Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4659

Experiment: apoplastic, chopping recovery; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic, chopping recovery; Green bean
5,518,363	-		Psyr_4657	0.30	-1.5
5,518,407	+		Psyr_4657	0.37	-0.3
5,518,407	+		Psyr_4657	0.37	-0.9
5,518,407	+		Psyr_4657	0.37	+0.5
5,518,407	+		Psyr_4657	0.37	+1.6
5,518,407	+		Psyr_4657	0.37	-1.0
5,518,681	-		Psyr_4657	0.78	+1.5
5,518,681	-		Psyr_4657	0.78	-0.9
5,518,681	-		Psyr_4657	0.78	-2.7
5,518,681	-		Psyr_4657	0.78	+0.5
5,518,681	-		Psyr_4657	0.78	-3.3
5,518,681	-		Psyr_4657	0.78	+1.9
5,518,681	-		Psyr_4657	0.78	+0.3
5,518,681	-		Psyr_4657	0.78	+0.7
5,518,681	-		Psyr_4657	0.78	-1.1
5,518,681	-		Psyr_4657	0.78	-0.5
5,518,681	-		Psyr_4657	0.78	-0.7
5,518,681	-		Psyr_4657	0.78	+0.2
5,518,681	-		Psyr_4657	0.78	-0.4
5,518,741	+		Psyr_4657	0.87	+0.6
5,518,741	+		Psyr_4657	0.87	+0.1
5,518,741	+		Psyr_4657	0.87	+0.8
5,518,771	+				-0.8
5,518,779	+				+2.4
5,518,793	-				-0.8
5,518,869	+		Psyr_4658	0.22	-2.6
5,518,870	-		Psyr_4658	0.22	+0.6
5,518,979	-		Psyr_4658	0.73	+0.2
5,519,067	+				-1.5
5,519,092	+				+1.5
5,519,092	+				+1.5
5,519,113	+				+2.9
5,519,113	+				-1.5
5,519,113	+				-0.7
5,519,113	+				+0.4
5,519,113	+				+0.0
5,519,113	+				-1.3
5,519,113	+				+0.6
5,519,113	+				+2.5
5,519,113	+				-0.4
5,519,113	+				+0.2
5,519,113	+				-1.2
5,519,114	-				+1.4
5,519,114	-				-0.5
5,519,114	-				+0.0
5,519,114	-				+0.3
5,519,114	-				+0.4
5,519,114	-				-2.5
5,519,114	-				-0.5
5,519,114	-				-0.2
5,519,114	-				+0.6
5,519,114	-				-0.3
5,519,114	-				-0.0
5,519,114	-				-0.1
5,519,114	-				+2.3
5,519,114	-				-1.8
5,519,115	+				+0.1
5,519,115	+				-3.2
5,519,115	+				-3.3
5,519,115	+				-0.9
5,519,115	+				+1.1
5,519,115	+				-0.6
5,519,115	+				-1.7
5,519,115	+				-0.2
5,519,115	+				-3.1
5,519,115	+				+2.0
5,519,115	+				-2.2
5,519,115	+				+0.1
5,519,115	+				-0.6
5,519,116	-				-3.0
5,519,116	-				-1.1
5,519,116	-				-1.7
5,519,116	-				+0.5
5,519,116	-				-1.8
5,519,116	-				+1.2
5,519,116	-				-0.8
5,519,116	-				-1.5
5,519,116	-				-1.8
5,519,116	-				+0.0
5,519,116	-				-0.5
5,519,116	-				+0.4
5,519,116	-				+0.3
5,519,116	-				+0.4
5,519,116	-				+1.6
5,519,116	-				+1.0
5,519,116	-				-1.8
5,519,116	-				+0.3
5,519,117	+				-0.9
5,519,117	+				-2.0
5,519,118	-				+0.3
5,519,246	+				-0.4
5,519,246	+				-1.3
5,519,247	-				-1.8
5,519,255	-				-2.6
5,519,265	-				+1.0
5,519,316	+				-3.3
5,519,316	+				+0.3
5,519,317	-				+0.1
5,519,340	-				-1.7
5,519,360	+				-1.1
5,519,360	+				-0.5
5,519,361	-				-2.3
5,519,361	-				+0.1
5,519,376	-				-1.3
5,519,376	-				-2.8
5,519,377	+				+2.7
5,519,378	-				-1.5
5,519,378	-				+1.9
5,519,388	+		Psyr_4659	0.10	+0.6
5,519,388	+		Psyr_4659	0.10	-1.1
5,519,388	+		Psyr_4659	0.10	-2.7
5,519,388	+		Psyr_4659	0.10	-2.0
5,519,388	+		Psyr_4659	0.10	-1.5
5,519,388	+		Psyr_4659	0.10	-2.2
5,519,388	+		Psyr_4659	0.10	-1.4
5,519,388	+		Psyr_4659	0.10	-3.5
5,519,388	+		Psyr_4659	0.10	-2.4
5,519,388	+		Psyr_4659	0.10	-1.5
5,519,388	+		Psyr_4659	0.10	-0.7
5,519,388	+		Psyr_4659	0.10	+0.4
5,519,388	+		Psyr_4659	0.10	-0.9
5,519,389	-		Psyr_4659	0.10	+2.5
5,519,389	-		Psyr_4659	0.10	+0.3
5,519,389	-		Psyr_4659	0.10	-1.2
5,519,389	-		Psyr_4659	0.10	-2.0
5,519,389	-		Psyr_4659	0.10	-0.1
5,519,389	-		Psyr_4659	0.10	+1.3
5,519,389	-		Psyr_4659	0.10	-4.7
5,519,389	-		Psyr_4659	0.10	-1.1
5,519,389	-		Psyr_4659	0.10	-2.2
5,519,389	-		Psyr_4659	0.10	-1.8
5,519,389	-		Psyr_4659	0.10	+1.8
5,519,389	-		Psyr_4659	0.10	-2.0
5,519,389	-		Psyr_4659	0.10	-1.3
5,519,389	-		Psyr_4659	0.10	+1.2
5,519,435	+		Psyr_4659	0.13	-1.2
5,519,564	+		Psyr_4659	0.22	+1.1
5,519,565	-		Psyr_4659	0.22	-1.5
5,519,565	-		Psyr_4659	0.22	-2.4
5,519,565	-		Psyr_4659	0.22	+0.3
5,519,565	-		Psyr_4659	0.22	-0.1
5,519,574	+		Psyr_4659	0.22	-0.9
5,519,574	+		Psyr_4659	0.22	-2.0
5,519,575	-		Psyr_4659	0.22	-0.3
5,519,575	-		Psyr_4659	0.22	+1.6
5,519,575	-		Psyr_4659	0.22	+0.3
5,519,624	+		Psyr_4659	0.25	-1.0
5,519,625	-		Psyr_4659	0.26	-2.9
5,519,625	-		Psyr_4659	0.26	-4.4
5,519,625	-		Psyr_4659	0.26	-0.6
5,519,625	-		Psyr_4659	0.26	+1.8
5,519,625	-		Psyr_4659	0.26	-0.1
5,519,646	+		Psyr_4659	0.27	+0.4
5,519,646	+		Psyr_4659	0.27	+1.2
5,519,646	+		Psyr_4659	0.27	+1.3
5,519,646	+		Psyr_4659	0.27	-0.5
5,519,647	-		Psyr_4659	0.27	-2.9
5,519,697	-		Psyr_4659	0.30	-2.4
5,519,847	-		Psyr_4659	0.40	-0.1
5,519,871	+		Psyr_4659	0.41	+1.6
5,519,871	+		Psyr_4659	0.41	+1.0
5,519,871	+		Psyr_4659	0.41	+0.3
5,519,871	+		Psyr_4659	0.41	-0.7
5,519,871	+		Psyr_4659	0.41	+1.1
5,519,871	+		Psyr_4659	0.41	-2.0
5,519,871	+		Psyr_4659	0.41	-0.8
5,519,872	-		Psyr_4659	0.41	+0.4
5,519,872	-		Psyr_4659	0.41	+1.3
5,519,872	-		Psyr_4659	0.41	-2.4
5,519,872	-		Psyr_4659	0.41	-0.4
5,519,872	-		Psyr_4659	0.41	-0.1
5,519,872	-		Psyr_4659	0.41	+1.7
5,519,872	-		Psyr_4659	0.41	+1.7
5,519,898	+		Psyr_4659	0.43	-0.8
5,519,899	-		Psyr_4659	0.43	-1.0
5,519,940	+		Psyr_4659	0.46	-1.7
5,519,940	+		Psyr_4659	0.46	-1.3
5,519,940	+		Psyr_4659	0.46	-0.1
5,519,940	+		Psyr_4659	0.46	-3.1
5,519,940	+		Psyr_4659	0.46	+1.4
5,519,940	+		Psyr_4659	0.46	-0.1
5,519,940	+		Psyr_4659	0.46	+0.5
5,519,940	+		Psyr_4659	0.46	+2.3
5,519,940	+		Psyr_4659	0.46	+1.2
5,519,940	+		Psyr_4659	0.46	-0.4
5,519,940	+		Psyr_4659	0.46	-1.3
5,519,940	+		Psyr_4659	0.46	-2.4
5,519,940	+		Psyr_4659	0.46	-2.1
5,519,940	+		Psyr_4659	0.46	-0.1
5,519,940	+		Psyr_4659	0.46	+0.2
5,519,940	+		Psyr_4659	0.46	+1.6
5,519,940	+		Psyr_4659	0.46	+0.7
5,519,940	+		Psyr_4659	0.46	-0.9
5,519,940	+		Psyr_4659	0.46	+0.9
5,519,940	+		Psyr_4659	0.46	+1.7
5,519,940	+		Psyr_4659	0.46	+1.3
5,519,940	+		Psyr_4659	0.46	-0.3
5,519,940	+		Psyr_4659	0.46	-1.8
5,519,940	+		Psyr_4659	0.46	+0.5
5,519,940	+		Psyr_4659	0.46	+0.4
5,519,940	+		Psyr_4659	0.46	-1.6
5,519,940	+		Psyr_4659	0.46	-2.1
5,519,940	+		Psyr_4659	0.46	-2.0
5,519,940	+		Psyr_4659	0.46	-0.8
5,519,940	+		Psyr_4659	0.46	-0.1
5,519,940	+		Psyr_4659	0.46	+0.9
5,519,941	-		Psyr_4659	0.46	-0.2
5,519,941	-		Psyr_4659	0.46	+1.1
5,519,941	-		Psyr_4659	0.46	+2.2
5,519,941	-		Psyr_4659	0.46	-1.7
5,519,941	-		Psyr_4659	0.46	-0.5
5,519,941	-		Psyr_4659	0.46	+0.8
5,519,941	-		Psyr_4659	0.46	-2.1
5,519,941	-		Psyr_4659	0.46	-1.5
5,519,941	-		Psyr_4659	0.46	+0.5
5,519,941	-		Psyr_4659	0.46	-2.3
5,519,941	-		Psyr_4659	0.46	-0.8
5,519,941	-		Psyr_4659	0.46	-2.0
5,519,941	-		Psyr_4659	0.46	-2.1
5,519,941	-		Psyr_4659	0.46	-1.1
5,519,941	-		Psyr_4659	0.46	-0.8
5,519,941	-		Psyr_4659	0.46	+3.1
5,519,941	-		Psyr_4659	0.46	+0.5
5,519,941	-		Psyr_4659	0.46	-1.1
5,519,941	-		Psyr_4659	0.46	+1.3
5,519,941	-		Psyr_4659	0.46	-1.8
5,519,941	-		Psyr_4659	0.46	-1.0
5,519,941	-		Psyr_4659	0.46	+0.2
5,519,941	-		Psyr_4659	0.46	+1.6
5,519,941	-		Psyr_4659	0.46	+0.2
5,519,941	-		Psyr_4659	0.46	-0.6
5,519,941	-		Psyr_4659	0.46	-0.7
5,519,941	-		Psyr_4659	0.46	+0.6
5,519,942	+		Psyr_4659	0.46	-0.1
5,519,942	+		Psyr_4659	0.46	-0.7
5,519,942	+		Psyr_4659	0.46	-1.1
5,519,942	+		Psyr_4659	0.46	+0.2
5,519,942	+		Psyr_4659	0.46	+2.2
5,519,942	+		Psyr_4659	0.46	+0.5
5,519,943	-		Psyr_4659	0.46	+2.1
5,519,943	-		Psyr_4659	0.46	-2.0
5,519,943	-		Psyr_4659	0.46	-2.1
5,519,943	-		Psyr_4659	0.46	+0.3
5,519,944	+		Psyr_4659	0.46	+0.8
5,519,944	+		Psyr_4659	0.46	-0.8
5,520,067	-		Psyr_4659	0.54	-0.1
5,520,067	-		Psyr_4659	0.54	+0.6
5,520,113	+		Psyr_4659	0.57	-1.8
5,520,113	+		Psyr_4659	0.57	+1.4
5,520,113	+		Psyr_4659	0.57	+2.8
5,520,113	+		Psyr_4659	0.57	+0.0
5,520,113	+		Psyr_4659	0.57	-2.2
5,520,113	+		Psyr_4659	0.57	-1.3
5,520,113	+		Psyr_4659	0.57	-1.6
5,520,113	+		Psyr_4659	0.57	-0.1
5,520,114	-		Psyr_4659	0.57	-1.4
5,520,114	-		Psyr_4659	0.57	-0.6
5,520,116	+		Psyr_4659	0.57	-1.3
5,520,116	+		Psyr_4659	0.57	+1.4
5,520,116	+		Psyr_4659	0.57	-2.7
5,520,116	+		Psyr_4659	0.57	-2.7
5,520,116	+		Psyr_4659	0.57	-0.6
5,520,116	+		Psyr_4659	0.57	-2.5
5,520,116	+		Psyr_4659	0.57	-0.7
5,520,116	+		Psyr_4659	0.57	-1.4
5,520,117	-		Psyr_4659	0.57	+1.5
5,520,117	-		Psyr_4659	0.57	-2.1
5,520,117	-		Psyr_4659	0.57	-2.5
5,520,117	-		Psyr_4659	0.57	-1.0
5,520,117	-		Psyr_4659	0.57	-1.7
5,520,117	-		Psyr_4659	0.57	-1.1
5,520,180	+		Psyr_4659	0.61	-0.3
5,520,181	-		Psyr_4659	0.61	+0.3
5,520,181	-		Psyr_4659	0.61	+0.6
5,520,181	-		Psyr_4659	0.61	-0.8
5,520,181	-		Psyr_4659	0.61	-0.8
5,520,185	+		Psyr_4659	0.62	+1.0
5,520,185	+		Psyr_4659	0.62	-0.5
5,520,185	+		Psyr_4659	0.62	+0.7
5,520,185	+		Psyr_4659	0.62	-1.5
5,520,185	+		Psyr_4659	0.62	-1.3
5,520,185	+		Psyr_4659	0.62	-2.7
5,520,185	+		Psyr_4659	0.62	+1.6
5,520,185	+		Psyr_4659	0.62	-1.1
5,520,186	-		Psyr_4659	0.62	-1.7
5,520,186	-		Psyr_4659	0.62	+0.4
5,520,186	-		Psyr_4659	0.62	+0.9
5,520,186	-		Psyr_4659	0.62	+0.9
5,520,186	-		Psyr_4659	0.62	-0.6
5,520,186	-		Psyr_4659	0.62	-0.4
5,520,186	-		Psyr_4659	0.62	-2.4
5,520,341	+		Psyr_4659	0.72	-1.8
5,520,341	+		Psyr_4659	0.72	-0.5
5,520,341	+		Psyr_4659	0.72	-0.5
5,520,341	+		Psyr_4659	0.72	+0.2
5,520,341	+		Psyr_4659	0.72	-1.7
5,520,341	+		Psyr_4659	0.72	-1.5
5,520,341	+		Psyr_4659	0.72	-2.3
5,520,341	+		Psyr_4659	0.72	-3.0
5,520,341	+		Psyr_4659	0.72	-2.3
5,520,342	-		Psyr_4659	0.72	-1.7
5,520,342	-		Psyr_4659	0.72	+0.6
5,520,371	+		Psyr_4659	0.74	+0.5
5,520,372	-		Psyr_4659	0.74	-1.8
5,520,372	-		Psyr_4659	0.74	+0.4
5,520,372	-		Psyr_4659	0.74	+0.6
5,520,372	-		Psyr_4659	0.74	-1.3
5,520,396	+		Psyr_4659	0.75	+0.7
5,520,414	+		Psyr_4659	0.76	+1.3
5,520,414	+		Psyr_4659	0.76	+0.5
5,520,415	-		Psyr_4659	0.76	+0.2
5,520,415	-		Psyr_4659	0.76	+0.2
5,520,440	+		Psyr_4659	0.78	-1.3
5,520,440	+		Psyr_4659	0.78	-1.0
5,520,443	+		Psyr_4659	0.78	-0.6
5,520,443	+		Psyr_4659	0.78	-1.3
5,520,444	-		Psyr_4659	0.78	-3.5
5,520,444	-		Psyr_4659	0.78	-2.4
5,520,444	-		Psyr_4659	0.78	-0.8
5,520,444	-		Psyr_4659	0.78	-1.3
5,520,444	-		Psyr_4659	0.78	-0.8
5,520,444	-		Psyr_4659	0.78	-3.0
5,520,444	-		Psyr_4659	0.78	+2.2
5,520,444	-		Psyr_4659	0.78	-1.5
5,520,444	-		Psyr_4659	0.78	-2.1
5,520,534	+		Psyr_4659	0.84	-0.7
5,520,535	-		Psyr_4659	0.84	-1.7
5,520,616	-		Psyr_4659	0.89	-2.7
5,520,779	+				-0.4
5,520,779	+				+0.5
5,520,779	+				+0.7
5,520,779	+				-2.2
5,520,779	+				-0.5
5,520,779	+				-0.8
5,520,779	+				+2.1
5,520,779	+				-1.1
5,520,779	+				-2.7
5,520,779	+				-0.5
5,520,779	+				+0.5
5,520,779	+				+1.5
5,520,779	+				-0.5
5,520,779	+				-0.8
5,520,779	+				-0.2
5,520,779	+				-0.8
5,520,779	+				-2.7
5,520,779	+				+0.5
5,520,779	+				+0.5
5,520,779	+				-0.5
5,520,779	+				-3.6
5,520,779	+				-0.7
5,520,779	+				+1.0
5,520,779	+				-2.1
5,520,779	+				-0.8
5,520,779	+				+1.3
5,520,779	+				+0.5
5,520,779	+				+1.4
5,520,779	+				-1.4
5,520,779	+				+0.5
5,520,779	+				-3.8
5,520,779	+				-1.0
5,520,779	+				-0.5
5,520,779	+				-0.4
5,520,779	+				+0.5
5,520,780	-				-1.7
5,520,780	-				+0.7
5,520,780	-				-0.5
5,520,780	-				+1.4
5,520,780	-				-1.5
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