0.3
5,783,377	-				-2.1
5,783,377	-				-2.9
5,783,377	-				-1.8
5,783,377	-				-0.5
5,783,377	-				+0.2
5,783,377	-				-1.4
5,783,463	+				-0.2
5,783,463	+				-0.0
5,783,463	+				-0.4
5,783,463	+				+1.1
5,783,464	-				+0.6
5,783,464	-				+1.7
5,783,464	-				+1.2
5,783,464	-				+1.3
5,783,464	-				-1.6
5,783,464	-				-0.8
5,783,464	-				-0.1
5,783,464	-				-0.8
5,783,464	-				+0.1
5,783,470	+				-0.2
5,783,470	+				+1.5
5,783,470	+				-2.0
5,783,575	+				+0.6
5,783,575	+				+1.1
5,783,576	-				+2.6
5,783,576	-				-2.5
5,783,576	-				+0.1
5,783,576	-				-1.6
5,783,682	+				-1.6
5,783,682	+				+0.0
5,783,682	+				-0.2
5,783,683	-				+1.0
5,783,683	-				-2.6
5,783,683	-				-0.5
5,783,704	+				+0.0
5,783,704	+				-0.6
5,783,704	+				-1.6
5,783,704	+				-0.5
5,783,704	+				-0.6
5,783,704	+				-1.4
5,783,705	-				-2.2
5,783,705	-				-0.4
5,783,705	-				+0.1
5,783,705	-				+2.9
5,783,705	-				-0.4
5,783,705	-				-0.4
5,783,737	-				+0.7
5,783,903	-				-1.2
5,783,912	-				+0.2
5,783,912	-				+0.0
5,783,912	-				+1.1
5,783,967	-				-3.4
5,784,018	-				+1.0
5,784,020	+				-1.5
5,784,021	-				-2.0
5,784,024	-				-1.9
5,784,026	+				-3.2
5,784,039	+				-0.6
5,784,039	+				+2.4
5,784,111	+		Psyr_4872	0.14	+0.4
5,784,111	+		Psyr_4872	0.14	-3.1
5,784,112	-		Psyr_4872	0.14	-1.9
5,784,140	+		Psyr_4872	0.16	-0.4
5,784,140	+		Psyr_4872	0.16	-0.4
5,784,140	+		Psyr_4872	0.16	-1.7
5,784,140	+		Psyr_4872	0.16	-1.3
5,784,140	+		Psyr_4872	0.16	+0.9
5,784,141	-		Psyr_4872	0.17	-0.7
5,784,141	-		Psyr_4872	0.17	+0.8
5,784,141	-		Psyr_4872	0.17	+0.5
5,784,141	-		Psyr_4872	0.17	+0.8
5,784,141	-		Psyr_4872	0.17	-0.9
5,784,141	-		Psyr_4872	0.17	-3.1
5,784,141	-		Psyr_4872	0.17	-1.9
5,784,142	+		Psyr_4872	0.17	+1.1
5,784,142	+		Psyr_4872	0.17	-1.2
5,784,142	+		Psyr_4872	0.17	+0.0
5,784,142	+		Psyr_4872	0.17	-1.2
5,784,142	+		Psyr_4872	0.17	-0.2
5,784,142	+		Psyr_4872	0.17	+1.3
5,784,143	-		Psyr_4872	0.17	-0.2
5,784,143	-		Psyr_4872	0.17	-0.5
5,784,143	-		Psyr_4872	0.17	-2.1
5,784,143	-		Psyr_4872	0.17	-0.2
5,784,143	-		Psyr_4872	0.17	+2.0
5,784,143	-		Psyr_4872	0.17	-0.1
5,784,143	-		Psyr_4872	0.17	-0.8
5,784,217	-		Psyr_4872	0.22	+0.9
5,784,252	+		Psyr_4872	0.25	+0.2
5,784,269	+		Psyr_4872	0.26	-2.3
5,784,269	+		Psyr_4872	0.26	-0.7
5,784,293	+		Psyr_4872	0.28	-1.4
5,784,294	-		Psyr_4872	0.28	+1.4
5,784,294	-		Psyr_4872	0.28	-0.5
5,784,319	+		Psyr_4872	0.30	-0.7
5,784,319	+		Psyr_4872	0.30	-1.3
5,784,361	-		Psyr_4872	0.33	-0.9
5,784,361	-		Psyr_4872	0.33	-3.6
5,784,361	-		Psyr_4872	0.33	+0.0
5,784,361	-		Psyr_4872	0.33	+0.2
5,784,362	+		Psyr_4872	0.33	+4.1
5,784,390	-		Psyr_4872	0.35	+1.0
5,784,396	-		Psyr_4872	0.36	+0.3
5,784,396	-		Psyr_4872	0.36	+1.4
5,784,502	+		Psyr_4872	0.44	-1.0
5,784,503	-		Psyr_4872	0.44	-0.4
5,784,503	-		Psyr_4872	0.44	+0.7
5,784,503	-		Psyr_4872	0.44	+0.9
5,784,503	-		Psyr_4872	0.44	-1.5
5,784,510	+		Psyr_4872	0.44	+0.3
5,784,592	+		Psyr_4872	0.51	-1.0
5,784,592	+		Psyr_4872	0.51	+1.0
5,784,592	+		Psyr_4872	0.51	-1.6
5,784,592	+		Psyr_4872	0.51	-2.1
5,784,592	+		Psyr_4872	0.51	-1.7
5,784,592	+		Psyr_4872	0.51	-3.0
5,784,592	+		Psyr_4872	0.51	+2.5
5,784,593	-		Psyr_4872	0.51	+1.3
5,784,593	-		Psyr_4872	0.51	+0.1
5,784,593	-		Psyr_4872	0.51	-2.2
5,784,593	-		Psyr_4872	0.51	+0.8
5,784,593	-		Psyr_4872	0.51	-2.5
5,784,593	-		Psyr_4872	0.51	-1.5
5,784,593	-		Psyr_4872	0.51	+2.0
5,784,593	-		Psyr_4872	0.51	+1.0
5,784,593	-		Psyr_4872	0.51	-0.7
5,784,601	+		Psyr_4872	0.51	-0.7
5,784,601	+		Psyr_4872	0.51	+2.3
5,784,601	+		Psyr_4872	0.51	-3.0
5,784,601	+		Psyr_4872	0.51	-0.1
5,784,601	+		Psyr_4872	0.51	-0.8
5,784,601	+		Psyr_4872	0.51	-1.0
5,784,601	+		Psyr_4872	0.51	-0.8
5,784,601	+		Psyr_4872	0.51	+1.7
5,784,602	-		Psyr_4872	0.51	+0.5
5,784,602	-		Psyr_4872	0.51	+2.2
5,784,602	-		Psyr_4872	0.51	+2.3
5,784,602	-		Psyr_4872	0.51	+2.6
5,784,602	-		Psyr_4872	0.51	+0.0
5,784,602	-		Psyr_4872	0.51	-2.3
5,784,602	-		Psyr_4872	0.51	-0.5
5,784,605	+		Psyr_4872	0.52	-0.7
5,784,606	-		Psyr_4872	0.52	+0.6
5,784,666	+		Psyr_4872	0.56	+0.5
5,784,666	+		Psyr_4872	0.56	-0.4
5,784,666	+		Psyr_4872	0.56	+0.2
5,784,666	+		Psyr_4872	0.56	-2.8
5,784,666	+		Psyr_4872	0.56	+0.8
5,784,667	-		Psyr_4872	0.56	+0.3
5,784,667	-		Psyr_4872	0.56	+0.2
5,784,667	-		Psyr_4872	0.56	-2.8
5,784,667	-		Psyr_4872	0.56	+3.7
5,784,710	-		Psyr_4872	0.60	-1.2
5,784,735	+		Psyr_4872	0.61	+0.6
5,784,735	+		Psyr_4872	0.61	-3.3
5,784,736	-		Psyr_4872	0.62	-0.5
5,784,738	-		Psyr_4872	0.62	-0.6
5,784,824	+		Psyr_4872	0.68	-1.9
5,784,827	+		Psyr_4872	0.68	+0.0
5,784,827	+		Psyr_4872	0.68	+1.3
5,784,827	+		Psyr_4872	0.68	-3.0
5,784,827	+		Psyr_4872	0.68	-1.4
5,784,828	-		Psyr_4872	0.68	-0.6
5,784,828	-		Psyr_4872	0.68	+0.0
5,784,832	-		Psyr_4872	0.69	-1.2
5,784,832	-		Psyr_4872	0.69	+0.4
5,784,832	-		Psyr_4872	0.69	-2.0
5,784,832	-		Psyr_4872	0.69	+0.9
5,784,888	-		Psyr_4872	0.73	+0.4
5,785,077	+		Psyr_4872	0.87	+2.2
5,785,077	+		Psyr_4872	0.87	-1.4
5,785,078	-		Psyr_4872	0.87	+0.6
5,785,111	+		Psyr_4872	0.90	-0.5
5,785,118	+				+1.4
5,785,192	+				-0.2
5,785,211	+				-0.9
5,785,211	+				+0.2
5,785,212	-				-0.4
5,785,230	+				+0.9
5,785,231	-				+0.2
5,785,231	-				+1.2
5,785,231	-				+1.9
5,785,244	+				+0.9
5,785,245	-				-1.0
5,785,308	+				-2.0
5,785,308	+				+0.4
5,785,334	+				-1.3
5,785,334	+				+1.9
5,785,334	+				-1.4
5,785,334	+				+1.7
5,785,334	+				+1.0
5,785,335	-				+3.4
5,785,335	-				-0.2
5,785,335	-				+1.5
5,785,349	-				+0.3
5,785,349	-				+1.2
5,785,349	-				-0.6
5,785,438	+				+1.5
5,785,438	+				+1.6
5,785,438	+				+0.8
5,785,438	+				-0.6
5,785,438	+				-0.2
5,785,438	+				-1.9
5,785,438	+				+1.7
5,785,438	+				-0.7
5,785,439	-				+0.8
5,785,439	-				-3.5
5,785,439	-				-2.9
5,785,439	-				+0.5
5,785,439	-				+0.3
5,785,439	-				-1.2
5,785,439	-				-1.4
5,785,440	+				+2.0
5,785,440	+				+2.4
5,785,440	+				-1.7
5,785,440	+				+0.2
5,785,440	+				-0.4
5,785,440	+				+4.9
5,785,440	+				-1.6
5,785,440	+				-0.2
5,785,440	+				-1.6
5,785,440	+				-1.7
5,785,440	+				+0.7
5,785,441	-				-1.6
5,785,441	-				+2.6
5,785,441	-				+0.3
5,785,441	-				-3.2
5,785,441	-				-1.8
5,785,441	-				-0.4
5,785,441	-				-0.4
5,785,441	-				+1.9
5,785,441	-				+0.5
5,785,441	-				-0.6
5,785,441	-				-0.4
5,785,441	-				+1.1
5,785,441	-				-1.0
5,785,441	-				-1.6
5,785,441	-				+0.4
5,785,441	-				+2.0
5,785,442	+				-0.4
5,785,442	+				+1.6
5,785,442	+				+0.7
5,785,442	+				-1.9
5,785,442	+				+0.7
5,785,442	+				+0.6
5,785,442	+				-0.4
5,785,442	+				+0.9
5,785,442	+				+0.6
5,785,442	+				-1.2
5,785,442	+				+0.2
5,785,442	+				+1.4
5,785,442	+				+0.4
5,785,442	+				-0.0
5,785,442	+				-1.9
5,785,443	-				+1.3
5,785,443	-				-0.2
5,785,443	-				+2.4
5,785,443	-				-1.4
5,785,443	-				+2.0
5,785,443	-				+2.5
5,785,443	-				+1.1
5,785,443	-				+2.3
5,785,443	-				+1.0
5,785,443	-				-1.4
5,785,443	-				+0.8
5,785,443	-				+0.9
5,785,443	-				+0.3
5,785,444	+				-1.4
5,785,444	+				-2.6
5,785,444	+				+0.2
5,785,444	+				+0.3
5,785,444	+				+1.5
5,785,445	-				+0.3
5,785,445	-				+1.6
5,785,445	-				+0.0
5,785,445	-				+4.0
5,785,445	-				+1.6
5,785,445	-				+0.7
5,785,445	-				+2.4
5,785,508	-				+0.4
5,785,532	+				-1.9
5,785,532	+				-1.3
5,785,532	+				+1.3
5,785,532	+				+2.1
5,785,533	-				+0.3
5,785,723	+		Psyr_4873	0.58	-1.1
5,785,723	+		Psyr_4873	0.58	+0.8
5,785,723	+		Psyr_4873	0.58	-3.1
5,785,723	+		Psyr_4873	0.58	+1.6
5,785,724	-		Psyr_4873	0.59	-1.6
5,785,724	-		Psyr_4873	0.59	-1.0
5,785,724	-		Psyr_4873	0.59	+2.0
5,785,741	+		Psyr_4873	0.67	+0.9
5,785,741	+		Psyr_4873	0.67	-2.3
5,785,741	+		Psyr_4873	0.67	-2.1
5,785,741	+		Psyr_4873	0.67	-1.2
5,785,741	+		Psyr_4873	0.67	-0.6
5,785,741	+		Psyr_4873	0.67	+0.6
5,785,741	+		Psyr_4873	0.67	-0.0
5,785,741	+		Psyr_4873	0.67	+1.0
5,785,741	+		Psyr_4873	0.67	-0.3
5,785,741	+		Psyr_4873	0.67	-1.5
5,785,741	+		Psyr_4873	0.67	+3.7
5,785,741	+		Psyr_4873	0.67	-2.1
5,785,742	-		Psyr_4873	0.67	+0.1
5,785,742	-		Psyr_4873	0.67	+1.7
5,785,742	-		Psyr_4873	0.67	+3.1
5,785,742	-		Psyr_4873	0.67	-0.9
5,785,742	-		Psyr_4873	0.67	+1.1
5,785,742	-		Psyr_4873	0.67	+0.3
5,785,742	-		Psyr_4873	0.67	+2.1
5,785,742	-		Psyr_4873	0.67	+0.2
5,785,742	-		Psyr_4873	0.67	+0.2
5,785,742	-		Psyr_4873	0.67	-2.6
5,785,742	-		Psyr_4873	0.67	-2.3
5,785,742	-		Psyr_4873	0.67	+1.4
5,785,807	-				-1.3
5,785,840	+				-0.7
5,785,841	-				-0.4
5,785,854	+				+0.5
5,785,854	+				+2.6
5,785,854	+				+1.1
5,785,854	+				+1.0
5,785,854	+				-0.4
5,785,855	-				+1.5
5,785,855	-				+0.0
5,785,855	-				-0.7
5,785,855	-				+0.0
5,785,855	-				-0.5
5,785,855	-				+0.3
5,785,855	-				+0.1
5,785,855	-				+0.7
5,786,093	-		Psyr_4874	0.31	-1.6