Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4871

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,781,181	+		Psyr_4870	0.30	-0.8
5,781,187	+		Psyr_4870	0.30	+0.9
5,781,188	-		Psyr_4870	0.31	-0.1
5,781,336	-		Psyr_4870	0.44	-1.6
5,781,377	+		Psyr_4870	0.48	+1.2
5,781,378	-		Psyr_4870	0.48	-2.0
5,781,392	+		Psyr_4870	0.49	-0.1
5,781,401	-		Psyr_4870	0.50	-1.8
5,781,401	-		Psyr_4870	0.50	-1.2
5,781,402	+		Psyr_4870	0.50	+0.2
5,781,403	-		Psyr_4870	0.50	-0.4
5,781,403	-		Psyr_4870	0.50	-1.1
5,781,403	-		Psyr_4870	0.50	-0.4
5,781,460	-		Psyr_4870	0.56	-0.2
5,781,529	+		Psyr_4870	0.62	+0.0
5,781,531	+		Psyr_4870	0.62	-0.1
5,781,531	+		Psyr_4870	0.62	-0.3
5,781,531	+		Psyr_4870	0.62	+2.0
5,781,531	+		Psyr_4870	0.62	-0.7
5,781,531	+		Psyr_4870	0.62	+1.2
5,781,559	-		Psyr_4870	0.65	-0.8
5,781,559	-		Psyr_4870	0.65	+0.8
5,781,648	+		Psyr_4870	0.73	+0.0
5,781,649	-		Psyr_4870	0.73	+0.5
5,781,762	-		Psyr_4870	0.84	-1.0
5,781,897	+				+2.0
5,781,904	-				+1.2
5,781,904	-				-1.8
5,781,953	-				+1.1
5,781,953	-				-1.8
5,781,953	-				-0.4
5,781,953	-				+0.6
5,781,953	-				+0.2
5,781,953	-				+0.6
5,781,953	-				+1.6
5,781,953	-				+0.6
5,781,993	+				-0.5
5,781,993	+				+0.6
5,782,009	+				-0.8
5,782,009	+				-1.0
5,782,013	+				-0.7
5,782,013	+				+1.2
5,782,080	+				+0.6
5,782,095	+				-0.3
5,782,095	+				+2.2
5,782,095	+				-0.9
5,782,095	+				-2.4
5,782,095	+				+1.7
5,782,095	+				+0.7
5,782,095	+				+1.3
5,782,095	+				+1.8
5,782,095	+				+0.6
5,782,096	-				-2.5
5,782,096	-				+3.2
5,782,101	+				-2.0
5,782,101	+				+1.1
5,782,102	-				+0.1
5,782,102	-				-0.1
5,782,124	+				+0.6
5,782,125	-				-3.2
5,782,125	-				+0.3
5,782,171	+				+0.3
5,782,172	-				-0.4
5,782,216	-				+1.2
5,782,295	-		Psyr_4871	0.12	+0.4
5,782,303	+		Psyr_4871	0.13	-2.2
5,782,304	-		Psyr_4871	0.13	+0.1
5,782,304	-		Psyr_4871	0.13	+0.6
5,782,341	-		Psyr_4871	0.16	-0.9
5,782,347	+		Psyr_4871	0.17	+0.0
5,782,361	+		Psyr_4871	0.18	-1.2
5,782,436	-		Psyr_4871	0.25	+2.3
5,782,468	+		Psyr_4871	0.28	+0.8
5,782,468	+		Psyr_4871	0.28	-2.2
5,782,468	+		Psyr_4871	0.28	-0.5
5,782,469	-		Psyr_4871	0.28	-0.2
5,782,469	-		Psyr_4871	0.28	-1.9
5,782,516	+		Psyr_4871	0.32	-1.3
5,782,516	+		Psyr_4871	0.32	+0.9
5,782,516	+		Psyr_4871	0.32	-1.6
5,782,517	-		Psyr_4871	0.32	+0.3
5,782,517	-		Psyr_4871	0.32	-1.6
5,782,522	+		Psyr_4871	0.33	+0.4
5,782,522	+		Psyr_4871	0.33	+0.1
5,782,523	-		Psyr_4871	0.33	+0.8
5,782,553	+		Psyr_4871	0.35	+2.2
5,782,558	+		Psyr_4871	0.36	+1.1
5,782,558	+		Psyr_4871	0.36	-0.8
5,782,558	+		Psyr_4871	0.36	-0.1
5,782,558	+		Psyr_4871	0.36	-1.4
5,782,558	+		Psyr_4871	0.36	-1.4
5,782,559	-		Psyr_4871	0.36	-0.7
5,782,559	-		Psyr_4871	0.36	+1.3
5,782,559	-		Psyr_4871	0.36	+1.9
5,782,570	+		Psyr_4871	0.37	-2.8
5,782,571	-		Psyr_4871	0.37	-1.0
5,782,571	-		Psyr_4871	0.37	+0.8
5,782,571	-		Psyr_4871	0.37	+2.9
5,782,571	-		Psyr_4871	0.37	+0.7
5,782,575	-		Psyr_4871	0.37	+1.0
5,782,586	+		Psyr_4871	0.38	-2.2
5,782,600	+		Psyr_4871	0.40	+1.7
5,782,600	+		Psyr_4871	0.40	-1.4
5,782,600	+		Psyr_4871	0.40	+1.4
5,782,600	+		Psyr_4871	0.40	+0.6
5,782,601	-		Psyr_4871	0.40	-2.4
5,782,601	-		Psyr_4871	0.40	-0.1
5,782,601	-		Psyr_4871	0.40	-0.8
5,782,601	-		Psyr_4871	0.40	-2.3
5,782,601	-		Psyr_4871	0.40	+1.3
5,782,601	-		Psyr_4871	0.40	-1.4
5,782,661	-		Psyr_4871	0.45	-0.9
5,782,661	-		Psyr_4871	0.45	-1.4
5,782,666	+		Psyr_4871	0.46	-1.2
5,782,667	-		Psyr_4871	0.46	+2.1
5,782,667	-		Psyr_4871	0.46	-1.2
5,782,667	-		Psyr_4871	0.46	+0.4
5,782,667	-		Psyr_4871	0.46	+0.8
5,782,667	-		Psyr_4871	0.46	-0.1
5,782,710	-		Psyr_4871	0.50	-0.7
5,782,710	-		Psyr_4871	0.50	+1.6
5,782,730	-		Psyr_4871	0.52	-0.6
5,782,730	-		Psyr_4871	0.52	-0.1
5,782,730	-		Psyr_4871	0.52	-0.8
5,782,851	+		Psyr_4871	0.63	+0.9
5,782,851	+		Psyr_4871	0.63	-1.9
5,782,851	+		Psyr_4871	0.63	+0.3
5,782,851	+		Psyr_4871	0.63	+1.0
5,782,851	+		Psyr_4871	0.63	-0.2
5,782,851	+		Psyr_4871	0.63	-1.4
5,782,878	+		Psyr_4871	0.65	+1.5
5,782,878	+		Psyr_4871	0.65	+0.5
5,782,879	-		Psyr_4871	0.65	+0.8
5,782,959	+		Psyr_4871	0.73	-1.1
5,782,960	-		Psyr_4871	0.73	-1.3
5,782,960	-		Psyr_4871	0.73	+0.1
5,782,968	+		Psyr_4871	0.73	+0.3
5,782,968	+		Psyr_4871	0.73	+0.0
5,782,969	-		Psyr_4871	0.74	+0.3
5,782,969	-		Psyr_4871	0.74	+0.2
5,782,993	+		Psyr_4871	0.76	+1.9
5,782,993	+		Psyr_4871	0.76	+0.6
5,782,994	-		Psyr_4871	0.76	+1.3
5,783,154	+				-2.0
5,783,223	+				+0.7
5,783,223	+				+0.0
5,783,224	-				+1.8
5,783,224	-				+0.1
5,783,274	-				+0.3
5,783,274	-				-1.0
5,783,330	+				+0.4
5,783,330	+				-1.9
5,783,330	+				-2.7
5,783,330	+				-2.8
5,783,334	+				-1.9
5,783,334	+				-3.1
5,783,334	+				-2.9
5,783,334	+				+0.0
5,783,376	+				-0.9
5,783,376	+				-0.1
5,783,376	+				-1.2
5,783,377	-				+0.6
5,783,377	-				-0.3
5,783,377	-				-2.1
5,783,377	-				-2.9
5,783,377	-				-1.8
5,783,377	-				-0.5
5,783,377	-				+0.2
5,783,377	-				-1.4
5,783,463	+				-0.2
5,783,463	+				-0.0
5,783,463	+				-0.4
5,783,463	+				+1.1
5,783,464	-				+0.6
5,783,464	-				+1.7
5,783,464	-				+1.2
5,783,464	-				+1.3
5,783,464	-				-1.6
5,783,464	-				-0.8
5,783,464	-				-0.1
5,783,464	-				-0.8
5,783,464	-				+0.1
5,783,470	+				-0.2
5,783,470	+				+1.5
5,783,470	+				-2.0
5,783,575	+				+0.6
5,783,575	+				+1.1
5,783,576	-				+2.6
5,783,576	-				-2.5
5,783,576	-				+0.1
5,783,576	-				-1.6
5,783,682	+				-1.6
5,783,682	+				+0.0
5,783,682	+				-0.2
5,783,683	-				+1.0
5,783,683	-				-2.6
5,783,683	-				-0.5
5,783,704	+				+0.0
5,783,704	+				-0.6
5,783,704	+				-1.6
5,783,704	+				-0.5
5,783,704	+				-0.6
5,783,704	+				-1.4
5,783,705	-				-2.2
5,783,705	-				-0.4
5,783,705	-				+0.1
5,783,705	-				+2.9
5,783,705	-				-0.4
5,783,705	-				-0.4
5,783,737	-				+0.7
5,783,903	-				-1.2
5,783,912	-				+0.2
5,783,912	-				+0.0
5,783,912	-				+1.1
5,783,967	-				-3.4
5,784,018	-				+1.0
5,784,020	+				-1.5
5,784,021	-				-2.0
5,784,024	-				-1.9
5,784,026	+				-3.2
5,784,039	+				-0.6
5,784,039	+				+2.4
5,784,111	+		Psyr_4872	0.14	+0.4
5,784,111	+		Psyr_4872	0.14	-3.1
5,784,112	-		Psyr_4872	0.14	-1.9
5,784,140	+		Psyr_4872	0.16	-0.4
5,784,140	+		Psyr_4872	0.16	-0.4
5,784,140	+		Psyr_4872	0.16	-1.7
5,784,140	+		Psyr_4872	0.16	-1.3
5,784,140	+		Psyr_4872	0.16	+0.9
5,784,141	-		Psyr_4872	0.17	-0.7
5,784,141	-		Psyr_4872	0.17	+0.8
5,784,141	-		Psyr_4872	0.17	+0.5
5,784,141	-		Psyr_4872	0.17	+0.8
5,784,141	-		Psyr_4872	0.17	-0.9
5,784,141	-		Psyr_4872	0.17	-3.1
5,784,141	-		Psyr_4872	0.17	-1.9
5,784,142	+		Psyr_4872	0.17	+1.1
5,784,142	+		Psyr_4872	0.17	-1.2
5,784,142	+		Psyr_4872	0.17	+0.0
5,784,142	+		Psyr_4872	0.17	-1.2
5,784,142	+		Psyr_4872	0.17	-0.2
5,784,142	+		Psyr_4872	0.17	+1.3
5,784,143	-		Psyr_4872	0.17	-0.2
5,784,143	-		Psyr_4872	0.17	-0.5
5,784,143	-		Psyr_4872	0.17	-2.1
5,784,143	-		Psyr_4872	0.17	-0.2
5,784,143	-		Psyr_4872	0.17	+2.0
5,784,143	-		Psyr_4872	0.17	-0.1
5,784,143	-		Psyr_4872	0.17	-0.8
5,784,217	-		Psyr_4872	0.22	+0.9
5,784,252	+		Psyr_4872	0.25	+0.2