Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4447

Experiment: apoplastic, chopping recovery; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4445 and Psyr_4446 are separated by 308 nucleotidesPsyr_4446 and Psyr_4447 are separated by 167 nucleotidesPsyr_4447 and Psyr_4448 are separated by 0 nucleotidesPsyr_4448 and Psyr_4449 are separated by 177 nucleotides Psyr_4445: Psyr_4445 - conserved hypothetical protein, at 5,311,983 to 5,312,216 _4445 Psyr_4446: Psyr_4446 - SmpA/OmlA, at 5,312,525 to 5,312,863 _4446 Psyr_4447: Psyr_4447 - hypothetical protein, at 5,313,031 to 5,313,366 _4447 Psyr_4448: Psyr_4448 - Ferritin and Dps, at 5,313,367 to 5,313,909 _4448 Psyr_4449: Psyr_4449 - AsmA, at 5,314,087 to 5,316,153 _4449 Position (kb) 5313 5314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.091 kb on + strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.092 kb on - strand, within Psyr_4445at 5312.132 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.160 kb on + strand, within Psyr_4445at 5312.161 kb on - strand, within Psyr_4445at 5312.186 kb on - strand, within Psyr_4445at 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.197 kb on + strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.198 kb on - strandat 5312.260 kb on + strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.261 kb on - strandat 5312.355 kb on - strandat 5312.428 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.528 kb on + strandat 5312.529 kb on - strandat 5312.529 kb on - strandat 5312.557 kb on - strandat 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.609 kb on + strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.610 kb on - strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.618 kb on + strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.619 kb on - strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.741 kb on + strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.742 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.775 kb on - strand, within Psyr_4446at 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.861 kb on + strandat 5312.862 kb on - strandat 5312.862 kb on - strandat 5313.164 kb on + strand, within Psyr_4447at 5313.164 kb on + strand, within Psyr_4447at 5313.165 kb on - strand, within Psyr_4447at 5313.177 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.225 kb on + strand, within Psyr_4447at 5313.226 kb on - strand, within Psyr_4447at 5313.231 kb on + strand, within Psyr_4447at 5313.232 kb on - strand, within Psyr_4447at 5313.232 kb on - strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.324 kb on + strand, within Psyr_4447at 5313.364 kb on + strandat 5313.364 kb on + strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.365 kb on - strandat 5313.404 kb on + strandat 5313.404 kb on + strandat 5313.404 kb on + strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.405 kb on - strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.408 kb on + strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.409 kb on - strandat 5313.463 kb on + strand, within Psyr_4448at 5313.464 kb on - strand, within Psyr_4448at 5313.464 kb on - strand, within Psyr_4448at 5313.539 kb on - strand, within Psyr_4448at 5313.550 kb on + strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.551 kb on - strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.553 kb on + strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.554 kb on - strand, within Psyr_4448at 5313.648 kb on + strand, within Psyr_4448at 5313.649 kb on - strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.715 kb on + strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.716 kb on - strand, within Psyr_4448at 5313.749 kb on - strand, within Psyr_4448at 5313.749 kb on - strand, within Psyr_4448at 5313.805 kb on + strand, within Psyr_4448at 5313.805 kb on + strand, within Psyr_4448at 5313.964 kb on + strandat 5313.964 kb on + strandat 5313.964 kb on + strandat 5314.044 kb on + strandat 5314.044 kb on + strandat 5314.045 kb on - strandat 5314.088 kb on + strandat 5314.088 kb on + strandat 5314.088 kb on + strandat 5314.089 kb on - strandat 5314.089 kb on - strandat 5314.201 kb on + strandat 5314.201 kb on + strandat 5314.202 kb on - strandat 5314.202 kb on - strandat 5314.202 kb on - strandat 5314.243 kb on + strandat 5314.295 kb on + strand, within Psyr_4449at 5314.295 kb on + strand, within Psyr_4449at 5314.295 kb on + strand, within Psyr_4449at 5314.295 kb on + strand, within Psyr_4449at 5314.296 kb on - strand, within Psyr_4449at 5314.296 kb on - strand, within Psyr_4449at 5314.296 kb on - strand, within Psyr_4449

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic, chopping recovery; Green bean
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5,312,091 + Psyr_4445 0.46 +1.2
5,312,091 + Psyr_4445 0.46 -0.8
5,312,091 + Psyr_4445 0.46 -0.7
5,312,091 + Psyr_4445 0.46 +0.6
5,312,091 + Psyr_4445 0.46 +0.2
5,312,092 - Psyr_4445 0.47 -2.0
5,312,092 - Psyr_4445 0.47 -4.0
5,312,092 - Psyr_4445 0.47 +0.6
5,312,092 - Psyr_4445 0.47 -2.2
5,312,132 + Psyr_4445 0.64 -1.3
5,312,160 + Psyr_4445 0.76 -0.2
5,312,160 + Psyr_4445 0.76 +1.1
5,312,161 - Psyr_4445 0.76 -0.7
5,312,186 - Psyr_4445 0.87 +0.1
5,312,197 + -1.8
5,312,197 + +0.4
5,312,197 + -0.1
5,312,197 + +1.8
5,312,198 - +0.9
5,312,198 - +0.7
5,312,198 - +1.6
5,312,260 + -2.4
5,312,261 - +0.5
5,312,261 - +1.2
5,312,261 - -0.5
5,312,355 - +2.1
5,312,428 + +0.2
5,312,528 + +0.3
5,312,528 + -2.5
5,312,528 + +0.5
5,312,529 - +0.6
5,312,529 - +0.8
5,312,557 - -1.6
5,312,609 + Psyr_4446 0.25 -1.1
5,312,609 + Psyr_4446 0.25 +2.2
5,312,609 + Psyr_4446 0.25 +0.7
5,312,609 + Psyr_4446 0.25 +0.9
5,312,609 + Psyr_4446 0.25 +1.3
5,312,609 + Psyr_4446 0.25 -1.3
5,312,609 + Psyr_4446 0.25 +0.6
5,312,609 + Psyr_4446 0.25 -3.2
5,312,610 - Psyr_4446 0.25 +0.6
5,312,610 - Psyr_4446 0.25 -1.6
5,312,618 + Psyr_4446 0.27 -1.1
5,312,618 + Psyr_4446 0.27 +2.0
5,312,619 - Psyr_4446 0.28 +0.3
5,312,619 - Psyr_4446 0.28 -0.7
5,312,741 + Psyr_4446 0.64 +4.1
5,312,741 + Psyr_4446 0.64 +0.1
5,312,741 + Psyr_4446 0.64 -1.3
5,312,741 + Psyr_4446 0.64 +0.8
5,312,741 + Psyr_4446 0.64 +0.5
5,312,741 + Psyr_4446 0.64 -0.4
5,312,741 + Psyr_4446 0.64 +1.5
5,312,741 + Psyr_4446 0.64 +3.1
5,312,741 + Psyr_4446 0.64 -1.5
5,312,741 + Psyr_4446 0.64 -1.0
5,312,741 + Psyr_4446 0.64 +0.6
5,312,741 + Psyr_4446 0.64 +1.0
5,312,741 + Psyr_4446 0.64 +0.5
5,312,741 + Psyr_4446 0.64 +1.0
5,312,741 + Psyr_4446 0.64 +1.1
5,312,741 + Psyr_4446 0.64 -0.1
5,312,742 - Psyr_4446 0.64 -1.7
5,312,742 - Psyr_4446 0.64 +2.1
5,312,742 - Psyr_4446 0.64 -0.7
5,312,742 - Psyr_4446 0.64 -1.0
5,312,742 - Psyr_4446 0.64 +2.2
5,312,742 - Psyr_4446 0.64 -1.8
5,312,742 - Psyr_4446 0.64 -0.6
5,312,742 - Psyr_4446 0.64 +0.1
5,312,742 - Psyr_4446 0.64 +0.1
5,312,742 - Psyr_4446 0.64 +0.7
5,312,742 - Psyr_4446 0.64 -0.9
5,312,742 - Psyr_4446 0.64 +0.5
5,312,742 - Psyr_4446 0.64 -0.8
5,312,742 - Psyr_4446 0.64 +1.8
5,312,775 - Psyr_4446 0.74 +1.5
5,312,775 - Psyr_4446 0.74 +0.2
5,312,775 - Psyr_4446 0.74 +0.0
5,312,861 + +1.8
5,312,861 + +0.4
5,312,861 + +1.1
5,312,861 + -1.8
5,312,862 - +0.7
5,312,862 - +0.7
5,313,164 + Psyr_4447 0.40 -1.1
5,313,164 + Psyr_4447 0.40 -2.1
5,313,165 - Psyr_4447 0.40 -0.6
5,313,177 + Psyr_4447 0.43 +0.3
5,313,225 + Psyr_4447 0.58 -0.2
5,313,225 + Psyr_4447 0.58 +0.4
5,313,225 + Psyr_4447 0.58 -2.7
5,313,226 - Psyr_4447 0.58 +0.5
5,313,231 + Psyr_4447 0.60 +0.2
5,313,232 - Psyr_4447 0.60 +1.1
5,313,232 - Psyr_4447 0.60 -1.3
5,313,324 + Psyr_4447 0.87 -3.0
5,313,324 + Psyr_4447 0.87 +0.1
5,313,324 + Psyr_4447 0.87 -2.2
5,313,364 + +1.5
5,313,364 + +1.5
5,313,365 - +0.3
5,313,365 - +0.2
5,313,365 - -0.5
5,313,365 - +0.2
5,313,404 + +2.3
5,313,404 + -1.2
5,313,404 + -1.8
5,313,405 - -0.6
5,313,405 - -1.1
5,313,405 - +0.9
5,313,405 - -3.4
5,313,408 + -1.3
5,313,408 + -1.1
5,313,408 + +0.5
5,313,408 + -0.4
5,313,408 + -0.8
5,313,408 + +0.0
5,313,409 - +0.2
5,313,409 - +2.3
5,313,409 - -1.2
5,313,409 - +1.1
5,313,409 - -2.5
5,313,409 - -0.5
5,313,463 + Psyr_4448 0.18 +2.9
5,313,464 - Psyr_4448 0.18 +0.0
5,313,464 - Psyr_4448 0.18 -1.2
5,313,539 - Psyr_4448 0.32 -2.3
5,313,550 + Psyr_4448 0.34 -0.2
5,313,551 - Psyr_4448 0.34 -0.8
5,313,551 - Psyr_4448 0.34 +0.5
5,313,551 - Psyr_4448 0.34 +0.5
5,313,553 + Psyr_4448 0.34 +0.7
5,313,553 + Psyr_4448 0.34 -0.1
5,313,553 + Psyr_4448 0.34 -1.7
5,313,553 + Psyr_4448 0.34 +0.9
5,313,553 + Psyr_4448 0.34 -1.3
5,313,553 + Psyr_4448 0.34 -0.1
5,313,553 + Psyr_4448 0.34 +0.7
5,313,553 + Psyr_4448 0.34 -0.5
5,313,553 + Psyr_4448 0.34 -1.1
5,313,553 + Psyr_4448 0.34 -0.2
5,313,553 + Psyr_4448 0.34 -1.3
5,313,553 + Psyr_4448 0.34 -0.9
5,313,553 + Psyr_4448 0.34 -0.6
5,313,553 + Psyr_4448 0.34 +1.3
5,313,553 + Psyr_4448 0.34 -1.7
5,313,553 + Psyr_4448 0.34 +1.1
5,313,553 + Psyr_4448 0.34 -0.3
5,313,553 + Psyr_4448 0.34 +0.4
5,313,553 + Psyr_4448 0.34 +1.1
5,313,553 + Psyr_4448 0.34 -0.4
5,313,553 + Psyr_4448 0.34 +3.6
5,313,553 + Psyr_4448 0.34 +0.1
5,313,553 + Psyr_4448 0.34 +0.1
5,313,554 - Psyr_4448 0.34 +1.3
5,313,554 - Psyr_4448 0.34 -0.0
5,313,554 - Psyr_4448 0.34 +1.8
5,313,554 - Psyr_4448 0.34 +0.6
5,313,554 - Psyr_4448 0.34 +1.7
5,313,554 - Psyr_4448 0.34 -0.3
5,313,554 - Psyr_4448 0.34 -0.4
5,313,554 - Psyr_4448 0.34 -2.5
5,313,554 - Psyr_4448 0.34 +0.4
5,313,554 - Psyr_4448 0.34 -0.1
5,313,554 - Psyr_4448 0.34 +0.4
5,313,554 - Psyr_4448 0.34 -1.5
5,313,554 - Psyr_4448 0.34 -1.1
5,313,554 - Psyr_4448 0.34 +0.9
5,313,554 - Psyr_4448 0.34 -0.4
5,313,554 - Psyr_4448 0.34 -0.8
5,313,554 - Psyr_4448 0.34 -2.1
5,313,554 - Psyr_4448 0.34 -1.7
5,313,554 - Psyr_4448 0.34 +0.5
5,313,554 - Psyr_4448 0.34 -0.4
5,313,554 - Psyr_4448 0.34 +1.8
5,313,648 + Psyr_4448 0.52 -2.3
5,313,649 - Psyr_4448 0.52 +1.6
5,313,715 + Psyr_4448 0.64 -0.5
5,313,715 + Psyr_4448 0.64 -0.4
5,313,715 + Psyr_4448 0.64 -0.8
5,313,715 + Psyr_4448 0.64 -2.3
5,313,716 - Psyr_4448 0.64 +0.8
5,313,716 - Psyr_4448 0.64 -1.0
5,313,716 - Psyr_4448 0.64 +0.0
5,313,716 - Psyr_4448 0.64 +0.1
5,313,716 - Psyr_4448 0.64 +0.0
5,313,716 - Psyr_4448 0.64 -3.1
5,313,749 - Psyr_4448 0.70 -1.5
5,313,749 - Psyr_4448 0.70 -1.1
5,313,805 + Psyr_4448 0.81 -2.1
5,313,805 + Psyr_4448 0.81 +1.6
5,313,964 + +0.6
5,313,964 + +0.9
5,313,964 + +1.0
5,314,044 + -1.1
5,314,044 + +1.7
5,314,045 - -1.3
5,314,088 + +0.3
5,314,088 + +1.5
5,314,088 + +1.4
5,314,089 - +0.3
5,314,089 - +0.6
5,314,201 + +0.8
5,314,201 + -0.9
5,314,202 - -0.3
5,314,202 - -0.1
5,314,202 - +0.1
5,314,243 + -0.5
5,314,295 + Psyr_4449 0.10 -0.5
5,314,295 + Psyr_4449 0.10 +0.5
5,314,295 + Psyr_4449 0.10 -0.2
5,314,295 + Psyr_4449 0.10 +0.1
5,314,296 - Psyr_4449 0.10 -2.1
5,314,296 - Psyr_4449 0.10 -0.8
5,314,296 - Psyr_4449 0.10 +0.4

Or see this region's nucleotide sequence